PDB Chemical Component ED8
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ED8
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N02 |
C01 |
1.451 |
1.469 |
| C01 |
H01 |
1.100 |
1.090 |
| C01 |
H01A |
1.100 |
1.091 |
| C01 |
H01B |
1.100 |
1.090 |
| C37 |
N02 |
1.462 |
1.469 |
| N02 |
C03 |
1.474 |
1.468 |
| C04 |
C03 |
1.551 |
1.530 |
| C03 |
H03 |
1.100 |
1.090 |
| C03 |
H03A |
1.100 |
1.090 |
| C05 |
C04 |
1.535 |
1.531 |
| C04 |
H04 |
1.100 |
1.090 |
| C04 |
H04A |
1.100 |
1.090 |
| O06 |
C05 |
1.411 |
1.428 |
| C05 |
C36 |
1.539 |
1.532 |
| C05 |
H05 |
1.100 |
1.090 |
| O06 |
C07 |
1.401 |
1.359 |
| C35 |
C07 |
1.452 |
1.383 |
| C07 |
C08 |
1.399 |
1.392 |
| C08 |
C09 |
1.475 |
1.365 |
| C08 |
H08 |
1.080 |
1.080 |
| C10 |
C09 |
1.446 |
1.397 |
| C09 |
H09 |
1.080 |
1.080 |
| C34 |
C10 |
1.392 |
1.405 |
| N11 |
C10 |
1.403 |
1.359 |
| C12 |
N11 |
1.397 |
1.300 |
| N13 |
C12 |
1.399 |
1.365 |
| C12 |
H12 |
1.080 |
1.080 |
| C14 |
N13 |
1.362 |
1.392 |
| N13 |
C34 |
1.391 |
1.383 |
| C15 |
C14 |
1.587 |
1.348 |
| S33 |
C14 |
1.668 |
1.758 |
| C16 |
C15 |
1.769 |
1.375 |
| C15 |
H15 |
1.080 |
1.079 |
| O17 |
C16 |
1.407 |
1.358 |
| C16 |
C29 |
1.546 |
1.373 |
| O17 |
C18 |
1.407 |
1.429 |
| C18 |
C19 |
1.527 |
1.507 |
| C18 |
H18 |
1.100 |
1.090 |
| C18 |
H18A |
1.100 |
1.091 |
| C19 |
C20 |
1.423 |
1.382 |
| C19 |
C24 |
1.518 |
1.383 |
| C20 |
C21 |
1.451 |
1.383 |
| C20 |
H20 |
1.080 |
1.080 |
| C21 |
C22 |
1.508 |
1.382 |
| C21 |
H21 |
1.080 |
1.079 |
| C23 |
C22 |
1.408 |
1.382 |
| C22 |
H22 |
1.080 |
1.080 |
| C24 |
C23 |
1.463 |
1.382 |
| C23 |
H23 |
1.080 |
1.080 |
| C25 |
C24 |
1.501 |
1.507 |
| F27 |
C25 |
1.333 |
1.398 |
| C25 |
F28 |
1.336 |
1.399 |
| C25 |
F26 |
1.338 |
1.399 |
| C30 |
C29 |
1.509 |
1.414 |
| C29 |
S33 |
1.780 |
1.758 |
| N31 |
C30 |
1.432 |
1.348 |
| C30 |
O32 |
1.223 |
1.218 |
| N31 |
HN31 |
1.000 |
0.969 |
| N31 |
HN3A |
1.000 |
0.970 |
| C35 |
C34 |
1.458 |
1.388 |
| C35 |
H35 |
1.080 |
1.080 |
| C37 |
C36 |
1.555 |
1.530 |
| C36 |
H36 |
1.100 |
1.090 |
| C36 |
H36A |
1.100 |
1.090 |
| C37 |
H37 |
1.100 |
1.091 |
| C37 |
H37A |
1.100 |
1.090 |
Bond Angles for ED8
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N02 |
C01 |
H01 |
109.5 |
109.4 |
| N02 |
C01 |
H01A |
109.4 |
109.5 |
| N02 |
C01 |
H01B |
109.5 |
109.5 |
| H01 |
C01 |
H01A |
109.4 |
109.4 |
| H01 |
C01 |
H01B |
109.4 |
109.5 |
| H01A |
C01 |
H01B |
109.5 |
109.4 |
| N02 |
C03 |
H03 |
107.6 |
109.5 |
| N02 |
C03 |
H03A |
107.6 |
109.5 |
| C04 |
C03 |
H03 |
107.6 |
109.5 |
| C04 |
C03 |
H03A |
107.6 |
109.4 |
| H03 |
C03 |
H03A |
111.3 |
