PDB Chemical Component EDD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for EDD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.388	1.389
C1	C6	1.399	1.389
C1	N21	1.356	1.398
C2	C3	1.392	1.381
C3	C4	1.378	1.382
C4	C5	1.383	1.382
C5	C6	1.387	1.381
C5	C13	1.503	1.508
C13	C14	1.526	1.507
C14	N15	1.333	1.348
C14	O19	1.216	1.212
N21	N23	1.407	1.402
N21	C26	1.349	1.375
N23	C24	1.331	1.364
C24	C25	1.376	1.349
C24	C32	1.523	1.508
C25	C26	1.380	1.412
C26	N40	1.370	1.329
C32	C34	1.542	1.530
C32	C36	1.529	1.530
C32	C38	1.529	1.530
N40	C42	1.335	1.338
C42	N43	1.368	1.348
C42	O48	1.238	1.218
N43	C44	1.369	1.399
C44	C50	1.406	1.388
C44	C54	1.399	1.390
C50	C51	1.404	1.382
C51	C52	1.391	1.382
C52	C53	1.381	1.384
C53	C54	1.393	1.383
C53	CL63	1.804	1.737
C54	CL61	1.790	1.736
C2	H2	1.080	1.081
C3	H3	1.080	1.080
C4	H4	1.080	1.080
C6	H6	1.080	1.080
C13	H13	1.100	1.091
C13	H13A	1.100	1.090
N15	HN15	1.000	0.971
N15	HN1A	1.000	0.970
N23	HN23	1.000	0.970
C25	H25	1.080	1.080
C34	H34	1.100	1.091
C34	H34A	1.101	1.090
C34	H34B	1.100	1.090
C36	H36	1.100	1.090
C36	H36A	1.100	1.090
C36	H36B	1.100	1.090
C38	H38	1.100	1.090
C38	H38A	1.100	1.089
C38	H38B	1.100	1.090
N43	HN43	0.999	0.970
C50	H50	1.080	1.080
C51	H51	1.080	1.080
C52	H52	1.081	1.080

Bond Angles for EDD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	114.3	119.8
C2	C1	N21	124.7	120.1
C1	C2	C3	124.0	119.9
C1	C2	H2	118.0	120.0
C6	C1	N21	121.0	120.0
C1	C6	C5	123.2	119.9
C1	C6	H6	118.4	120.1
C1	N21	N23	119.2	126.4
C1	N21	C26	129.7	126.4
C2	C3	C4	119.6	120.1
C3	C2	H2	118.0	120.1
C2	C3	H3	120.2	119.9
C3	C4	C5	118.7	120.1
C4	C3	H3	120.2	120.0
C3	C4	H4	120.7	119.9
C4	C5	C6	120.3	120.1
C4	C5	C13	119.1	119.9
C5	C4	H4	120.6	120.0
C6	C5	C13	120.6	120.0
C5	C6	H6	118.5	120.0
C5	C13	C14	111.5	109.5
C5	C13	H13	108.8	109.5
C5	C13	H13A	108.8	109.5
C13	C14	N15	117.6	120.0
C13	C14	O19	119.8	120.0
C14	C13	H13	108.8	109.5
C14	C13	H13A	108.8	109.5
N15	C14	O19	122.6	120.0
C14	N15	HN15	120.0	120.0
C14	N15	HN1A	120.0	120.0
N23	N21	C26	111.1	107.2
N21	N23	C24	103.1	108.3
N21	N23	HN23	111.7	125.8
N21	C26	C25	107.1	107.2
N21	C26	N40	121.6	126.4
N23	C24	C25	113.2	109.0
N23	C24	C32	122.8	125.5
C24	N23	HN23	111.7	125.9
C25	C24	C32	123.9	125.5
C24	C25	C26	105.5	108.2
C24	C25	H25	127.3	125.9
C24	C32	C34	107.3	109.5
C24	C32	C36	109.3	109.5
C24	C32	C38	110.7	109.5
C25	C26	N40	131.3	126.4
C26	C25	H25	127.2	125.9
C26	N40	C42	125.1	120.0
