PDB Chemical Component EEM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for EEM
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.322 |
1.321 |
C2 |
N3 |
1.322 |
1.316 |
C2 |
H2 |
1.080 |
1.080 |
C4 |
N3 |
1.342 |
1.328 |
C5 |
C4 |
1.388 |
1.405 |
N9 |
C4 |
1.329 |
1.372 |
N9 |
C1' |
1.482 |
1.466 |
C1' |
O4' |
1.439 |
1.444 |
C1' |
C2' |
1.529 |
1.544 |
C1' |
H1' |
1.100 |
1.090 |
O2' |
C2' |
1.429 |
1.429 |
C2' |
C3' |
1.527 |
1.545 |
C2' |
H2' |
1.100 |
1.089 |
C4' |
C3' |
1.529 |
1.545 |
O3' |
C3' |
1.428 |
1.430 |
C3' |
H3' |
1.100 |
1.090 |
O4' |
C4' |
1.438 |
1.445 |
C4' |
C5' |
1.529 |
1.530 |
C4' |
H4' |
1.100 |
1.089 |
C5' |
H5' |
1.100 |
1.090 |
C5' |
H5'A |
1.100 |
1.090 |
C5' |
SE |
1.859 |
1.961 |
C |
O |
1.250 |
1.208 |
CA |
C |
1.532 |
1.506 |
C |
OXT |
1.251 |
1.342 |
OXT |
HOXT |
0.950 |
0.967 |
CB |
CA |
1.530 |
1.530 |
N |
CA |
1.470 |
1.470 |
CA |
HA |
1.100 |
1.091 |
N |
HN |
1.000 |
1.009 |
N |
HNA |
0.999 |
1.009 |
CB |
CG |
1.531 |
1.531 |
CB |
HB |
1.100 |
1.090 |
CB |
HBA |
1.100 |
1.090 |
SE |
CG |
1.859 |
1.960 |
CG |
HG |
1.100 |
1.090 |
CG |
HGA |
1.100 |
1.090 |
SE |
CE |
1.845 |
1.960 |
CE |
HE |
1.100 |
1.091 |
CE |
HEA |
1.100 |
1.090 |
CE |
HEB |
1.100 |
1.089 |
O3' |
HO3' |
0.950 |
0.967 |
O2' |
HO2' |
0.949 |
0.968 |
C8 |
N9 |
1.333 |
1.363 |
N7 |
C8 |
1.331 |
1.301 |
C8 |
H8 |
1.080 |
1.080 |
N7 |
C5 |
1.328 |
1.354 |
C6 |
C5 |
1.390 |
1.406 |
C6 |
N1 |
1.339 |
1.329 |
N6 |
C6 |
1.329 |
1.384 |
N6 |
HN6 |
1.000 |
0.970 |
N6 |
HN6A |
1.000 |
0.971 |
Bond Angles for EEM
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N1 |
C2 |
H2 |
119.1 |
118.7 |
N3 |
C2 |
H2 |
119.1 |
118.9 |
N9 |
C1' |
H1' |
105.3 |
110.4 |
C2' |
C1' |
O4' |
106.6 |
104.8 |
O4' |
C1' |
H1' |
111.0 |
110.4 |
C1' |
O4' |
C4' |
108.0 |
105.3 |
C2' |
C1' |
H1' |
110.4 |
110.4 |
C1' |
C2' |
C3' |
99.6 |
104.1 |
C1' |
C2' |
H2' |
115.7 |
110.5 |
O2' |
C2' |
H2' |
107.5 |
110.6 |
C3' |
C2' |
H2' |
115.9 |
110.5 |
C2' |
C3' |
H3' |
115.6 |
110.5 |
C4' |
C3' |
H3' |
116.0 |
110.5 |
O3' |
C3' |
H3' |
106.3 |
110.4 |
O4' |
C4' |
H4' |
112.5 |
110.5 |
