PDB Chemical Component EDR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for EDR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.381 |
1.383 |
| C1 |
C6 |
1.399 |
1.383 |
| C1 |
H1 |
1.103 |
1.080 |
| C2 |
C3 |
1.401 |
1.381 |
| C2 |
N2 |
1.490 |
1.397 |
| C3 |
C4 |
1.391 |
1.388 |
| C3 |
H3 |
1.102 |
1.081 |
| C4 |
C5 |
1.394 |
1.386 |
| C4 |
O4 |
1.359 |
1.359 |
| C5 |
C6 |
1.390 |
1.381 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
H6 |
1.103 |
1.080 |
| O4 |
HO4 |
0.950 |
0.967 |
| N2 |
C7 |
1.556 |
1.469 |
| N2 |
C8 |
1.558 |
1.469 |
| N2 |
C9 |
1.540 |
1.469 |
| C7 |
H71 |
1.115 |
1.090 |
| C7 |
H72 |
1.115 |
1.090 |
| C7 |
H73 |
1.116 |
1.090 |
| C8 |
H81 |
1.115 |
1.090 |
| C8 |
H82 |
1.116 |
1.090 |
| C8 |
H83 |
1.115 |
1.090 |
| C9 |
C10 |
1.562 |
1.530 |
| C9 |
H91 |
1.115 |
1.090 |
| C9 |
H92 |
1.115 |
1.090 |
| C10 |
H101 |
1.114 |
1.089 |
| C10 |
H102 |
1.116 |
1.090 |
| C10 |
H103 |
1.115 |
1.091 |
Bond Angles for EDR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
123.0 |
120.1 |
| C2 |
C1 |
H1 |
117.9 |
119.9 |
| C1 |
C2 |
C3 |
117.4 |
120.0 |
| C1 |
C2 |
N2 |
125.6 |
120.0 |
| C6 |
C1 |
H1 |
119.1 |
120.0 |
| C1 |
C6 |
C5 |
118.8 |
120.0 |
| C1 |
C6 |
H6 |
121.0 |
120.0 |
| C3 |
C2 |
N2 |
116.9 |
120.0 |
| C2 |
C3 |
C4 |
120.5 |
120.0 |
| C2 |
C3 |
H3 |
120.1 |
120.0 |
| C2 |
N2 |
C7 |
112.1 |
109.5 |
| C2 |
N2 |
C8 |
107.3 |
109.5 |
| C2 |
N2 |
C9 |
110.0 |
109.5 |
| C4 |
C3 |
H3 |
119.4 |
120.0 |
| C3 |
C4 |
C5 |
121.0 |
119.9 |
| C3 |
C4 |
O4 |
120.9 |
120.0 |
| C5 |
C4 |
O4 |
118.0 |
120.1 |
| C4 |
C5 |
C6 |
119.2 |
120.0 |
| C4 |
C5 |
H5 |
120.5 |
120.0 |
| C4 |
O4 |
HO4 |
120.9 |
106.8 |
| C6 |
C5 |
H5 |
120.2 |
120.0 |
| C5 |
C6 |
H6 |
120.3 |
120.0 |
| C7 |
N2 |
C8 |
107.1 |
109.4 |
| C7 |
N2 |
C9 |
108.6 |
109.5 |
| N2 |
C7 |
H71 |
112.1 |
109.5 |
| N2 |
C7 |
H72 |
111.3 |
109.5 |
| N2 |
C7 |
H73 |
111.2 |
109.4 |
| C8 |
N2 |
C9 |
111.7 |
109.5 |
| N2 |
C8 |
H81 |
107.3 |
109.5 |
| N2 |
C8 |
H82 |
113.0 |
109.5 |
| N2 |
C8 |
H83 |
113.0 |
109.5 |
| N2 |
C9 |
C10 |
118.7 |
109.5 |
| N2 |
C9 |
H91 |
108.8 |
109.5 |
| N2 |
C9 |
H92 |
108.8 |
109.5 |
| H71 |
C7 |
H72 |
111.3 |
109.5 |
| H71 |
C7 |
H73 |
111.2 |
109.5 |
| H72 |
C7 |
H73 |
99.1 |
109.4 |
| H81 |
C8 |
H82 |
113.0 |
109.5 |
| H81 |
C8 |
H83 |
113.1 |
109.4 |
| H82 |
C8 |
H83 |
97.4 |
109.5 |
| C10 |
C9 |
H91 |
108.9 |
109.5 |
| C10 |
C9 |
H92 |
108.9 |
109.5 |
