PDB Chemical Component EHG
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for EHG
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N2 |
C2 |
1.427 |
1.385 |
| O3' |
C3' |
1.373 |
1.429 |
| C2 |
N3 |
1.366 |
1.323 |
| C2 |
N1 |
1.344 |
1.327 |
| N3 |
C4 |
1.397 |
1.329 |
| C1' |
O4' |
1.386 |
1.444 |
| C1' |
N9 |
1.419 |
1.465 |
| C1' |
C2' |
1.485 |
1.545 |
| N1 |
C6 |
1.336 |
1.326 |
| O4' |
C4' |
1.453 |
1.444 |
| C4 |
N9 |
1.413 |
1.372 |
| C4 |
C5 |
1.371 |
1.405 |
| C4' |
C3' |
1.463 |
1.545 |
| C4' |
C5' |
1.433 |
1.530 |
| N9 |
C8 |
1.346 |
1.364 |
| C3' |
C2' |
1.463 |
1.545 |
| C6 |
C5 |
1.440 |
1.404 |
| C6 |
O6 |
1.379 |
1.354 |
| C5 |
N7 |
1.402 |
1.356 |
| C2X |
C1X |
1.530 |
1.530 |
| C2X |
OX |
1.359 |
1.429 |
| C1X |
O6 |
1.393 |
1.430 |
| C8 |
N7 |
1.368 |
1.301 |
| O5' |
C5' |
1.403 |
1.430 |
| O5' |
P |
1.552 |
1.610 |
| OP2 |
P |
1.582 |
1.610 |
| P |
OP1 |
1.569 |
1.480 |
| OP2 |
HOP2 |
0.950 |
0.967 |
| C5' |
H5' |
1.100 |
1.091 |
| C5' |
H5'' |
1.100 |
1.089 |
| C4' |
H4' |
1.100 |
1.090 |
| C3' |
H3' |
1.100 |
1.090 |
| O3' |
HO3' |
0.950 |
0.967 |
| C2' |
H2' |
1.100 |
1.091 |
| C2' |
H2'' |
1.100 |
1.090 |
| C1' |
H1' |
1.100 |
1.090 |
| C8 |
H8 |
1.080 |
1.080 |
| N2 |
H21 |
1.001 |
0.970 |
| N2 |
H22 |
1.000 |
0.970 |
| C1X |
H1X1 |
1.100 |
1.090 |
| C1X |
H1X2 |
1.101 |
1.090 |
| C2X |
H2X2 |
1.100 |
1.090 |
| C2X |
H2X1 |
1.100 |
1.091 |
| OX |
HOX |
0.950 |
0.967 |
| P |
OP3 |
|
1.610 |
| OP3 |
HOP3 |
|
0.967 |
Bond Angles for EHG
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C2 |
N3 |
121.1 |
118.9 |
| O3' |
C3' |
C2' |
111.2 |
110.5 |
| O3' |
C3' |
H3' |
112.1 |
110.6 |
| C1' |
N9 |
C8 |
122.8 |
126.3 |
| N9 |
C1' |
H1' |
109.9 |
110.3 |
| C1' |
C2' |
H2' |
111.3 |
110.5 |
| C1' |
C2' |
H2'' |
111.3 |
110.7 |
| N1 |
C6 |
O6 |
121.7 |
120.8 |
| O4' |
C4' |
H4' |
110.4 |
110.4 |
| C4' |
C3' |
C2' |
103.5 |
104.0 |
| C3' |
C4' |
H4' |
110.2 |
110.4 |
| C4' |
C3' |
H3' |
110.7 |
110.5 |
| C4' |
C5' |
H5' |
108.1 |
109.4 |
| C4' |
C5' |
H5'' |
108.1 |
109.5 |
| N9 |
C8 |
N7 |
109.2 |
110.0 |
| N9 |
C8 |
H8 |
125.4 |
125.0 |
| C2' |
C3' |
H3' |
110.7 |
110.5 |
| C3' |
C2' |
H2' |
111.3 |
110.5 |
| C3' |
C2' |
H2'' |
111.3 |
110.5 |
| C2X |
C1X |
H1X1 |
107.5 |
109.5 |
| C2X |
C1X |
H1X2 |
107.5 |
109.5 |
| OX |
C2X |
H2X2 |
107.0 |
109.5 |
| OX |
C2X |
H2X1 |
107.1 |
109.5 |
| C2X |
OX |
HOX |
109.5 |
114.0 |
| N7 |
C8 |
H8 |
125.4 |
125.0 |