C34	C32	C36	110.1	109.5
C34	C32	C38	112.7	109.5
C32	C34	H34	109.5	109.5
C32	C34	H34A	109.5	109.5
C32	C34	H34B	109.5	109.4
C36	C32	C38	106.7	109.5
C32	C36	H36	109.5	109.5
C32	C36	H36A	109.5	109.5
C32	C36	H36B	109.4	109.5
C32	C38	H38	109.5	109.5
C32	C38	H38A	109.5	109.5
C32	C38	H38B	109.5	109.5
N40	C42	N43	114.4	120.0
N40	C42	O48	121.8	120.0
N43	C42	O48	123.7	120.0
C42	N43	C44	126.7	120.0
C42	N43	HN43	116.7	120.0
N43	C44	C50	123.9	120.1
N43	C44	C54	119.6	120.1
C44	N43	HN43	116.7	120.0
C50	C44	C54	116.5	119.8
C44	C50	C51	121.1	120.0
C44	C50	H50	119.4	120.0
C44	C54	C53	122.2	119.9
C44	C54	CL61	119.8	120.1
C50	C51	C52	120.9	120.1
C51	C50	H50	119.5	120.0
C50	C51	H51	119.5	120.0
C51	C52	C53	118.5	120.1
C52	C51	H51	119.5	119.9
C51	C52	H52	120.8	119.9
C52	C53	C54	120.7	120.0
C52	C53	CL63	122.0	120.0
C53	C52	H52	120.8	120.0
C54	C53	CL63	117.2	120.0
C53	C54	CL61	117.9	120.0
H13	C13	H13A	110.1	109.5
HN15	N15	HN1A	120.0	120.0
H34	C34	H34A	109.5	109.5
H34	C34	H34B	109.4	109.5
H34A	C34	H34B	109.5	109.5
H36	C36	H36A	109.5	109.4
H36	C36	H36B	109.5	109.5
H36A	C36	H36B	109.5	109.4
H38	C38	H38A	109.4	109.5
H38	C38	H38B	109.5	109.4
H38A	C38	H38B	109.5	109.5

Torsion Angles for EDD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	N21	181.7	180.3
C2	C1	C6	C5	358.1	360.0
C2	C1	C6	H6	178.1	180.0
C2	C1	N21	N23	223.0	360.0
C2	C1	N21	C26	41.3	179.7
C1	C2	C3	C4	358.7	360.0
C3	C2	C1	H2	180.0	180.0
C1	C2	C3	H3	178.7	180.0
C2	C1	C6	N21	178.3	179.7
C6	C1	C2	C3	1.9	0.0
C6	C1	C2	H2	181.9	180.0
C6	C1	N21	N23	41.2	179.7
C6	C1	N21	C26	219.4	359.4
C4	C5	C6	C1	1.2	0.0
C1	C6	C5	C13	179.7	180.0
C5	C6	C1	H6	180.0	180.0
C2	C1	N21	C6	181.8	180.3
N21	C1	C2	C3	180.2	179.7
N21	C1	C2	H2	0.2	359.7
N21	C1	C6	C5	179.8	180.3
N21	C1	C6	H6	359.8	0.3
N23	N21	C1	C26	181.7	180.3
C1	N21	N23	C24	179.2	180.0
C1	N21	N23	HN23	299.2	360.0
C1	N21	C26	C25	180.3	179.9
C1	N21	C26	N40	2.7	359.9
C3	C2	C1	C6	1.9	0.0
C3	C2	C1	N21	180.2	179.7
C1	C2	C3	H2	180.0	180.0
C2	C3	C4	C5	0.5	0.0
C4	C3	C2	H3	180.0	180.0
C2	C3	C4	H4	180.5	180.0
C4	C3	C2	H2	178.7	180.0
C2	C3	C4	H3	180.0	180.0
C3	C4	C5	C6	359.6	360.0
C3	C4	C5	C13	181.1	180.0
C5	C4	C3	H4	180.0	180.0
C1	C6	C5	C4	1.2	0.0
C5	C4	C3	H3	180.4	180.0
C3	C4	C5	H4	180.0	180.0
C6	C5	C4	C13	178.5	180.0
C4	C5	C6	H6	181.2	180.0
C4	C5	C13	C14	77.7	90.0
C4	C5	C13	H13	197.7	210.0
C4	C5	C13	H13A	317.7	330.0
C5	C6	C1	N21	179.8	180.3
C1	C6	C5	H6	180.0	180.0
C4	C5	C6	C13	181.5	180.0
