PDB Chemical Component EHD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for EHD

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O18 C14 1.324 1.221
C14 C15 1.338 1.410
C14 N12 1.367 1.346
C15 C19 1.489 1.506
C15 C16 1.404 1.360
C19 O22 1.453 1.454
C19 H191 1.115 1.089
C19 H192 1.115 1.090
O22 C20 1.373 1.355
C20 O23 1.307 1.208
C20 C21 1.527 1.511
C16 C17 1.395 1.402
C16 C21 1.493 1.508
C17 C13 1.399 1.378
C17 H17 1.103 1.080
C21 O24 1.326 1.428
C21 C25 1.541 1.530
O24 H24 0.950 0.967
C25 C31 1.587 1.530
C25 H251 1.115 1.090
C25 H252 1.114 1.089
C31 H311 1.115 1.090
C31 H312 1.115 1.090
C31 H313 1.115 1.090
N12 C11 1.438 1.469
N12 C13 1.316 1.366
C11 C8 1.490 1.507
C11 H111 1.115 1.090
C11 H112 1.114 1.090
C8 C7 1.326 1.360
C8 C9 1.452 1.405
C7 C6 1.415 1.409
C7 H7 1.103 1.080
C6 C5 1.416 1.419
C6 C1 1.401 1.404
C5 N10 1.442 1.333
C5 C4 1.350 1.408
N10 C9 1.322 1.324
C9 C13 1.360 1.481
C1 C2 1.365 1.362
C1 H1 1.102 1.080
C2 C3 1.398 1.394
C2 H2 1.102 1.080
C3 C4 1.413 1.360
C3 H3 1.103 1.080
C4 H4 1.104 1.080

Bond Angles for EHD

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O18 C14 C15 120.3 119.5
O18 C14 N12 122.0 119.6
C15 C14 N12 117.7 120.9
C14 C15 C19 112.8 118.2
C14 C15 C16 126.1 119.1
C14 N12 C11 122.9 130.9
C14 N12 C13 120.9 120.5
C19 C15 C16 121.2 122.6
C15 C19 O22 107.1 110.3
C15 C19 H191 113.1 109.3
C15 C19 H192 113.1 109.4
C15 C16 C17 113.1 119.3
C15 C16 C21 118.6 122.3
O22 C19 H191 113.1 109.3
O22 C19 H192 113.1 109.3
C19 O22 C20 122.2 116.9
H191 C19 H192 97.4 109.2
O22 C20 O23 119.4 121.8
O22 C20 C21 119.0 116.4
O23 C20 C21 121.6 121.8
C20 C21 C16 106.0 109.4
C20 C21 O24 108.7 109.5
C20 C21 C25 108.7 109.5
C17 C16 C21 128.2 118.4
C16 C17 C13 120.8 120.4
C16 C17 H17 119.4 119.8
C16 C21 O24 109.5 109.5
C16 C21 C25 115.5 109.4
C13 C17 H17 119.8 119.8
C17 C13 N12 121.4 119.8
C17 C13 C9 130.0 130.4
O24 C21 C25 108.4 109.5
C21 O24 H24 108.7 106.7
C21 C25 C31 110.5 109.4
C21 C25 H251 111.8 109.5
C21 C25 H252 111.8 109.5
C31 C25 H251 111.8 109.4
C31 C25 H252 111.9 109.5
C25 C31 H311 110.5 109.5
C25 C31 H312 111.9 109.5
C25 C31 H313 111.9 109.4
H251 C25 H252 98.6 109.5
H311 C31 H312 111.8 109.5
H311 C31 H313 111.8 109.5
H312 C31 H313 98.5 109.5
C11 N12 C13 116.3 108.6
N12 C11 C8 99.0 106.5
N12 C11 H111 116.2 110.0
N12 C11 H112 116.2 110.1
N12 C13 C9 108.5 109.8
C8 C11 H111 116.2 110.0
C8 C11 H112 116.2 110.1
C11 C8 C7 132.6 132.7
C11 C8 C9 108.3 106.8
H111 C11 H112 94.2 110.1
C7 C8 C9 119.0 120.5
C8 C7 C6 120.9 118.1
C8 C7 H7 116.3 121.0
C8 C9 N10 125.1 120.8
C8 C9 C13 107.8 108.2
C6 C7 H7 122.8 120.9
C7 C6 C5 117.7 119.1
C7 C6 C1 121.6 121.3
C5 C6 C1 120.6 119.6
