PDB Chemical Component EFP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for EFP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N3 |
C1 |
1.451 |
1.466 |
| C45 |
C1 |
1.542 |
1.537 |
| C1 |
C32 |
1.544 |
1.537 |
| C1 |
H1 |
1.100 |
1.090 |
| C30 |
N3 |
1.354 |
1.350 |
| N3 |
C4 |
1.384 |
1.372 |
| C6 |
C4 |
1.396 |
1.352 |
| C4 |
H4 |
1.080 |
1.081 |
| N29 |
C6 |
1.382 |
1.344 |
| N7 |
C6 |
1.385 |
1.404 |
| N7 |
C9 |
1.385 |
1.349 |
| N7 |
HN7 |
1.000 |
0.970 |
| C10 |
C9 |
1.524 |
1.507 |
| C9 |
O28 |
1.239 |
1.213 |
| C13 |
C10 |
1.497 |
1.507 |
| C10 |
H10 |
1.100 |
1.090 |
| C10 |
H10A |
1.100 |
1.089 |
| C14 |
C13 |
1.401 |
1.383 |
| C13 |
C26 |
1.394 |
1.382 |
| C16 |
C14 |
1.385 |
1.382 |
| C14 |
H14 |
1.080 |
1.080 |
| C16 |
C18 |
1.399 |
1.387 |
| C16 |
H16 |
1.080 |
1.080 |
| O19 |
C18 |
1.369 |
1.359 |
| C18 |
C24 |
1.393 |
1.387 |
| C20 |
O19 |
1.434 |
1.429 |
| C20 |
H20 |
1.100 |
1.090 |
| C20 |
H20A |
1.100 |
1.090 |
| C20 |
H20B |
1.100 |
1.091 |
| C24 |
C26 |
1.412 |
1.382 |
| C24 |
H24 |
1.080 |
1.080 |
| C26 |
H26 |
1.080 |
1.080 |
| N29 |
C30 |
1.324 |
1.306 |
| C30 |
H30 |
1.080 |
1.080 |
| C35 |
C32 |
1.569 |
1.537 |
| C32 |
H32 |
1.100 |
1.090 |
| C32 |
H32A |
1.100 |
1.090 |
| C45 |
C35 |
1.566 |
1.538 |
| C35 |
N37 |
1.491 |
1.466 |
| C35 |
H35 |
1.100 |
1.090 |
| N37 |
C39 |
1.385 |
1.348 |
| N37 |
HN37 |
1.000 |
0.970 |
| C39 |
C40 |
1.516 |
1.506 |
| C39 |
O44 |
1.237 |
1.213 |
| C40 |
H40 |
1.100 |
1.090 |
| C40 |
H40A |
1.100 |
1.091 |
| C40 |
H40B |
1.100 |
1.090 |
| C45 |
H45 |
1.100 |
1.090 |
| C45 |
H45A |
1.100 |
1.091 |
Bond Angles for EFP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C1 |
C32 |
110.7 |
113.6 |
| N3 |
C1 |
H1 |
97.5 |
112.8 |
| C45 |
C1 |
H1 |
116.6 |
113.6 |
| C32 |
C1 |
H1 |
124.8 |
113.7 |
| C1 |
C32 |
H32 |
118.0 |
113.7 |
| C1 |
C32 |
H32A |
117.9 |
113.6 |
| N3 |
C4 |
H4 |
127.9 |
126.6 |
| C6 |
C4 |
H4 |
127.9 |
126.6 |
| C9 |
N7 |
HN7 |
115.5 |
119.9 |
| N7 |
C9 |
O28 |
129.6 |
120.0 |
| C10 |
C9 |
O28 |
116.5 |
120.0 |
| C13 |
C10 |
H10 |
109.2 |
109.4 |
| C13 |
C10 |
H10A |
109.2 |
109.5 |
| H10 |
C10 |
H10A |
109.8 |
109.5 |
| C14 |
C13 |
C26 |
120.3 |
120.1 |
| C13 |
C26 |
C24 |
118.3 |
120.1 |
| C13 |