C5' |
C4' |
H4' |
110.2 |
110.4 |
C4' |
C5' |
H5' |
108.1 |
109.5 |
C4' |
C5' |
H5'A |
107.2 |
109.5 |
C4' |
C5' |
SE |
113.6 |
109.4 |
H5' |
C5' |
H5'A |
112.8 |
109.4 |
SE |
C5' |
H5' |
108.1 |
109.4 |
SE |
C5' |
H5'A |
107.2 |
109.5 |
C5' |
SE |
CG |
107.6 |
101.0 |
C5' |
SE |
CE |
101.6 |
101.0 |
C |
OXT |
HOXT |
109.5 |
117.0 |
CB |
CA |
HA |
110.2 |
109.5 |
N |
CA |
HA |
109.5 |
109.4 |
HN |
N |
HNA |
109.5 |
111.1 |
CG |
CB |
HB |
108.6 |
109.5 |
CG |
CB |
HBA |
108.0 |
109.4 |
CB |
CG |
HG |
109.0 |
109.5 |
CB |
CG |
HGA |
108.6 |
109.4 |
HB |
CB |
HBA |
111.5 |
109.5 |
SE |
CG |
HG |
109.0 |
109.5 |
SE |
CG |
HGA |
108.6 |
109.5 |
HG |
CG |
HGA |
110.6 |
109.5 |
SE |
CE |
HE |
109.5 |
109.5 |
SE |
CE |
HEA |
109.5 |
109.5 |
SE |
CE |
HEB |
109.4 |
109.5 |
HE |
CE |
HEA |
109.4 |
109.4 |
HE |
CE |
HEB |
109.5 |
109.5 |
HEA |
CE |
HEB |
109.5 |
109.5 |
N7 |
C8 |
H8 |
125.1 |
125.1 |
HN6 |
N6 |
HN6A |
109.4 |
120.1 |
Torsion Angles for EEM
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N3 |
C2 |
N1 |
H2 |
180.0 |
179.7 |
N1 |
C2 |
N3 |
H2 |
180.0 |
180.3 |
C4 |
N3 |
C2 |
H2 |
180.1 |
180.0 |
O4' |
C1' |
N9 |
H1' |
239.5 |
237.7 |
C2' |
C1' |
N9 |
H1' |
120.1 |
122.3 |
N9 |
C1' |
C2' |
H2' |
30.9 |
24.2 |
N9 |
C1' |
O4' |
H1' |
117.1 |
122.3 |
C2' |
C1' |
O4' |
H1' |
239.8 |
241.1 |
O4' |
C1' |
C2' |
C3' |
33.4 |
24.0 |
O4' |
C1' |
C2' |
H2' |
268.5 |
265.3 |
C1' |
O4' |
C4' |
H4' |
214.5 |
281.6 |
N9 |
C1' |
C2' |
H1' |
243.0 |
237.7 |
O4' |
C1' |
C2' |
H1' |
120.6 |
118.9 |
C2' |
C1' |
O4' |
C4' |
352.4 |
319.5 |
O2' |
C2' |
C1' |
H2' |
238.7 |
237.3 |
C3' |
C2' |
C1' |
H2' |
124.9 |
118.7 |
C1' |
C2' |
C3' |
H3' |
190.8 |
241.3 |
C2' |
C1' |
H1' |
O4' |
117.9 |
115.4 |
H1' |
C1' |
O4' |
C4' |
112.7 |
78.3 |
H1' |
C1' |
C2' |
C3' |
272.8 |
265.1 |
H1' |
C1' |
C2' |
H2' |
147.9 |
146.5 |
O2' |
C2' |
C1' |
H1' |
26.6 |
23.8 |
C1' |
C2' |
O2' |
H2' |
126.1 |
122.7 |
C3' |
C2' |
O2' |
H2' |
233.8 |
237.3 |
O2' |
C2' |
C3' |
H3' |
76.9 |
122.7 |
C3' |
C2' |
C1' |
O4' |
33.4 |
24.0 |
C3' |
C2' |
C1' |
H1' |
272.8 |
265.1 |
C1' |
C2' |
C3' |
H2' |