109.5 |
| C05 |
C04 |
H04 |
108.5 |
109.5 |
| C05 |
C04 |
H04A |
108.5 |
109.5 |
| H04 |
C04 |
H04A |
110.4 |
109.4 |
| O06 |
C05 |
C36 |
120.6 |
109.5 |
| O06 |
C05 |
H05 |
90.6 |
109.6 |
| C36 |
C05 |
H05 |
102.6 |
109.5 |
| C05 |
C36 |
H36 |
109.0 |
109.5 |
| C05 |
C36 |
H36A |
109.1 |
109.5 |
| O06 |
C07 |
C08 |
123.2 |
119.9 |
| C07 |
C08 |
C09 |
119.1 |
120.6 |
| C07 |
C08 |
H08 |
120.4 |
119.7 |
| C09 |
C08 |
H08 |
120.5 |
119.7 |
| C08 |
C09 |
H09 |
120.0 |
120.0 |
| C10 |
C09 |
H09 |
119.9 |
120.0 |
| N13 |
C12 |
H12 |
126.6 |
125.0 |
| C14 |
N13 |
C34 |
121.5 |
126.4 |
| C16 |
C15 |
H15 |
126.1 |
122.5 |
| O17 |
C16 |
C29 |
132.4 |
122.9 |
| C16 |
C29 |
S33 |
109.8 |
109.4 |
| O17 |
C18 |
C19 |
119.5 |
109.5 |
| O17 |
C18 |
H18 |
106.2 |
109.5 |
| O17 |
C18 |
H18A |
106.3 |
109.5 |
| C19 |
C18 |
H18 |
106.3 |
109.5 |
| C19 |
C18 |
H18A |
106.3 |
109.4 |
| C18 |
C19 |
C20 |
117.9 |
120.0 |
| C18 |
C19 |
C24 |
123.1 |
120.0 |
| H18 |
C18 |
H18A |
112.5 |
109.5 |
| C20 |
C19 |
C24 |
119.0 |
120.0 |
| C19 |
C20 |
C21 |
121.9 |
120.0 |
| C19 |
C20 |
H20 |
119.0 |
120.0 |
| C19 |
C24 |
C23 |
118.9 |
120.0 |
| C21 |
C20 |
H20 |
119.1 |
120.0 |
| C20 |
C21 |
C22 |
118.8 |
120.0 |
| C20 |
C21 |
H21 |
120.6 |
120.0 |
| C22 |
C21 |
H21 |
120.6 |
120.1 |
| C21 |
C22 |
H22 |
119.9 |
120.0 |
| C23 |
C22 |
H22 |
119.9 |
120.0 |
| C24 |
C23 |
H23 |
119.4 |
120.0 |
| F27 |
C25 |
F28 |
110.0 |
109.5 |
| F26 |
C25 |
F28 |
108.0 |
109.5 |
| C30 |
C29 |
S33 |
122.8 |
125.3 |
| N31 |
C30 |
O32 |
120.0 |
120.0 |
| HN31 |
N31 |
HN3A |
120.0 |
120.0 |
| C37 |
C36 |
H36 |
109.1 |
109.5 |
| C37 |
C36 |
H36A |
109.0 |
109.5 |
| H36 |
C36 |
H36A |
109.9 |
109.5 |
| H37 |
C37 |
H37A |
110.5 |
109.4 |
Torsion Angles for ED8
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H01 |
C01 |
N02 |
H01A |
240.0 |
240.1 |
| H01 |
C01 |
N02 |
H01B |
120.0 |
120.1 |
| H01A |
C01 |
N02 |
H01B |
240.0 |
240.0 |
| N02 |
C01 |
H01 |
H01A |
120.0 |
120.0 |
| N02 |
C01 |
H01 |
H01B |
240.0 |
239.9 |
| H01A |
C01 |
H01 |
H01B |
120.0 |
120.0 |
| N02 |
C01 |
H01A |
H01 |
240.0 |
240.1 |
| N02 |
C01 |
H01A |
H01B |
120.0 |
120.0 |
| H01 |
C01 |
H01A |
H01B |
240.0 |
240.0 |
| N02 |
C01 |
H01B |
H01 |
120.0 |
120.0 |
| N02 |
C01 |
H01B |
H01A |
240.0 |
240.0 |
| H01 |
C01 |
H01B |
H01A |
120.0 |
120.0 |
| C37 |
N02 |
C01 |
H01 |
180.0 |
184.3 |
| C37 |
N02 |
C01 |
H01A |
300.0 |
304.2 |
| C37 |
N02 |
C01 |
H01B |
60.0 |
64.2 |
| C37 |
N02 |
C03 |
H03 |
153.3 |
181.7 |
| C37 |
N02 |
C03 |
H03A |
273.3 |
301.8 |
| C03 |
N02 |
C01 |
H01 |
49.3 |
60.1 |
| C03 |
N02 |
C01 |
H01A |