| C9 |
C10 |
H101 |
118.7 |
109.4 |
| C9 |
C10 |
H102 |
108.9 |
109.5 |
| C9 |
C10 |
H103 |
108.8 |
109.5 |
| H91 |
C9 |
H92 |
101.2 |
109.4 |
| H101 |
C10 |
H102 |
108.9 |
109.5 |
| H101 |
C10 |
H103 |
108.9 |
109.5 |
| H102 |
C10 |
H103 |
101.1 |
109.4 |
Torsion Angles for EDR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
H1 |
179.9 |
180.0 |
| C2 |
C1 |
C6 |
C5 |
359.4 |
360.0 |
| C2 |
C1 |
C6 |
H6 |
179.4 |
180.0 |
| C3 |
C2 |
C1 |
N2 |
182.3 |
180.3 |
| C1 |
C2 |
C3 |
C4 |
359.6 |
359.5 |
| C1 |
C2 |
C3 |
H3 |
179.6 |
180.0 |
| C1 |
C2 |
N2 |
C7 |
205.2 |
240.0 |
| C1 |
C2 |
N2 |
C8 |
322.5 |
120.0 |
| C1 |
C2 |
N2 |
C9 |
84.2 |
360.0 |
| C2 |
C1 |
C6 |
H1 |
180.1 |
180.0 |
| C6 |
C1 |
C2 |
C3 |
1.3 |
0.3 |
| C6 |
C1 |
C2 |
N2 |
179.0 |
180.0 |
| C4 |
C5 |
C6 |
C1 |
358.9 |
359.9 |
| C1 |
C6 |
C5 |
H5 |
179.0 |
180.0 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
| C2 |
C1 |
H1 |
C6 |
179.9 |
180.0 |
| H1 |
C1 |
C2 |
C3 |
181.4 |
180.3 |
| H1 |
C1 |
C2 |
N2 |
359.1 |
0.0 |
| H1 |
C1 |
C6 |
C5 |
179.3 |
180.0 |
| H1 |
C1 |
C6 |
H6 |
359.3 |
0.0 |
| C3 |
C2 |
C1 |
C6 |
1.3 |
0.3 |
| C3 |
C2 |
C1 |
H1 |
181.4 |
180.3 |
| C1 |
C2 |
C3 |
N2 |
177.9 |
179.7 |
| C3 |
C2 |
N2 |
C7 |
22.9 |
59.7 |
| C3 |
C2 |
N2 |
C8 |
140.2 |
299.7 |
| C3 |
C2 |
N2 |
C9 |
261.9 |
179.7 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
179.5 |
| C2 |
C3 |
C4 |
C5 |
358.7 |
0.5 |
| C2 |
C3 |
C4 |
O4 |
182.9 |
180.3 |
| N2 |
C2 |
C1 |
C6 |
179.0 |
180.0 |
| N2 |
C2 |
C1 |
H1 |
359.1 |
0.0 |
| C1 |
C2 |
N2 |
C3 |
182.3 |
180.3 |
| N2 |
C2 |
C3 |
C4 |
181.8 |
179.8 |
| N2 |
C2 |
C3 |
H3 |
1.7 |
0.3 |
| C7 |
N2 |
C2 |
C8 |
242.7 |
120.0 |
| C7 |
N2 |
C2 |
C9 |
121.0 |
240.0 |
| C2 |
N2 |
C7 |
H71 |
180.0 |
180.0 |
| C2 |
N2 |
C7 |
H72 |
305.3 |
300.0 |
| C2 |
N2 |
C7 |
H73 |
54.7 |
60.0 |
| C8 |
N2 |
C2 |
C9 |
238.3 |
120.0 |
| C2 |
N2 |
C8 |
H81 |
180.0 |
300.0 |
| C2 |
N2 |
C8 |
H82 |
305.3 |
60.0 |
| C2 |
N2 |
C8 |
H83 |
54.7 |
180.0 |
| C2 |
N2 |
C9 |
C10 |
75.9 |
180.0 |
| C2 |
N2 |
C9 |
H91 |
201.1 |
60.0 |
| C2 |
N2 |
C9 |
H92 |
310.6 |
300.0 |
| C4 |
C3 |
C2 |
N2 |
181.8 |
179.8 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.5 |
| C5 |
C4 |
C3 |
O4 |
175.7 |
180.2 |
| C3 |
C4 |
C5 |
C6 |
2.1 |
359.8 |
| C3 |
C4 |
C5 |
H5 |
182.0 |
179.8 |
| C3 |
C4 |
O4 |
HO4 |
180.1 |
270.2 |
| H3 |
C3 |
C2 |
N2 |
1.7 |
0.3 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
179.5 |
