PDB Chemical Component EEM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for EEM

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.322 1.321
C2 N3 1.322 1.316
C2 H2 1.080 1.080
C4 N3 1.342 1.328
C5 C4 1.388 1.405
N9 C4 1.329 1.372
N9 C1' 1.482 1.466
C1' O4' 1.439 1.444
C1' C2' 1.529 1.544
C1' H1' 1.100 1.090
O2' C2' 1.429 1.429
C2' C3' 1.527 1.545
C2' H2' 1.100 1.089
C4' C3' 1.529 1.545
O3' C3' 1.428 1.430
C3' H3' 1.100 1.090
O4' C4' 1.438 1.445
C4' C5' 1.529 1.530
C4' H4' 1.100 1.089
C5' H5' 1.100 1.090
C5' H5'A 1.100 1.090
C5' SE 1.859 1.961
C O 1.250 1.208
CA C 1.532 1.506
C OXT 1.251 1.342
OXT HOXT 0.950 0.967
CB CA 1.530 1.530
N CA 1.470 1.470
CA HA 1.100 1.091
N HN 1.000 1.009
N HNA 0.999 1.009
CB CG 1.531 1.531
CB HB 1.100 1.090
CB HBA 1.100 1.090
SE CG 1.859 1.960
CG HG 1.100 1.090
CG HGA 1.100 1.090
SE CE 1.845 1.960
CE HE 1.100 1.091
CE HEA 1.100 1.090
CE HEB 1.100 1.089
O3' HO3' 0.950 0.967
O2' HO2' 0.949 0.968
C8 N9 1.333 1.363
N7 C8 1.331 1.301
C8 H8 1.080 1.080
N7 C5 1.328 1.354
C6 C5 1.390 1.406
C6 N1 1.339 1.329
N6 C6 1.329 1.384
N6 HN6 1.000 0.970
N6 HN6A 1.000 0.971

Bond Angles for EEM

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N1 C2 H2 119.1 118.7
N3 C2 H2 119.1 118.9
N9 C1' H1' 105.3 110.4
C2' C1' O4' 106.6 104.8
O4' C1' H1' 111.0 110.4
C1' O4' C4' 108.0 105.3
C2' C1' H1' 110.4 110.4
C1' C2' C3' 99.6 104.1
C1' C2' H2' 115.7 110.5
O2' C2' H2' 107.5 110.6
C3' C2' H2' 115.9 110.5
C2' C3' H3' 115.6 110.5
C4' C3' H3' 116.0 110.5
O3' C3' H3' 106.3 110.4
O4' C4' H4' 112.5 110.5
C5' C4' H4' 110.2 110.4
C4' C5' H5' 108.1 109.5
C4' C5' H5'A 107.2 109.5
C4' C5' SE 113.6 109.4
H5' C5' H5'A 112.8 109.4
SE C5' H5' 108.1 109.4
SE C5' H5'A 107.2 109.5
C5' SE CG 107.6 101.0
C5' SE CE 101.6 101.0
C OXT HOXT 109.5 117.0
CB CA HA 110.2 109.5
N CA HA 109.5 109.4
HN N HNA 109.5 111.1
CG CB HB 108.6 109.5
CG CB HBA 108.0 109.4
CB CG HG 109.0 109.5
CB CG HGA 108.6 109.4
HB CB HBA 111.5 109.5
SE CG HG 109.0 109.5
SE CG HGA 108.6 109.5
HG CG HGA 110.6 109.5
SE CE HE 109.5 109.5
SE CE HEA 109.5 109.5
SE CE HEB 109.4 109.5
HE CE HEA 109.4 109.4
HE CE HEB 109.5 109.5
HEA CE HEB 109.5 109.5
N7 C8 H8 125.1 125.1
HN6 N6 HN6A 109.4 120.1