C6 C5 N10 122.8 120.1
C6 C5 C4 119.3 119.0
C6 C1 C2 120.2 119.7
C6 C1 H1 121.2 120.1
N10 C5 C4 117.8 120.9
C5 N10 C9 114.4 121.5
C5 C4 C3 119.7 119.8
C5 C4 H4 117.9 120.1
N10 C9 C13 127.1 131.0
C2 C1 H1 118.6 120.2
C1 C2 C3 118.8 120.9
C1 C2 H2 119.5 119.6
C3 C2 H2 121.8 119.5
C2 C3 C4 121.4 121.1
C2 C3 H3 118.8 119.5
C4 C3 H3 119.8 119.5
C3 C4 H4 122.4 120.2

Torsion Angles for EHD

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C15 C14 O18 N12 179.3 180.0
O18 C14 C15 C19 0.7 0.9
O18 C14 C15 C16 180.1 180.8
O18 C14 N12 C11 0.3 359.7
O18 C14 N12 C13 179.9 179.7
O18 C14 C15 N12 180.6 180.0
C15 C14 N12 C11 181.0 179.7
C15 C14 N12 C13 0.5 359.7
C19 C15 C14 C16 180.6 180.1
C14 C15 C19 O22 141.4 193.9
C14 C15 C19 H191 266.6 73.6
C14 C15 C19 H192 16.2 314.1
C14 C15 C16 C17 359.8 359.1
C14 C15 C16 C21 181.0 178.8
O18 C14 N12 C15 179.3 180.0
N12 C14 C15 C19 180.0 180.9
N12 C14 C15 C16 359.5 0.8
C17 C13 N12 C14 0.2 359.9
C11 N12 C14 C13 180.4 180.0
C14 N12 C11 C8 180.3 180.0
C14 N12 C11 H111 305.5 299.2
C14 N12 C11 H112 55.0 60.7
C14 N12 C13 C9 179.4 180.0
C19 C15 C14 N12 180.0 180.9
C14 C15 C19 C16 179.4 179.9
C19 C15 C16 C17 179.2 179.0
C19 C15 C16 C21 0.4 358.8
O22 C19 C15 H191 234.8 120.3
O22 C19 C15 H192 125.2 239.8
C15 C19 O22 C20 35.1 317.7
H191 C19 C15 H192 250.5 119.5
C16 C15 C14 N12 359.5 0.8
C14 C15 C16 C19 180.6 180.1
C16 C15 C19 O22 322.0 14.0
C16 C15 C19 H191 87.2 253.7
C16 C15 C19 H192 196.7 134.2
C20 C21 C16 C15 38.7 12.2
C17 C16 C15 C21 178.8 180.3
C15 C16 C17 C13 1.0 0.5
C15 C16 C17 H17 181.0 180.5
C15 C16 C21 O24 155.7 132.2
C15 C16 C21 C25 278.3 252.2
O22 C19 C15 C16 322.0 14.0
C15 C19 O22 H191 125.2 239.7
C15 C19 O22 H192 234.8 120.3
H191 C19 O22 H192 109.5 240.5
C19 O22 C20 O23 185.6 238.4
C19 O22 C20 C21 4.9 58.4
H191 C19 C15 C16 87.2 253.7
C15 C19 H191 O22 238.1 120.9
C15 C19 H191 H192 119.1 240.4
O22 C19 H191 H192 241.0 119.5
H191 C19 O22 C20 269.8 78.0
H192 C19 C15 C16 196.7 134.2
C15 C19 H192 O22 121.9 239.1
C15 C19 H192 H191 241.0 119.6
O22 C19 H192 H191 119.0 240.4
H192 C19 O22 C20 160.3 197.4
C20 O22 C19 H191 269.8 78.0
C20 O22 C19 H192 160.3 197.4
O23 C20 O22 C21 180.7 180.0
O22 C20 C21 C16 317.8 320.1
O22 C20 C21 O24 200.3 200.1
O22 C20 C21 C25 82.5 80.0
O22 C20 O23 C21 179.3 180.0
O23 C20 C21 C16 137.1 140.1
O23 C20 C21 O24 19.6 20.1
O23 C20 C21 C25 261.8 260.0
C15 C16 C21 C20 38.7 12.2
O22 C20 C21 O23 180.7 180.0
C17 C16 C21 C20 220.1 191.9
C16 C21 C20 O24 117.5 120.0
C16 C21 C20 C25 235.3 240.1
O24 C21 C20 C25 117.8 120.1
C20 C21 O24 H24 180.0 299.9
C20 C21 C25 C31 130.3 60.0
C20 C21 C25 H251 255.5 300.1
C20 C21 C25 H252 5.0 180.1
C15 C16 C17 C21 181.4 179.7