| H3 |
C3 |
C4 |
C5 |
178.7 |
180.0 |
| H3 |
C3 |
C4 |
O4 |
3.0 |
359.8 |
| C1 |
C6 |
C5 |
C4 |
358.9 |
359.9 |
| C5 |
C4 |
C3 |
H3 |
178.7 |
180.0 |
| C3 |
C4 |
C5 |
O4 |
184.1 |
179.8 |
| C5 |
C4 |
O4 |
HO4 |
4.2 |
90.1 |
| C6 |
C5 |
C4 |
H5 |
180.1 |
180.0 |
| C4 |
C5 |
C6 |
H6 |
178.9 |
179.9 |
| O4 |
C4 |
C3 |
H3 |
3.0 |
359.8 |
| C3 |
C4 |
O4 |
C5 |
175.9 |
180.2 |
| O4 |
C4 |
C5 |
C6 |
177.9 |
180.0 |
| O4 |
C4 |
C5 |
H5 |
357.9 |
360.0 |
| C5 |
C6 |
C1 |
H1 |
179.3 |
180.0 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
O4 |
177.9 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
179.9 |
180.0 |
| H5 |
C5 |
C4 |
O4 |
357.9 |
360.0 |
| C4 |
C5 |
H5 |
C6 |
180.1 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
358.9 |
359.9 |
| H6 |
C6 |
C1 |
H1 |
359.3 |
0.0 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
358.9 |
359.9 |
| C2 |
N2 |
C7 |
C8 |
117.4 |
240.0 |
| C2 |
N2 |
C7 |
C9 |
238.2 |
120.0 |
| C8 |
N2 |
C7 |
C9 |
120.8 |
240.0 |
| C7 |
N2 |
C8 |
H81 |
300.6 |
180.0 |
| C7 |
N2 |
C8 |
H82 |
65.8 |
300.0 |
| C7 |
N2 |
C8 |
H83 |
175.2 |
60.0 |
| C7 |
N2 |
C9 |
C10 |
312.8 |
300.0 |
| C7 |
N2 |
C9 |
H91 |
78.0 |
180.0 |
| C7 |
N2 |
C9 |
H92 |
187.5 |
60.1 |
| H71 |
C7 |
N2 |
H72 |
234.7 |
239.9 |
| H71 |
C7 |
N2 |
H73 |
125.2 |
120.0 |
| H72 |
C7 |
N2 |
H73 |
250.6 |
240.1 |
| C2 |
N2 |
C8 |
C7 |
239.5 |
120.0 |
| C2 |
N2 |
C8 |
C9 |
120.7 |
240.0 |
| C7 |
N2 |
C8 |
C9 |
241.2 |
120.0 |
| C8 |
N2 |
C7 |
H71 |
62.6 |
300.0 |
| C8 |
N2 |
C7 |
H72 |
187.9 |
60.1 |
| C8 |
N2 |
C7 |
H73 |
297.3 |
180.0 |
| C8 |
N2 |
C9 |
C10 |
194.9 |
60.0 |
| C8 |
N2 |
C9 |
H91 |
320.1 |
300.0 |
| C8 |
N2 |
C9 |
H92 |
69.6 |
180.0 |
| H81 |
C8 |
N2 |
H82 |
234.8 |
240.0 |
| H81 |
C8 |
N2 |
H83 |
125.3 |
120.0 |
| H82 |
C8 |
N2 |
H83 |
250.6 |
240.0 |
| C2 |
N2 |
C9 |
C7 |
123.1 |
240.0 |
| C2 |
N2 |
C9 |
C8 |
241.0 |
120.0 |
| C7 |
N2 |
C9 |
C8 |
117.9 |
240.0 |
| C9 |
N2 |
C7 |
H71 |
301.8 |
60.0 |
| C9 |
N2 |
C7 |
H72 |
67.1 |
180.0 |
| C9 |
N2 |
C7 |
H73 |
176.6 |
300.0 |
| C9 |
N2 |
C8 |
H81 |
59.4 |
60.0 |
| C9 |
N2 |
C8 |
H82 |
184.6 |
180.0 |
| C9 |
N2 |
C8 |
H83 |
294.0 |
300.0 |
| C10 |
C9 |
N2 |
H91 |
234.8 |
120.0 |
| C10 |
C9 |
N2 |
H92 |
125.3 |
240.0 |
| N2 |
C9 |
C10 |
H101 |
180.0 |
300.0 |
| N2 |
C9 |
C10 |
H102 |
305.3 |
60.0 |
| N2 |
C9 |
C10 |
H103 |
54.7 |
180.0 |
| H91 |
C9 |
N2 |
H92 |
250.5 |
120.0 |
| H71 |
C7 |
N2 |
C8 |
62.6 |
300.0 |
