PDB Chemical Component EDA

Ideal Model

Chemical Description

Name 3-[2-DEOXY-RIBOFURANOSYL]-3H-1,3,4,5A,8-PENTAAZA-AS-INDACENE-5'-MONOPHOSPHATE
Formula C12 H14 N5 O6 P
Formal charge 0
Molecular weight 355.243 g/mol
Component type DNA LINKING
Nonstandard Parent Id DA

Chemical features

Atom count 38
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms OP3 HO3'
Bond count 41
Aromatic bond count 14

Chemical Identifiers

Systematic name (ACDLabs) 3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-3H-imidazo[2,1-i]purine
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-imidazo[2,1-f]purin-3-yl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3c4nccn4cnc23
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2cnc3c4nccn4cnc23
Stereo SMILES (OpenEye) c1cn2cnc3c(c2n1)ncn3[C@H]4C[C@@H]([C@H](O4)COP(=O)(O)O)O
InChI descriptor InChI=1S/C12H14N5O6P/c18-7-3-9(23-8(7)4-22-24(19,20)21)17-6-14-10-11-13-1-2-16(11)5-15-12(10)17/h1-2,5-9,18H,3-4H2,(H2,19,20,21)/t7-,8+,9+/m0/s1
InChIKey descriptor CACCSKNYAUKFAV-DJLDLDEBSA-N

Status Information

Last modified 2011-06-04
Created 2000-04-28
Release status REL
Model PDB code 1F4R
Processing site RCSB