C26 |
H26 |
120.9 |
120.0 |
| C16 |
C14 |
H14 |
119.5 |
120.0 |
| C18 |
C16 |
H16 |
120.2 |
120.0 |
| C16 |
C18 |
C24 |
119.7 |
119.9 |
| O19 |
C18 |
C24 |
118.5 |
120.1 |
| C18 |
C24 |
C26 |
121.2 |
119.9 |
| C18 |
C24 |
H24 |
119.4 |
120.1 |
| H20 |
C20 |
H20A |
109.4 |
109.5 |
| H20 |
C20 |
H20B |
109.5 |
109.4 |
| H20A |
C20 |
H20B |
109.5 |
109.4 |
| C26 |
C24 |
H24 |
119.4 |
120.0 |
| C24 |
C26 |
H26 |
120.8 |
120.0 |
| N29 |
C30 |
H30 |
125.0 |
125.6 |
| C35 |
C32 |
H32 |
118.0 |
113.6 |
| C35 |
C32 |
H32A |
118.0 |
113.7 |
| H32 |
C32 |
H32A |
99.8 |
112.8 |
| C45 |
C35 |
H35 |
121.7 |
113.7 |
| N37 |
C35 |
H35 |
102.8 |
112.8 |
| C35 |
N37 |
C39 |
117.6 |
120.0 |
| C35 |
N37 |
HN37 |
121.2 |
120.0 |
| C39 |
N37 |
HN37 |
121.2 |
120.0 |
| N37 |
C39 |
C40 |
114.1 |
120.0 |
| N37 |
C39 |
O44 |
122.4 |
120.0 |
| C40 |
C39 |
O44 |
123.4 |
120.0 |
| C39 |
C40 |
H40 |
109.5 |
109.5 |
| C39 |
C40 |
H40A |
109.4 |
109.4 |
| C39 |
C40 |
H40B |
109.5 |
109.5 |
| H40 |
C40 |
H40A |
109.5 |
109.5 |
| H40 |
C40 |
H40B |
109.5 |
109.5 |
| H40A |
C40 |
H40B |
109.5 |
109.4 |
| H45 |
C45 |
H45A |
99.9 |
112.9 |
Torsion Angles for EFP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C45 |
C1 |
N3 |
H1 |
126.6 |
131.2 |
| C32 |
C1 |
N3 |
H1 |
228.2 |
228.8 |
| N3 |
C1 |
C32 |
H32 |
334.8 |
25.4 |
| N3 |
C1 |
C32 |
H32A |
94.8 |
156.1 |
| N3 |
C1 |
C45 |
H1 |
242.9 |
229.2 |
| C32 |
C1 |
C45 |
H1 |
129.3 |
114.6 |
| C45 |
C1 |
C32 |
H32 |
96.5 |
140.0 |
| C45 |
C1 |
C32 |
H32A |
216.5 |
270.8 |
| N3 |
C1 |
C32 |
H1 |
115.7 |
130.8 |
| C45 |
C1 |
C32 |
H1 |
237.4 |
245.5 |
| C35 |
C32 |
C1 |
H32 |
240.0 |
245.4 |
| C35 |
C32 |
C1 |
H32A |
120.0 |
114.7 |
| H32 |
C32 |
C1 |
H32A |
240.0 |
229.2 |
| N3 |
C1 |
H1 |
C32 |
238.2 |
228.8 |
| H1 |
C1 |
C32 |
H32 |
219.1 |
254.5 |
| H1 |
C1 |
C32 |
H32A |
339.1 |
25.3 |
| C30 |
N3 |
C1 |
C32 |
237.1 |
276.2 |
| C30 |
N3 |
C1 |
H1 |
8.9 |
47.5 |
| C30 |
N3 |
C4 |
H4 |
177.7 |
180.3 |
| C4 |
N3 |
C1 |
C32 |
57.3 |
96.6 |
| C4 |
N3 |
C1 |
H1 |
189.1 |
227.8 |
| C6 |
C4 |
N3 |
H4 |
180.0 |
180.0 |
| N3 |
C4 |
C6 |
H4 |
180.0 |
180.0 |
| N29 |
C6 |
C4 |
H4 |
182.8 |
180.0 |
| N7 |
C6 |
C4 |
H4 |
355.6 |
360.0 |
| C10 |
C9 |
N7 |
O28 |
179.0 |
180.0 |