235.2 |
241.4 |
O2' |
C2' |
C3' |
H2' |
121.2 |
122.7 |
C4' |
C3' |
C2' |
H3' |
124.8 |
118.7 |
O3' |
C3' |
C2' |
H3' |
239.7 |
237.4 |
H2' |
C2' |
C1' |
O4' |
268.5 |
265.3 |
H2' |
C2' |
C1' |
H1' |
147.9 |
146.5 |
C1' |
C2' |
H2' |
C3' |
116.1 |
114.6 |
H2' |
C2' |
C3' |
H3' |
315.6 |
360.0 |
C1' |
O4' |
C4' |
C3' |
338.2 |
40.5 |
C4' |
C3' |
C2' |
H2' |
80.4 |
118.7 |
C2' |
C3' |
C4' |
H3' |
235.5 |
241.3 |
O3' |
C3' |
C4' |
H3' |
120.3 |
122.6 |
O3' |
C3' |
C2' |
H2' |
195.3 |
237.4 |
C2' |
C3' |
O3' |
H3' |
125.8 |
122.6 |
C4' |
C3' |
O3' |
H3' |
234.0 |
237.4 |
H3' |
C3' |
C2' |
H2' |
315.6 |
360.0 |
C4' |
O4' |
C1' |
H1' |
112.7 |
78.3 |
O4' |
C4' |
C3' |
H3' |
166.5 |
94.7 |
C5' |
C4' |
O4' |
H4' |
237.9 |
237.6 |
O4' |
C4' |
C5' |
H5' |
189.8 |
189.6 |
O4' |
C4' |
C5' |
H5'A |
311.6 |
309.6 |
C1' |
O4' |
C4' |
C5' |
92.4 |
159.3 |
C5' |
C4' |
C3' |
H3' |
51.5 |
335.9 |
O4' |
C4' |
C5' |
H4' |
123.5 |
122.4 |
H5' |
C5' |
C4' |
H5'A |
238.2 |
240.0 |
SE |
C5' |
C4' |
H5' |
240.0 |
240.0 |
SE |
C5' |
C4' |
H5'A |
118.2 |
120.0 |
C4' |
C5' |
SE |
CG |
162.7 |
180.0 |
C4' |
C5' |
SE |
CE |
58.0 |
76.3 |
H4' |
C4' |
C3' |
H3' |
289.6 |
213.6 |
H4' |
C4' |
C5' |
H5' |
66.3 |
67.2 |
H4' |
C4' |
C5' |
H5'A |
188.1 |
187.2 |
H4' |
C4' |
C5' |
SE |
306.3 |
307.3 |
H5' |
C5' |
C4' |
H4' |
66.3 |
67.2 |
C4' |
C5' |
H5' |
H5'A |
118.3 |
120.0 |
C4' |
C5' |
H5' |
SE |
236.6 |
240.0 |
SE |
C5' |
H5' |
H5'A |
241.7 |
240.0 |
H5' |
C5' |
SE |
CG |
42.7 |
60.0 |
H5' |
C5' |
SE |
CE |
298.0 |
316.3 |
H5'A |
C5' |
C4' |
H4' |
188.1 |
187.2 |
C4' |
C5' |
H5'A |
H5' |
241.1 |
240.0 |
C4' |
C5' |
H5'A |
SE |
122.3 |
120.0 |
SE |
C5' |
H5'A |
H5' |
118.8 |
120.0 |
H5'A |
C5' |
SE |
CG |
280.9 |
300.0 |
H5'A |
C5' |
SE |
CE |
176.2 |
196.4 |
SE |
C5' |
C4' |
H4' |
306.3 |
307.3 |
C4' |
C5' |
SE |
H5' |
120.0 |
120.0 |
C4' |
C5' |
SE |
H5'A |
241.8 |
240.0 |
H5' |
C5' |
SE |
H5'A |
121.8 |
120.0 |
C5' |
SE |
CG |
HG |
280.9 |
60.0 |
C5' |
SE |
CG |
HGA |
160.3 |
300.0 |
C5' |
SE |
CE |
HE |
76.7 |
60.0 |
C5' |
SE |
CE |
HEA |
196.7 |
179.9 |
C5' |
SE |
CE |
HEB |
316.7 |
300.0 |
