PDB Chemical Component EDC

Ideal Model

Chemical Description

Name N3,N4-ETHENO-2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
Synonyms 6-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)imidazo[1,2-c]pyrimidin-5(6H)-one
Formula C11 H14 N3 O7 P
Formal charge 0
Molecular weight 331.219 g/mol
Component type DNA LINKING

Chemical features

Atom count 36
Chiral atom count 3
Chiral atoms C1' C3' C4'
Observed leaving atoms OP3 HOP3 HO3'
Bond count 38
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) 6-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)imidazo[1,2-c]pyrimidin-5(6H)-one
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-oxidanyl-5-(5-oxidanylideneimidazo[1,2-c]pyrimidin-6-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=Cc3nccn3C2=O
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=Cc3nccn3C2=O
Stereo SMILES (OpenEye) c1cn2c(n1)C=CN(C2=O)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O
InChI descriptor InChI=1S/C11H14N3O7P/c15-7-5-10(21-8(7)6-20-22(17,18)19)14-3-1-9-12-2-4-13(9)11(14)16/h1-4,7-8,10,15H,5-6H2,(H2,17,18,19)/t7-,8+,10+/m0/s1
InChIKey descriptor GFTHJCBXWZWVBW-QXFUBDJGSA-N

Status Information

Last modified 2012-01-09
Created 1999-07-08
Release status REL
Model PDB code 3UBY
Processing site RCSB