| HN7 |
N7 |
C9 |
O28 |
184.9 |
180.0 |
| C10 |
C9 |
N7 |
HN7 |
3.9 |
0.1 |
| N7 |
C9 |
C10 |
O28 |
180.9 |
180.0 |
| O28 |
C9 |
N7 |
HN7 |
184.9 |
180.0 |
| C13 |
C10 |
C9 |
O28 |
70.8 |
0.0 |
| H10 |
C10 |
C13 |
H10A |
120.0 |
120.1 |
| H10 |
C10 |
C9 |
O28 |
190.8 |
120.0 |
| C13 |
C10 |
H10 |
H10A |
240.4 |
239.9 |
| H10A |
C10 |
C9 |
O28 |
310.8 |
240.0 |
| C13 |
C10 |
H10A |
H10 |
119.6 |
120.0 |
| C14 |
C13 |
C10 |
H10 |
338.8 |
150.3 |
| C14 |
C13 |
C10 |
H10A |
218.8 |
30.2 |
| C14 |
C13 |
C26 |
C24 |
0.9 |
359.5 |
| C14 |
C13 |
C26 |
H26 |
180.9 |
179.8 |
| C26 |
C13 |
C10 |
H10 |
160.1 |
330.1 |
| C26 |
C13 |
C10 |
H10A |
40.1 |
210.0 |
| C18 |
C24 |
C26 |
C13 |
358.1 |
0.5 |
| C13 |
C26 |
C24 |
H24 |
178.1 |
180.3 |
| C24 |
C26 |
C13 |
H26 |
180.0 |
179.7 |
| C16 |
C14 |
C13 |
C26 |
0.5 |
0.2 |
| H14 |
C14 |
C13 |
C26 |
180.5 |
180.3 |
| C18 |
C16 |
C14 |
H14 |
179.1 |
180.0 |
| O19 |
C18 |
C16 |
C24 |
180.6 |
180.0 |
| C16 |
C18 |
C24 |
C26 |
1.5 |
359.8 |
| C16 |
C18 |
C24 |
H24 |
181.5 |
180.0 |
| H16 |
C16 |
C14 |
H14 |
359.1 |
0.0 |
| H16 |
C16 |
C18 |
C24 |
179.9 |
180.0 |
| O19 |
C18 |
C16 |
H16 |
0.5 |
360.0 |
| C16 |
C18 |
O19 |
C24 |
179.4 |
180.0 |
| O19 |
C18 |
C24 |
C26 |
181.0 |
179.8 |
| O19 |
C18 |
C24 |
H24 |
1.0 |
360.0 |
| C13 |
C26 |
C24 |
C18 |
358.1 |
0.5 |
| C24 |
C18 |
C16 |
H16 |
179.9 |
180.0 |
| C26 |
C24 |
C18 |
H24 |
180.0 |
179.8 |
| C18 |
C24 |
C26 |
H26 |
178.1 |
180.2 |
| C20 |
O19 |
C18 |
C24 |
245.9 |
360.0 |
| H20A |
C20 |
H20 |
H20B |
120.0 |
119.9 |
| H20 |
C20 |
H20A |
H20B |
240.0 |
240.1 |
| H20 |
C20 |
H20B |
H20A |
120.0 |
120.0 |
| C13 |
C26 |
C24 |
H26 |
180.0 |
180.3 |
| C18 |
C24 |
C26 |
H24 |
180.0 |
180.2 |
| C18 |
C24 |
H24 |
C26 |
180.0 |
179.8 |
| H24 |
C24 |
C26 |
H26 |
358.1 |
360.0 |
| C13 |
C26 |
H26 |
C24 |
180.0 |
179.7 |
| H26 |
C26 |
C24 |
H24 |
358.1 |
360.0 |
| C35 |
C32 |
C1 |
H1 |
99.1 |
140.0 |
| C1 |
C32 |
C35 |
H32 |
120.0 |
114.6 |
| C1 |
C32 |
C35 |
H32A |
240.0 |
245.4 |
| H32 |
C32 |
C35 |
H32A |
120.0 |
130.8 |
| H32 |
C32 |
C1 |
H1 |
219.1 |
254.5 |
| C1 |
C32 |
H32 |
H32A |
129.1 |
131.2 |
| C35 |
C32 |
H32 |
H32A |
230.9 |
228.7 |
| H32A |
C32 |
C1 |
H1 |
339.1 |
25.3 |
| C1 |
C32 |
H32A |
H32 |
