Atom Nomenclature for EIN

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for EIN

Atom Name (V3) Atom Name (V2)
C14 C14
C15 C15
C16 C16
C17 C17
C1 C1
C2 C2
O1 O1
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
S1 S1
O2 O2
O3 O3
N1 N1
C10 C10
C11 C11
C12 C12
C13 C13
P1 P1
O4 O4
O5 O5
O6 O6
H15 H15
H16 H16
H1 H1
H2 H2
H31 1H3
H32 2H3
H33 3H3
H5 H5
H6 H6
H8 H8
H9 H9
HN1 HN1
H10 H10
H11 H11
H121 1H12
H122 2H12
H123 3H12
H131 1H13
H132 2H13
H133 3H13
HO5 HO5
HO6 HO6