| O5' |
C5' |
H5' |
108.1 |
109.4 |
| O5' |
C5' |
H5'' |
108.1 |
109.5 |
| O5' |
P |
OP3 |
|
109.5 |
| OP2 |
P |
OP1 |
114.8 |
109.5 |
| P |
OP2 |
HOP2 |
109.5 |
114.0 |
| OP2 |
P |
OP3 |
|
109.5 |
| OP1 |
P |
OP3 |
|
109.5 |
| H5' |
C5' |
H5'' |
109.5 |
109.5 |
| H2' |
C2' |
H2'' |
109.4 |
110.5 |
| H21 |
N2 |
H22 |
109.4 |
119.9 |
| H1X1 |
C1X |
H1X2 |
109.5 |
109.5 |
| H2X2 |
C2X |
H2X1 |
109.5 |
109.5 |
| P |
OP3 |
HOP3 |
|
114.0 |
Torsion Angles for EHG
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4' |
C3' |
O3' |
C2' |
113.1 |
114.6 |
| O3' |
C3' |
C4' |
H4' |
19.8 |
336.3 |
| C4' |
C3' |
O3' |
H3' |
237.6 |
237.3 |
| C2' |
C3' |
O3' |
H3' |
124.5 |
122.6 |
| O3' |
C3' |
C2' |
H2' |
322.8 |
237.3 |
| O3' |
C3' |
C2' |
H2'' |
200.5 |
359.9 |
| C2 |
N1 |
C6 |
O6 |
178.4 |
180.0 |
| O4' |
C1' |
C2' |
H2' |
158.9 |
265.3 |
| O4' |
C1' |
C2' |
H2'' |
281.2 |
142.7 |
| C1' |
O4' |
C4' |
H4' |
247.3 |
281.6 |
| N9 |
C1' |
C2' |
H2' |
276.2 |
24.2 |
| N9 |
C1' |
C2' |
H2'' |
38.5 |
261.5 |
| C1' |
N9 |
C8 |
N7 |
180.8 |
180.1 |
| C1' |
N9 |
C8 |
H8 |
0.8 |
0.0 |
| C1' |
C2' |
C3' |
H3' |
206.9 |
241.4 |
| C3' |
C2' |
C1' |
H2' |
241.2 |
118.6 |
| C3' |
C2' |
C1' |
H2'' |
118.8 |
241.3 |
| H2' |
C2' |
C1' |
H2'' |
237.6 |
122.7 |
| C3' |
C4' |
O4' |
H4' |
119.9 |
118.9 |
| O4' |
C4' |
C3' |
H3' |
136.5 |
94.6 |
| O4' |
C4' |
C5' |
H5' |
180.0 |
309.6 |
| O4' |
C4' |
C5' |
H5'' |
298.4 |
189.6 |
| C4 |
N9 |
C1' |
H1' |
318.8 |
325.6 |
| C4 |
N9 |
C8 |
H8 |
179.0 |
180.2 |
| O3' |
C3' |
C4' |
C2' |
241.8 |
241.4 |
| O3' |
C3' |
C4' |
H3' |
123.2 |
122.8 |
| O4' |
C4' |
C3' |
H4' |
240.0 |
241.1 |
| C3' |
C4' |
C5' |
H5' |
296.8 |
65.1 |
| C3' |
C4' |
C5' |
H5'' |
55.2 |
305.0 |
| C2' |
C3' |
C4' |
H3' |
241.4 |
241.4 |
| C4' |
C3' |
C2' |
H2' |
206.7 |
118.6 |
| C4' |
C3' |
C2' |
H2'' |
84.3 |
241.2 |
| O5' |
C5' |
C4' |
H5' |
239.2 |
119.9 |
| O5' |
C5' |
C4' |
H5'' |
120.8 |
240.0 |
| H5' |
C5' |
C4' |
H5'' |
241.6 |
120.1 |
| C8 |
N9 |
C1' |
H1' |
136.6 |
145.8 |
| N7 |
C8 |
N9 |
H8 |
180.0 |
180.0 |
| O3' |
C3' |
C2' |
H3' |
234.7 |
237.3 |
| C1' |
C2' |
C3' |
H2' |
118.8 |
241.4 |
| C1' |
C2' |
C3' |
H2'' |
241.2 |
118.8 |
| C2' |
C3' |
C4' |
H4' |
138.0 |
95.0 |
| C4' |
C3' |
C2' |
H3' |
118.6 |
118.6 |
| H2' |
C2' |
C3' |
H2'' |
122.3 |
237.5 |
| C5 |
N7 |
C8 |
H8 |
180.6 |
180.0 |
| H1X1 |
C1X |
C2X |
H1X2 |
242.2 |
120.0 |
| OX |
C2X |
C1X |
H1X1 |
177.4 |
305.0 |
| OX |
C2X |