| H71 |
C7 |
N2 |
C9 |
301.8 |
60.0 |
| N2 |
C7 |
H71 |
H72 |
125.3 |
120.1 |
| N2 |
C7 |
H71 |
H73 |
234.7 |
240.0 |
| H72 |
C7 |
H71 |
H73 |
109.4 |
119.9 |
| H72 |
C7 |
N2 |
C8 |
187.9 |
60.1 |
| H72 |
C7 |
N2 |
C9 |
67.1 |
180.0 |
| N2 |
C7 |
H72 |
H71 |
234.2 |
239.9 |
| N2 |
C7 |
H72 |
H73 |
117.1 |
119.9 |
| H71 |
C7 |
H72 |
H73 |
242.9 |
240.0 |
| H73 |
C7 |
N2 |
C8 |
297.3 |
180.0 |
| H73 |
C7 |
N2 |
C9 |
176.6 |
300.0 |
| N2 |
C7 |
H73 |
H71 |
125.8 |
120.0 |
| N2 |
C7 |
H73 |
H72 |
242.9 |
240.0 |
| H71 |
C7 |
H73 |
H72 |
117.1 |
120.0 |
| H81 |
C8 |
N2 |
C9 |
59.4 |
60.0 |
| N2 |
C8 |
H81 |
H82 |
125.3 |
120.0 |
| N2 |
C8 |
H81 |
H83 |
234.7 |
240.0 |
| H82 |
C8 |
H81 |
H83 |
109.4 |
120.0 |
| H82 |
C8 |
N2 |
C9 |
184.6 |
180.0 |
| N2 |
C8 |
H82 |
H81 |
237.9 |
240.0 |
| N2 |
C8 |
H82 |
H83 |
118.9 |
120.0 |
| H81 |
C8 |
H82 |
H83 |
241.0 |
240.0 |
| H83 |
C8 |
N2 |
C9 |
294.0 |
300.0 |
| N2 |
C8 |
H83 |
H81 |
122.1 |
120.0 |
| N2 |
C8 |
H83 |
H82 |
241.1 |
240.0 |
| H81 |
C8 |
H83 |
H82 |
118.9 |
120.0 |
| N2 |
C9 |
C10 |
H91 |
125.2 |
240.0 |
| N2 |
C9 |
C10 |
H92 |
234.8 |
120.0 |
| H91 |
C9 |
C10 |
H92 |
109.5 |
240.0 |
| H101 |
C10 |
C9 |
H102 |
234.7 |
239.9 |
| H101 |
C10 |
C9 |
H103 |
125.3 |
120.0 |
| H102 |
C10 |
C9 |
H103 |
250.6 |
240.0 |
| N2 |
C9 |
H91 |
C10 |
229.2 |
120.0 |
| N2 |
C9 |
H91 |
H92 |
114.6 |
240.0 |
| C10 |
C9 |
H91 |
H92 |
245.4 |
120.0 |
| H91 |
C9 |
C10 |
H101 |
54.8 |
60.0 |
| H91 |
C9 |
C10 |
H102 |
180.1 |
180.0 |
| H91 |
C9 |
C10 |
H103 |
289.5 |
300.0 |
| N2 |
C9 |
H92 |
C10 |
130.8 |
240.0 |
| N2 |
C9 |
H92 |
H91 |
245.4 |
120.0 |
| C10 |
C9 |
H92 |
H91 |
114.6 |
240.0 |
| H92 |
C9 |
C10 |
H101 |
305.2 |
180.0 |
| H92 |
C9 |
C10 |
H102 |
70.5 |
300.0 |
| H92 |
C9 |
C10 |
H103 |
179.9 |
60.0 |
| H101 |
C10 |
C9 |
H91 |
54.8 |
60.0 |
| H101 |
C10 |
C9 |
H92 |
305.2 |
180.0 |
| C9 |
C10 |
H101 |
H102 |
125.3 |
120.0 |
| C9 |
C10 |
H101 |
H103 |
234.7 |
240.0 |
| H102 |
C10 |
H101 |
H103 |
109.5 |
120.0 |
| H102 |
C10 |
C9 |
H91 |
180.1 |
180.0 |
| H102 |
C10 |
C9 |
H92 |
70.5 |
300.0 |
| C9 |
C10 |
H102 |
H101 |
229.2 |
240.0 |
| C9 |
C10 |
H102 |
H103 |
114.5 |
120.0 |
| H101 |
C10 |
H102 |
H103 |
245.4 |
240.0 |
| H103 |
C10 |
C9 |
H91 |
289.5 |
300.0 |
| H103 |
C10 |
C9 |
H92 |
179.9 |
60.0 |
| C9 |
C10 |
H103 |
H101 |
130.8 |
120.0 |
| C9 |
C10 |
H103 |
H102 |
245.4 |
240.0 |
| H101 |
C10 |
H103 |
H102 |
114.6 |
120.1 |