Torsion Angles for EEM

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N3 C2 N1 H2 180.0 179.7
N1 C2 N3 H2 180.0 180.3
C4 N3 C2 H2 180.1 180.0
O4' C1' N9 H1' 239.5 237.7
C2' C1' N9 H1' 120.1 122.3
N9 C1' C2' H2' 30.9 24.2
N9 C1' O4' H1' 117.1 122.3
C2' C1' O4' H1' 239.8 241.1
O4' C1' C2' C3' 33.4 24.0
O4' C1' C2' H2' 268.5 265.3
C1' O4' C4' H4' 214.5 281.6
N9 C1' C2' H1' 243.0 237.7
O4' C1' C2' H1' 120.6 118.9
C2' C1' O4' C4' 352.4 319.5
O2' C2' C1' H2' 238.7 237.3
C3' C2' C1' H2' 124.9 118.7
C1' C2' C3' H3' 190.8 241.3
C2' C1' H1' O4' 117.9 115.4
H1' C1' O4' C4' 112.7 78.3
H1' C1' C2' C3' 272.8 265.1
H1' C1' C2' H2' 147.9 146.5
O2' C2' C1' H1' 26.6 23.8
C1' C2' O2' H2' 126.1 122.7
C3' C2' O2' H2' 233.8 237.3
O2' C2' C3' H3' 76.9 122.7
C3' C2' C1' O4' 33.4 24.0
C3' C2' C1' H1' 272.8 265.1
C1' C2' C3' H2' 235.2 241.4
O2' C2' C3' H2' 121.2 122.7
C4' C3' C2' H3' 124.8 118.7
O3' C3' C2' H3' 239.7 237.4
H2' C2' C1' O4' 268.5 265.3
H2' C2' C1' H1' 147.9 146.5
C1' C2' H2' C3' 116.1 114.6
H2' C2' C3' H3' 315.6 360.0
C1' O4' C4' C3' 338.2 40.5
C4' C3' C2' H2' 80.4 118.7
C2' C3' C4' H3' 235.5 241.3
O3' C3' C4' H3' 120.3 122.6
O3' C3' C2' H2' 195.3 237.4
C2' C3' O3' H3' 125.8 122.6
C4' C3' O3' H3' 234.0 237.4
H3' C3' C2' H2' 315.6 360.0
C4' O4' C1' H1' 112.7 78.3
O4' C4' C3' H3' 166.5 94.7
C5' C4' O4' H4' 237.9 237.6
O4' C4' C5' H5' 189.8 189.6
O4' C4' C5' H5'A 311.6 309.6
C1' O4' C4' C5' 92.4 159.3
C5' C4' C3' H3' 51.5 335.9
O4' C4' C5' H4' 123.5 122.4
H5' C5' C4' H5'A 238.2 240.0
SE C5' C4' H5' 240.0 240.0
SE C5' C4' H5'A 118.2 120.0
C4' C5' SE CG 162.7 180.0
C4' C5' SE CE 58.0 76.3
H4' C4' C3' H3' 289.6 213.6
H4' C4' C5' H5' 66.3 67.2
H4' C4' C5' H5'A 188.1 187.2
H4' C4' C5' SE 306.3 307.3
H5' C5' C4' H4' 66.3 67.2
C4' C5' H5' H5'A 118.3 120.0
C4' C5' H5' SE 236.6 240.0
SE C5' H5' H5'A 241.7 240.0
H5' C5' SE CG 42.7 60.0
H5' C5' SE CE 298.0 316.3
H5'A C5' C4' H4' 188.1 187.2
C4' C5' H5'A H5' 241.1 240.0
C4' C5' H5'A SE 122.3 120.0
SE C5' H5'A H5' 118.8 120.0
H5'A C5' SE CG 280.9 300.0
H5'A C5' SE CE 176.2 196.4
SE C5' C4' H4' 306.3 307.3
C4' C5' SE H5' 120.0 120.0
C4' C5' SE H5'A 241.8 240.0
H5' C5' SE H5'A 121.8 120.0
C5' SE CG HG 280.9 60.0
C5' SE CG HGA 160.3 300.0
C5' SE CE HE 76.7 60.0
C5' SE CE HEA 196.7 179.9
C5' SE CE HEB 316.7 300.0
CA C OXT HOXT 179.4 180.0
N CA CB HA 239.9 240.1
CB CA N HA 120.6 120.0
HN N CA HA 273.0 56.1
HNA N CA HA 33.0 180.1
C5' SE CG CB 40.9 180.0
CG CB CA HA 304.0 54.9
HB CB CG HBA 121.1 120.0
SE CG CB HG 240.0 240.0
SE CG CB HGA 119.4 120.0
HG CG CB HGA 239.4 240.0
HB CB CA HA 64.0 174.9
CG CB HB HBA 241.1 240.0
HB CB CG HG 192.1 180.0
HB CB CG HGA 312.7 300.0
HBA CB CA HA 185.1 295.0
CG CB HBA HB 119.3 120.0
HBA CB CG HG 71.0 60.0
HBA CB CG HGA 191.6 180.0
CG SE C5' H5' 42.7 60.0
CG SE C5' H5'A 280.9 300.0
C5' SE CG CE 254.2 256.4
SE CG CB HB 72.1 60.0
SE CG CB HBA 311.0 300.0
CB CG SE HG 120.0 120.0
CB CG SE HGA 240.6 240.0
HG CG SE HGA 120.6 120.0
HG CG CB HB 192.1 180.0
HG CG CB HBA 71.0 60.0
CB CG HG HGA 119.4 120.0
SE CG HG HGA 240.6 240.0
HGA CG CB HB 312.7 300.0
HGA CG CB HBA 191.6 180.0
CB CG HGA HG 240.4 240.0
SE CG HGA HG 119.6 120.0
CE SE C5' H5' 298.0 316.3
CE SE C5' H5'A 176.2 196.4
C5' SE CE CG 110.5 103.6
CE SE CG HG 26.6 163.6
CE SE CG HGA 266.0 43.6
HE CE SE HEA 240.0 240.1
HE CE SE HEB 120.0 120.0
HEA CE SE HEB 240.0 239.9
SE CE HE HEA 120.0 120.0
SE CE HE HEB 240.0 240.0
HEA CE HE HEB 120.0 120.0
SE CE HEA HE 240.0 240.0
SE CE HEA HEB 120.0 120.1
HE CE HEA HEB 240.0 240.0
SE CE HEB HE 120.0 120.0
SE CE HEB HEA 240.0 239.9
HE CE HEB HEA 120.0 119.9
HO3' O3' C3' H3' 30.9 298.8
HO2' O2' C2' H2' 273.4 57.4
C8 N9 C1' H1' 10.7 146.0
C5 N7 C8 H8 179.9 180.1
C6 N1 C2 H2 180.1 179.9