C1X |
H1X2 |
295.2 |
185.0 |
| H2X2 |
C2X |
OX |
H2X1 |
117.3 |
120.0 |
| N9 |
C8 |
N7 |
H8 |
180.0 |
180.0 |
| C4' |
C5' |
O5' |
H5' |
120.8 |
240.1 |
| C4' |
C5' |
O5' |
H5'' |
239.2 |
120.0 |
| C5' |
O5' |
P |
OP3 |
|
175.0 |
| H5' |
C5' |
O5' |
H5'' |
118.4 |
239.9 |
| O5' |
P |
OP2 |
HOP2 |
233.5 |
300.0 |
| OP2 |
P |
O5' |
OP3 |
|
120.0 |
| OP1 |
P |
O5' |
OP3 |
|
240.0 |
| O5' |
P |
OP3 |
HOP3 |
|
180.0 |
| O5' |
P |
OP2 |
OP3 |
|
240.0 |
| OP1 |
P |
OP2 |
OP3 |
|
120.0 |
| OP2 |
P |
OP3 |
HOP3 |
|
59.9 |
| O5' |
P |
OP1 |
OP3 |
|
120.0 |
| OP1 |
P |
OP2 |
HOP2 |
0.0 |
180.0 |
| OP2 |
P |
OP1 |
OP3 |
|
240.0 |
| OP1 |
P |
OP3 |
HOP3 |
|
299.9 |
| HOP2 |
OP2 |
P |
OP1 |
0.0 |
180.0 |
| HOP2 |
OP2 |
P |
OP3 |
|
60.0 |
| C4' |
C5' |
H5' |
H5'' |
117.5 |
240.0 |
| O5' |
C5' |
H5' |
H5'' |
242.5 |
120.0 |
| C4' |
C5' |
H5'' |
H5' |
242.5 |
120.0 |
| O5' |
C5' |
H5'' |
H5' |
117.5 |
240.0 |
| H4' |
C4' |
C3' |
C2' |
138.0 |
95.0 |
| H4' |
C4' |
C3' |
H3' |
256.5 |
213.6 |
| H4' |
C4' |
C5' |
H5' |
59.8 |
187.3 |
| H4' |
C4' |
C5' |
H5'' |
178.2 |
67.2 |
| O3' |
C3' |
H3' |
C2' |
124.8 |
122.6 |
| C4' |
C3' |
H3' |
C2' |
245.9 |
245.4 |
| H3' |
C3' |
C4' |
H4' |
256.5 |
213.6 |
| H3' |
C3' |
C2' |
H2' |
88.1 |
0.0 |
| H3' |
C3' |
C2' |
H2'' |
325.8 |
122.6 |
| HO3' |
O3' |
C3' |
C2' |
66.9 |
65.3 |
| HO3' |
O3' |
C3' |
H3' |
302.4 |
302.7 |
| C1' |
C2' |
H2' |
H2'' |
123.4 |
237.2 |
| H2' |
C2' |
C3' |
H3' |
88.1 |
0.0 |
| C3' |
C2' |
H2' |
H2'' |
236.6 |
122.6 |
| C1' |
C2' |
H2'' |
H2' |
236.6 |
122.7 |
| H2'' |
C2' |
C3' |
H3' |
325.8 |
122.6 |
| C3' |
C2' |
H2'' |
H2' |
123.4 |
237.4 |
| H1' |
C1' |
N9 |
C8 |
136.6 |
145.8 |
| H1' |
C1' |
C2' |
H2' |
40.8 |
146.4 |
| H1' |
C1' |
C2' |
H2'' |
163.2 |
23.8 |
| N9 |
C8 |
H8 |
N7 |
180.0 |
180.0 |
| H21 |
N2 |
C2 |
N3 |
0.0 |
0.1 |
| H22 |
N2 |
C2 |
N3 |
120.0 |
180.0 |
| C2X |
C1X |
H1X1 |
H1X2 |
116.5 |
240.0 |
| C2X |
C1X |
H1X2 |
H1X1 |
243.5 |
120.0 |
| H2X2 |
C2X |
C1X |
H1X1 |
298.8 |
65.0 |
| H2X2 |
C2X |
C1X |
H1X2 |
56.5 |
305.0 |
| OX |
C2X |
H2X2 |
H2X1 |
244.3 |
240.0 |
| H2X2 |
C2X |
OX |
HOX |
58.6 |
60.0 |
| H2X1 |
C2X |
C1X |
H1X1 |
56.1 |
185.0 |
| H2X1 |
C2X |
C1X |
H1X2 |
173.9 |
65.0 |
| OX |
C2X |
H2X1 |
H2X2 |
115.7 |
120.0 |
| H2X1 |
C2X |
OX |
HOX |
301.3 |
300.0 |
| HOX |
OX |
C2X |
H2X2 |
58.6 |
60.0 |
| HOX |
OX |
C2X |
H2X1 |
301.3 |
300.0 |
| OP2 |
P |
OP3 |
OP1 |
|
120.0 |
| OP3 |
P |
OP2 |
HOP2 |
|
60.0 |