230.9 |
228.8 |
| C35 |
C32 |
H32A |
H32 |
129.1 |
131.2 |
| C35 |
C45 |
C1 |
H1 |
254.2 |
220.0 |
| C45 |
C35 |
C32 |
H32 |
263.1 |
220.0 |
| C45 |
C35 |
C32 |
H32A |
143.1 |
89.1 |
| N37 |
C35 |
C45 |
H35 |
121.5 |
130.8 |
| C45 |
C35 |
N37 |
HN37 |
27.4 |
78.8 |
| N37 |
C35 |
C32 |
H32 |
15.1 |
334.5 |
| N37 |
C35 |
C32 |
H32A |
255.1 |
203.7 |
| C45 |
C35 |
N37 |
H35 |
228.0 |
228.8 |
| C39 |
N37 |
C35 |
HN37 |
180.0 |
180.0 |
| C35 |
N37 |
C39 |
C40 |
165.2 |
180.0 |
| C35 |
N37 |
C39 |
O44 |
343.0 |
0.0 |
| H35 |
C35 |
C32 |
H32 |
136.4 |
105.4 |
| H35 |
C35 |
C32 |
H32A |
16.4 |
334.5 |
| H35 |
C35 |
N37 |
C39 |
339.3 |
30.0 |
| H35 |
C35 |
N37 |
HN37 |
159.3 |
210.0 |
| C39 |
N37 |
C35 |
H35 |
339.3 |
30.0 |
| C35 |
N37 |
C39 |
HN37 |
180.0 |
180.0 |
| C40 |
C39 |
N37 |
O44 |
182.2 |
180.0 |
| N37 |
C39 |
C40 |
H40 |
177.8 |
0.0 |
| N37 |
C39 |
C40 |
H40A |
297.8 |
120.1 |
| N37 |
C39 |
C40 |
H40B |
57.8 |
240.0 |
| HN37 |
N37 |
C35 |
H35 |
159.3 |
210.0 |
| C35 |
N37 |
HN37 |
C39 |
180.0 |
180.0 |
| HN37 |
N37 |
C39 |
C40 |
345.1 |
360.0 |
| HN37 |
N37 |
C39 |
O44 |
163.0 |
180.0 |
| C40 |
C39 |
N37 |
HN37 |
345.1 |
360.0 |
| N37 |
C39 |
C40 |
O44 |
177.8 |
180.0 |
| H40 |
C40 |
C39 |
H40A |
240.0 |
240.0 |
| H40 |
C40 |
C39 |
H40B |
120.0 |
120.0 |
| H40A |
C40 |
C39 |
H40B |
240.0 |
240.0 |
| O44 |
C39 |
N37 |
HN37 |
163.0 |
180.0 |
| N37 |
C39 |
O44 |
C40 |
182.4 |
180.0 |
| O44 |
C39 |
C40 |
H40 |
360.0 |
180.0 |
| O44 |
C39 |
C40 |
H40A |
120.0 |
300.0 |
| O44 |
C39 |
C40 |
H40B |
240.0 |
60.0 |
| H40 |
C40 |
C39 |
O44 |
360.0 |
180.0 |
| C39 |
C40 |
H40 |
H40A |
120.0 |
120.0 |
| C39 |
C40 |
H40 |
H40B |
240.0 |
239.9 |
| H40A |
C40 |
H40 |
H40B |
120.0 |
120.0 |
| H40A |
C40 |
C39 |
O44 |
120.0 |
300.0 |
| C39 |
C40 |
H40A |
H40 |
240.0 |
240.0 |
| C39 |
C40 |
H40A |
H40B |
120.0 |
120.0 |
| H40 |
C40 |
H40A |
H40B |
240.0 |
240.0 |
| H40B |
C40 |
C39 |
O44 |
240.0 |
60.0 |
| C39 |
C40 |
H40B |
H40 |
120.0 |
120.0 |
| C39 |
C40 |
H40B |
H40A |
240.0 |
240.0 |
| H40 |
C40 |
H40B |
H40A |
120.0 |
120.0 |
| H45 |
C45 |
C1 |
H1 |
14.2 |
334.5 |
| H45 |
C45 |
C35 |
H35 |
344.3 |
25.4 |
| H45A |
C45 |
C1 |
H1 |
134.2 |
105.5 |
| H45A |
C45 |
C35 |
H35 |
224.3 |
254.6 |