C6	C5	C4	H4	179.6	180.0
C6	C5	C13	C14	259.2	270.0
C6	C5	C13	H13	19.2	30.0
C6	C5	C13	H13A	139.2	150.0
C4	C5	C13	C6	178.5	180.0
C13	C5	C4	H4	1.1	0.0
C13	C5	C6	H6	359.7	360.0
C5	C13	C14	N15	48.7	180.0
C5	C13	C14	O19	227.0	359.9
C14	C13	C5	H13	240.0	240.0
C14	C13	C5	H13A	120.0	120.1
H13	C13	C5	H13A	240.0	240.0
C5	C13	C14	H13	120.0	120.0
C5	C13	C14	H13A	240.0	240.0
N15	C14	C13	O19	181.7	180.0
C13	C14	N15	HN15	178.3	0.0
C13	C14	N15	HN1A	358.3	179.9
H13	C13	C14	H13A	120.0	120.0
C13	C14	N15	O19	178.3	180.0
N15	C14	C13	H13	288.8	60.0
N15	C14	C13	H13A	168.7	300.0
HN15	N15	C14	HN1A	180.0	180.1
C13	C14	O19	N15	181.8	180.0
O19	C14	C13	H13	107.1	240.0
O19	C14	C13	H13A	347.1	120.0
O19	C14	N15	HN15	0.0	180.1
O19	C14	N15	HN1A	180.0	360.0
C1	N21	N23	C26	178.6	179.8
N23	N21	C26	C25	358.7	359.6
N23	N21	C26	N40	181.1	179.7
N21	N23	C24	C25	0.2	0.1
N21	N23	C24	C32	178.4	180.0
C24	N23	N21	HN23	240.0	180.0
C1	N21	C26	N23	181.6	180.2
C26	N21	N23	C24	0.7	0.2
C26	N21	N23	HN23	120.7	180.2
C24	C25	C26	N21	1.3	0.4
C25	C26	N21	N40	177.6	180.0
N21	C26	C25	H25	181.4	180.1
N21	C26	N40	C42	215.1	180.0
C24	N23	N21	C26	0.7	0.2
N21	N23	C24	HN23	120.0	180.0
C25	C24	N23	C32	181.8	180.1
N23	C24	C25	C26	359.0	359.7
N23	C24	C25	H25	179.0	180.0
N23	C24	C32	C34	12.0	180.0
N23	C24	C32	C36	252.7	300.0
N23	C24	C32	C38	135.4	60.0
N21	C26	C25	C24	1.3	0.4
N23	C24	C25	C32	178.1	179.9
C25	C24	N23	HN23	240.2	180.0
C25	C24	C32	C34	189.9	360.0
C25	C24	C32	C36	70.6	120.0
C25	C24	C32	C38	313.3	240.0
C24	C25	C26	N40	178.6	180.4
C26	C25	C24	H25	180.0	179.7
N23	C24	C32	C25	182.0	180.1
C32	C24	N23	HN23	58.4	360.0
C32	C24	C25	C26	180.9	179.8
C32	C24	C25	H25	0.9	0.1
C34	C32	C24	C36	119.3	240.0
C34	C32	C24	C38	236.6	120.0
C24	C32	C34	H34	180.0	60.0
C24	C32	C34	H34A	300.0	180.0
C24	C32	C34	H34B	60.0	300.0
C36	C32	C24	C38	117.3	240.0
C24	C32	C36	H36	180.0	60.0
C24	C32	C36	H36A	300.0	180.0
C24	C32	C36	H36B	60.0	300.0
C24	C32	C38	H38	180.0	59.9
C24	C32	C38	H38A	300.0	180.0
C24	C32	C38	H38B	60.0	300.0
N21	C26	C25	N40	182.7	180.0
C26	C25	C24	C32	180.9	179.8
C24	C25	C26	H25	180.0	180.3
C25	C26	N40	C42	38.1	0.1
N21	C26	N40	C25	177.0	180.0
N40	C26	C25	H25	358.7	0.1
C26	N40	C42	N43	180.0	180.1
C26	N40	C42	O48	358.1	0.0
C24	C32	C34	C36	241.1	120.0
C24	C32	C34	C38	122.2	240.0
C36	C32	C34	C38	241.0	120.0
C34	C32	C36	H36	62.3	180.0
C34	C32	C36	H36A	182.4	300.0
C34	C32	C36	H36B	302.3	60.0
C34	C32	C38	H38	300.2	299.9