C20 C21 C16 C17 220.1 191.9
C17 C16 C21 O24 337.1 311.9
C17 C16 C21 C25 99.8 71.9
C13 C17 C16 H17 179.9 180.0
C16 C17 C13 N12 359.0 0.0
C16 C17 C13 C9 180.0 179.9
C15 C16 C21 C17 178.6 180.3
C20 C21 C16 O24 243.0 240.0
C20 C21 C16 C25 120.4 120.0
C21 C16 C17 C13 179.6 180.8
C21 C16 C17 H17 359.7 0.8
O24 C21 C16 C25 237.4 240.0
C16 C21 O24 H24 64.7 180.0
C16 C21 C25 C31 249.2 179.9
C16 C21 C25 H251 14.4 60.0
C16 C21 C25 H252 123.9 300.0
C14 N12 C13 C17 0.2 359.9
C13 C17 C16 C21 179.6 180.8
C16 C17 C13 H17 180.1 180.0
C11 N12 C13 C17 179.8 179.9
N12 C13 C17 C9 179.0 180.1
C8 C9 C13 C17 179.9 180.2
N10 C9 C13 C17 0.1 0.2
H17 C17 C16 C21 359.7 0.8
C16 C17 H17 C13 179.9 180.0
H17 C17 C13 N12 178.9 180.0
H17 C17 C13 C9 360.0 359.9
C20 C21 O24 C16 115.3 119.9
C20 C21 O24 C25 242.0 239.9
C16 C21 O24 C25 126.7 120.0
O24 C21 C25 C31 12.4 299.9
O24 C21 C25 H251 137.6 180.0
O24 C21 C25 H252 247.1 60.0
C20 C21 C25 C16 241.1 240.1
C20 C21 C25 O24 118.0 120.1
C16 C21 C25 O24 236.8 240.0
C25 C21 O24 H24 297.9 60.1
C31 C25 C21 H251 234.8 119.9
C31 C25 C21 H252 125.3 239.9
C21 C25 C31 H311 180.0 180.0
C21 C25 C31 H312 305.3 300.0
C21 C25 C31 H313 54.7 60.0
H251 C25 C21 H252 250.5 120.0
H24 O24 C21 C25 297.9 60.1
C21 C25 C31 H251 125.2 240.0
C21 C25 C31 H252 234.8 120.0
H251 C25 C31 H252 109.6 240.0
H311 C31 C25 H312 234.7 240.0
H311 C31 C25 H313 125.3 120.0
H312 C31 C25 H313 250.6 240.0
C21 C25 H251 C31 235.5 119.9
C21 C25 H251 H252 117.7 240.0
C31 C25 H251 H252 242.2 120.0
H251 C25 C31 H311 54.8 300.0
H251 C25 C31 H312 180.1 60.0
H251 C25 C31 H313 289.5 180.0
C21 C25 H252 C31 124.5 240.0
C21 C25 H252 H251 242.3 120.0
C31 C25 H252 H251 117.8 240.0
H252 C25 C31 H311 305.2 60.0
H252 C25 C31 H312 70.5 180.0
H252 C25 C31 H313 179.9 300.0
H311 C31 C25 H251 54.8 300.0
H311 C31 C25 H252 305.2 60.0
C25 C31 H311 H312 125.3 120.0
C25 C31 H311 H313 234.7 240.0
H312 C31 H311 H313 109.4 120.0
H312 C31 C25 H251 180.1 60.0
H312 C31 C25 H252 70.5 180.0
C25 C31 H312 H311 235.4 240.0
C25 C31 H312 H313 117.8 120.0
H311 C31 H312 H313 242.3 240.0
H313 C31 C25 H251 289.5 180.0
H313 C31 C25 H252 179.9 300.0
C25 C31 H313 H311 124.6 120.0
C25 C31 H313 H312 242.3 240.0
H311 C31 H313 H312 117.7 120.0
C14 N12 C11 C13 179.6 180.0
C17 C13 N12 C11 179.8 179.9
C11 N12 C13 C9 359.0 360.0
C8 C11 N12 H111 234.8 240.8
C8 C11 N12 H112 125.3 119.3
N12 C11 C8 C7 179.4 180.0
N12 C11 C8 C9 359.8 0.0
H111 C11 N12 H112 250.5 238.5
C14 N12 C13 C11 180.4 180.0
N12 C13 C17 H17 178.9 180.0
C17 C13 N12 C9 180.8 179.9
C13 N12 C11 C8 0.7 0.0
C13 N12 C11 H111 126.0 119.2
C13 N12 C11 H112 235.5 240.7
C8 C9 C13 N12 0.8 0.0
N10 C9 C13 N12 181.0 180.1