CA |
C |
OXT |
HOXT |
179.4 |
180.0 |
N |
CA |
CB |
HA |
239.9 |
240.1 |
CB |
CA |
N |
HA |
120.6 |
120.0 |
HN |
N |
CA |
HA |
273.0 |
56.1 |
HNA |
N |
CA |
HA |
33.0 |
180.1 |
C5' |
SE |
CG |
CB |
40.9 |
180.0 |
CG |
CB |
CA |
HA |
304.0 |
54.9 |
HB |
CB |
CG |
HBA |
121.1 |
120.0 |
SE |
CG |
CB |
HG |
240.0 |
240.0 |
SE |
CG |
CB |
HGA |
119.4 |
120.0 |
HG |
CG |
CB |
HGA |
239.4 |
240.0 |
HB |
CB |
CA |
HA |
64.0 |
174.9 |
CG |
CB |
HB |
HBA |
241.1 |
240.0 |
HB |
CB |
CG |
HG |
192.1 |
180.0 |
HB |
CB |
CG |
HGA |
312.7 |
300.0 |
HBA |
CB |
CA |
HA |
185.1 |
295.0 |
CG |
CB |
HBA |
HB |
119.3 |
120.0 |
HBA |
CB |
CG |
HG |
71.0 |
60.0 |
HBA |
CB |
CG |
HGA |
191.6 |
180.0 |
CG |
SE |
C5' |
H5' |
42.7 |
60.0 |
CG |
SE |
C5' |
H5'A |
280.9 |
300.0 |
C5' |
SE |
CG |
CE |
254.2 |
256.4 |
SE |
CG |
CB |
HB |
72.1 |
60.0 |
SE |
CG |
CB |
HBA |
311.0 |
300.0 |
CB |
CG |
SE |
HG |
120.0 |
120.0 |
CB |
CG |
SE |
HGA |
240.6 |
240.0 |
HG |
CG |
SE |
HGA |
120.6 |
120.0 |
HG |
CG |
CB |
HB |
192.1 |
180.0 |
HG |
CG |
CB |
HBA |
71.0 |
60.0 |
CB |
CG |
HG |
HGA |
119.4 |
120.0 |
SE |
CG |
HG |
HGA |
240.6 |
240.0 |
HGA |
CG |
CB |
HB |
312.7 |
300.0 |
HGA |
CG |
CB |
HBA |
191.6 |
180.0 |
CB |
CG |
HGA |
HG |
240.4 |
240.0 |
SE |
CG |
HGA |
HG |
119.6 |
120.0 |
CE |
SE |
C5' |
H5' |
298.0 |
316.3 |
CE |
SE |
C5' |
H5'A |
176.2 |
196.4 |
C5' |
SE |
CE |
CG |
110.5 |
103.6 |
CE |
SE |
CG |
HG |
26.6 |
163.6 |
CE |
SE |
CG |
HGA |
266.0 |
43.6 |
HE |
CE |
SE |
HEA |
240.0 |
240.1 |
HE |
CE |
SE |
HEB |
120.0 |
120.0 |
HEA |
CE |
SE |
HEB |
240.0 |
239.9 |
SE |
CE |
HE |
HEA |
120.0 |
120.0 |
SE |
CE |
HE |
HEB |
240.0 |
240.0 |
HEA |
CE |
HE |
HEB |
120.0 |
120.0 |
SE |
CE |
HEA |
HE |
240.0 |
240.0 |
SE |
CE |
HEA |
HEB |
120.0 |
120.1 |
HE |
CE |
HEA |
HEB |
240.0 |
240.0 |
SE |
CE |
HEB |
HE |
120.0 |
120.0 |
SE |
CE |
HEB |
HEA |
240.0 |
239.9 |
HE |
CE |
HEB |
HEA |
120.0 |
119.9 |
HO3' |
O3' |
C3' |
H3' |
30.9 |
298.8 |
HO2' |
O2' |
C2' |
H2' |
273.4 |
57.4 |
C8 |
N9 |
C1' |
H1' |
10.7 |
146.0 |
C5 |
N7 |
C8 |
H8 |
179.9 |
180.1 |
C6 |
N1 |
C2 |
H2 |
180.1 |
179.9 |