C34	C32	C38	H38A	60.2	60.0
C34	C32	C38	H38B	180.2	180.0
H34	C34	C32	H34A	240.0	240.0
H34	C34	C32	H34B	120.0	119.9
H34A	C34	C32	H34B	240.0	240.0
C24	C32	C36	C34	117.6	240.0
C24	C32	C36	C38	240.2	120.0
C34	C32	C36	C38	122.6	240.0
C36	C32	C34	H34	298.9	300.0
C36	C32	C34	H34A	58.9	60.0
C36	C32	C34	H34B	178.9	180.1
C36	C32	C38	H38	61.1	179.9
C36	C32	C38	H38A	181.1	300.0
C36	C32	C38	H38B	301.1	60.0
H36	C36	C32	H36A	240.0	240.0
H36	C36	C32	H36B	120.0	120.1
H36A	C36	C32	H36B	240.0	240.0
C24	C32	C38	C34	239.8	120.0
C24	C32	C38	C36	118.9	240.0
C34	C32	C38	C36	239.1	120.0
C38	C32	C34	H34	57.8	180.0
C38	C32	C34	H34A	177.8	300.0
C38	C32	C34	H34B	297.8	60.0
C38	C32	C36	H36	299.8	300.0
C38	C32	C36	H36A	59.8	60.0
C38	C32	C36	H36B	179.8	180.0
H38	C38	C32	H38A	240.0	239.9
H38	C38	C32	H38B	120.0	119.9
H38A	C38	C32	H38B	240.0	240.0
N43	C42	N40	O48	181.9	180.1
N40	C42	N43	C44	185.8	175.5
N40	C42	N43	HN43	5.8	355.5
N40	C42	N43	O48	178.0	179.9
C42	N43	C44	C50	35.7	34.7
C42	N43	C44	C54	214.7	214.4
C44	N43	C42	HN43	180.0	180.0
N40	C42	O48	N43	182.1	180.1
O48	C42	N43	C44	7.7	355.6
O48	C42	N43	HN43	187.7	175.6
C44	N43	C42	O48	7.7	355.6
C42	N43	C44	HN43	180.0	180.0
C50	C44	N43	C54	180.9	180.3
N43	C44	C50	C51	178.9	179.9
N43	C44	C50	H50	358.9	360.0
N43	C44	C54	C53	179.9	179.7
N43	C44	C54	CL61	2.0	0.0
N43	C44	C50	C54	179.1	179.7
C50	C44	N43	HN43	215.7	214.7
C50	C44	C54	C53	359.1	359.5
C50	C44	C54	CL61	181.2	179.8
C44	C50	C51	C52	1.3	0.1
C51	C50	C44	H50	180.0	180.0
C44	C50	C51	H51	181.3	180.0
N43	C44	C54	C50	180.9	180.3
C54	C44	N43	HN43	34.7	34.4
C54	C44	C50	C51	359.9	0.2
C54	C44	C50	H50	179.8	180.3
C52	C53	C54	C44	0.9	0.6
C44	C54	C53	CL63	180.2	180.3
C53	C54	C44	CL61	177.9	179.7
C51	C50	C44	C54	359.9	0.2
C44	C50	C51	H50	180.0	180.0
C50	C51	C52	C53	358.7	360.0
C52	C51	C50	H51	180.0	180.1
C50	C51	C52	H52	178.7	179.9
C52	C51	C50	H50	181.3	180.0
C50	C51	C52	H51	180.0	179.9
C51	C52	C53	C54	0.2	359.7
C51	C52	C53	CL63	180.9	179.9
C53	C52	C51	H52	180.0	180.1
C44	C54	C53	C52	0.9	0.6
C53	C52	C51	H51	178.7	180.1
C51	C52	C53	H52	180.0	179.9
C54	C53	C52	CL63	179.3	179.7
C52	C53	C54	CL61	178.9	180.3
C44	C54	C53	CL61	182.0	180.3
C52	C53	C54	CL63	180.7	180.3
C54	C53	C52	H52	180.2	179.8
C52	C53	CL63	C54	179.3	179.7
CL63	C53	C52	H52	0.9	0.0
CL63	C53	C54	CL61	358.2	0.0
C44	C54	CL61	C53	178.0	179.7
CL61	C54	C53	CL63	358.2	0.0
H2	C2	C1	C6	181.9	180.0
H2	C2	C1	N21	0.2	359.7
C1	C2	H2	C3	180.0	180.0