C8 C11 N12 C13 0.7 0.0
N12 C11 C8 H111 125.2 119.2
N12 C11 C8 H112 234.7 240.7
H111 C11 C8 H112 109.5 121.5
C7 C8 C11 C9 179.6 180.0
C11 C8 C7 C6 180.2 179.9
C11 C8 C7 H7 0.2 360.0
C11 C8 C9 N10 179.4 179.9
C11 C8 C9 C13 359.6 360.0
H111 C11 N12 C13 126.0 119.2
N12 C11 H111 C8 244.1 243.0
N12 C11 H111 H112 122.0 121.5
C8 C11 H111 H112 238.0 238.5
H111 C11 C8 C7 54.2 60.8
H111 C11 C8 C9 234.6 240.8
H112 C11 N12 C13 235.5 240.7
N12 C11 H112 C8 116.0 117.1
N12 C11 H112 H111 238.0 238.5
C8 C11 H112 H111 122.0 121.5
H112 C11 C8 C7 304.7 299.3
H112 C11 C8 C9 125.1 119.3
C7 C8 C11 H111 54.2 60.8
C7 C8 C11 H112 304.7 299.3
C11 C8 C7 C9 180.4 180.0
C7 C8 C9 N10 359.8 359.9
C7 C8 C9 C13 180.0 180.0
C6 C7 C8 H7 180.0 179.9
C8 C7 C6 C5 0.7 0.1
C8 C7 C6 C1 181.7 180.1
C17 C13 C9 C8 179.9 180.2
N12 C13 C9 C8 0.8 0.0
C9 C8 C11 H111 234.6 240.8
C9 C8 C11 H112 125.1 119.3
C11 C8 C9 C7 179.7 180.0
C9 C8 C7 C6 359.8 359.9
C9 C8 C7 H7 179.8 180.0
C5 N10 C9 C8 0.1 0.1
N10 C9 C8 C13 179.8 180.0
C6 C7 C8 C9 359.8 359.9
C8 C7 C6 H7 180.0 180.1
C5 C6 C7 C1 179.1 180.0
C7 C6 C5 N10 359.1 359.9
C7 C6 C5 C4 182.4 179.9
C7 C6 C1 C2 180.0 180.0
C7 C6 C1 H1 360.0 0.0
H7 C7 C8 C9 179.8 180.0
C8 C7 H7 C6 180.0 179.9
H7 C7 C6 C5 180.8 180.0
H7 C7 C6 C1 1.7 0.0
C5 C6 C7 H7 180.8 180.0
C7 C6 C5 C1 180.9 180.0
C5 C6 C1 C2 0.9 360.0
C5 C6 C1 H1 180.9 180.0
N10 C5 C6 C4 176.7 180.0
C6 C5 N10 C9 0.5 359.9
C6 C5 C4 C3 357.1 0.1
C6 C5 C4 H4 177.1 180.1
C1 C6 C7 H7 1.7 0.0
C7 C6 C1 C5 179.0 180.0
C1 C6 C5 N10 178.2 180.0
C1 C6 C5 C4 1.5 360.0
C2 C1 C6 H1 180.0 180.0
C6 C1 C2 C3 358.2 0.1
C6 C1 C2 H2 178.2 180.0
C8 C9 N10 C5 0.1 0.1
N10 C5 C6 C1 178.2 180.0
C6 C5 N10 C4 183.3 180.0
N10 C5 C4 C3 180.2 180.1
N10 C5 C4 H4 0.2 0.1
C5 N10 C9 C13 179.9 180.1
C4 C5 C6 C1 1.5 360.0
C6 C5 C4 N10 176.8 180.0
C4 C5 N10 C9 177.2 179.9
C2 C3 C4 C5 2.1 360.0
C5 C4 C3 H3 182.2 179.9
C3 C4 C5 H4 180.0 180.0
C17 C13 C9 N10 0.1 0.2
N12 C13 C9 N10 181.0 180.1
C8 C9 N10 C13 180.2 180.0
C9 N10 C5 C4 177.2 179.9
C9 C13 C17 H17 360.0 359.9
C17 C13 C9 N12 179.1 180.1
C8 C9 C13 N10 179.8 180.0
C6 C1 C2 H1 180.0 180.0
C3 C2 C1 H2 180.0 180.1
C1 C2 C3 C4 0.3 359.9
C1 C2 C3 H3 180.3 180.0
C6 C1 H1 C2 180.0 180.0
H1 C1 C2 C3 178.2 180.1
H1 C1 C2 H2 358.2 360.0
C5 C4 C3 C2 2.1 360.0
C3 C2 C1 H1 178.2 180.1
C1 C2 C3 H2 180.0 179.9
C4 C3 C2 H3 180.0 179.9
C2 C3 C4 H4 182.1 180.0
H2 C2 C1 H1 358.2 360.0
C1 C2 H2 C3 180.0 180.1
H2 C2 C3 C4 180.3 180.0
H2 C2 C3 H3 0.3 0.1
C5 C4 C3 H4 180.0 180.0
C4 C3 C2 H2 180.3 180.0
C2 C3 C4 H3 180.0 180.1
H3 C3 C2 H2 0.3 0.1
C2 C3 H3 C4 180.0 179.9
H3 C3 C4 H4 2.2 359.9
C5 C4 H4 C3 180.0 180.0
H4 C4 C3 H3 2.2 359.9