H2	C2	C3	C4	178.7	180.0
H2	C2	C3	H3	358.8	360.0
C2	C3	H3	C4	180.0	180.0
H3	C3	C2	H2	358.8	360.0
H3	C3	C4	C5	180.4	180.0
H3	C3	C4	H4	0.4	360.0
C3	C4	H4	C5	180.0	180.0
H4	C4	C3	H3	0.4	360.0
H4	C4	C5	C6	179.6	180.0
H4	C4	C5	C13	1.1	0.0
H6	C6	C1	N21	359.8	0.3
C1	C6	H6	C5	180.0	180.0
H6	C6	C5	C13	359.7	360.0
C5	C13	H13	C14	238.4	240.0
C5	C13	H13	H13A	119.2	120.0
H13	C13	C14	N15	288.8	60.0
H13	C13	C14	O19	107.1	240.0
C14	C13	H13	H13A	240.8	239.9
C5	C13	H13A	C14	121.7	120.0
C5	C13	H13A	H13	240.8	240.0
H13A	C13	C14	N15	168.7	300.0
H13A	C13	C14	O19	347.1	120.0
C14	C13	H13A	H13	119.2	120.0
HN15	N15	C14	O19	0.0	180.1
C14	N15	HN15	HN1A	180.0	179.9
HN1A	N15	C14	O19	180.0	360.0
C14	N15	HN1A	HN15	180.0	180.1
HN23	N23	N21	C26	120.7	180.2
N21	N23	HN23	C24	245.2	180.0
HN23	N23	C24	C25	240.2	180.0
HN23	N23	C24	C32	58.4	360.0
H25	C25	C24	C32	0.9	0.1
C24	C25	H25	C26	180.0	179.7
H25	C25	C26	N40	358.7	0.1
H34	C34	C32	C36	298.9	300.0
H34	C34	C32	C38	57.8	180.0
C32	C34	H34	H34A	120.0	120.0
C32	C34	H34	H34B	240.0	240.1
H34A	C34	H34	H34B	120.0	120.1
H34A	C34	C32	C36	58.9	60.0
H34A	C34	C32	C38	177.8	300.0
C32	C34	H34A	H34	240.0	240.0
C32	C34	H34A	H34B	120.0	120.0
H34	C34	H34A	H34B	240.0	240.0
H34B	C34	C32	C36	178.9	180.1
H34B	C34	C32	C38	297.8	60.0
C32	C34	H34B	H34	120.0	119.9
C32	C34	H34B	H34A	240.0	240.0
H34	C34	H34B	H34A	120.0	120.1
H36	C36	C32	C38	299.8	300.0
C32	C36	H36	H36A	120.0	120.0
C32	C36	H36	H36B	240.0	240.0
H36A	C36	H36	H36B	120.0	120.0
H36A	C36	C32	C38	59.8	60.0
C32	C36	H36A	H36	240.0	240.0
C32	C36	H36A	H36B	120.0	120.0
H36	C36	H36A	H36B	240.0	240.0
H36B	C36	C32	C38	179.8	180.0
C32	C36	H36B	H36	120.0	120.1
C32	C36	H36B	H36A	240.0	240.0
H36	C36	H36B	H36A	120.0	120.0
C32	C38	H38	H38A	120.0	120.1
C32	C38	H38	H38B	240.0	240.0
H38A	C38	H38	H38B	119.9	120.0
C32	C38	H38A	H38	240.0	240.0
C32	C38	H38A	H38B	120.0	120.0
H38	C38	H38A	H38B	240.0	240.1
C32	C38	H38B	H38	120.1	119.9
C32	C38	H38B	H38A	240.0	239.9
H38	C38	H38B	H38A	119.9	120.0
HN43	N43	C42	O48	187.7	175.6
C42	N43	HN43	C44	180.0	180.0
HN43	N43	C44	C50	215.7	214.7
HN43	N43	C44	C54	34.7	34.4
H50	C50	C44	C54	179.8	180.3
C44	C50	H50	C51	180.0	180.0
H50	C50	C51	C52	181.3	180.0
H50	C50	C51	H51	1.3	359.9
C50	C51	H51	C52	180.0	180.1
H51	C51	C50	H50	1.3	359.9
H51	C51	C52	C53	178.7	180.1
H51	C51	C52	H52	358.7	0.0
C51	C52	H52	C53	180.0	180.1
H52	C52	C51	H51	358.7	0.0
H52	C52	C53	C54	180.2	179.8
H52	C52	C53	CL63	0.9	0.0