169.3 |
180.0 |
| C03 |
N02 |
C01 |
H01B |
289.3 |
300.0 |
| C04 |
C03 |
N02 |
H03 |
240.0 |
240.0 |
| C04 |
C03 |
N02 |
H03A |
120.0 |
119.9 |
| H03 |
C03 |
N02 |
H03A |
240.0 |
240.0 |
| N02 |
C03 |
C04 |
H03 |
120.0 |
120.0 |
| N02 |
C03 |
C04 |
H03A |
240.0 |
239.9 |
| H03 |
C03 |
C04 |
H03A |
120.0 |
119.9 |
| N02 |
C03 |
H03 |
H03A |
117.6 |
120.1 |
| C04 |
C03 |
H03 |
H03A |
242.4 |
240.1 |
| N02 |
C03 |
H03A |
H03 |
242.4 |
240.0 |
| C04 |
C03 |
H03A |
H03 |
117.6 |
119.9 |
| C05 |
C04 |
C03 |
H03 |
187.6 |
180.8 |
| C05 |
C04 |
C03 |
H03A |
67.6 |
60.9 |
| H04 |
C04 |
C05 |
H04A |
120.0 |
120.0 |
| H04 |
C04 |
C03 |
H03 |
307.6 |
300.7 |
| H04 |
C04 |
C03 |
H03A |
187.6 |
180.8 |
| C05 |
C04 |
H04 |
H04A |
241.2 |
239.9 |
| H04A |
C04 |
C03 |
H03 |
67.6 |
60.8 |
| H04A |
C04 |
C03 |
H03A |
307.6 |
300.9 |
| C05 |
C04 |
H04A |
H04 |
118.8 |
120.0 |
| O06 |
C05 |
C04 |
H04 |
41.6 |
57.6 |
| O06 |
C05 |
C04 |
H04A |
281.7 |
297.6 |
| C36 |
C05 |
O06 |
H05 |
254.9 |
239.9 |
| O06 |
C05 |
C36 |
H36 |
11.8 |
302.4 |
| O06 |
C05 |
C36 |
H36A |
131.8 |
62.4 |
| C36 |
C05 |
C04 |
H04 |
252.3 |
297.7 |
| C36 |
C05 |
C04 |
H04A |
132.3 |
177.6 |
| O06 |
C05 |
C36 |
H05 |
98.4 |
120.1 |
| C37 |
C36 |
C05 |
H36 |
240.0 |
240.0 |
| C37 |
C36 |
C05 |
H36A |
120.0 |
120.0 |
| H36 |
C36 |
C05 |
H36A |
240.0 |
239.9 |
| H05 |
C05 |
C04 |
H04 |
141.2 |
177.8 |
| H05 |
C05 |
C04 |
H04A |
21.2 |
57.8 |
| O06 |
C05 |
H05 |
C36 |
238.4 |
239.9 |
| H05 |
C05 |
C36 |
H36 |
273.4 |
182.2 |
| H05 |
C05 |
C36 |
H36A |
33.4 |
302.3 |
| C07 |
O06 |
C05 |
C36 |
267.0 |
275.1 |
| C07 |
O06 |
C05 |
H05 |
12.0 |
35.2 |
| O06 |
C07 |
C08 |
C09 |
177.5 |
180.0 |
| O06 |
C07 |
C08 |
H08 |
357.5 |
360.0 |
| C35 |
C07 |
C08 |
H08 |
180.3 |
180.2 |
| C09 |
C08 |
C07 |
H08 |
180.0 |
180.1 |
| C07 |
C08 |
C09 |
H09 |
180.3 |
180.0 |
| C07 |
C08 |
C09 |
H08 |
180.0 |
179.9 |
| C10 |
C09 |
C08 |
H09 |
180.0 |
180.0 |
| C07 |
C08 |
H08 |
C09 |
180.0 |
180.1 |
| H08 |
C08 |
C09 |
H09 |
0.3 |
0.0 |
| C10 |
C09 |
C08 |
H08 |
180.3 |
180.0 |
| C08 |
C09 |
C10 |
H09 |
180.0 |
180.0 |
| H09 |
C09 |
C08 |
H08 |
0.3 |
0.0 |
| C34 |
C10 |
C09 |
H09 |
179.4 |
180.0 |
| N11 |
C10 |
C09 |
H09 |
359.6 |
360.0 |
| C14 |
N13 |
C12 |
H12 |
353.4 |
0.1 |
| C34 |
N13 |
C12 |
H12 |
185.2 |
180.1 |
| C15 |
C14 |
N13 |
C34 |
326.7 |
130.0 |
| S33 |
C14 |
N13 |
C34 |
141.9 |
309.7 |
| O17 |
C16 |
C15 |
H15 |
2.6 |
0.0 |
| O17 |
C16 |
C29 |
S33 |
175.9 |
179.7 |
| C29 |
C16 |
C15 |
H15 |
179.2 |
180.0 |
| C30 |
C29 |
C16 |
S33 |
176.5 |
180.3 |
| C18 |
O17 |
C16 |
C29 |
188.1 |
180.0 |
| C19 |
C18 |
O17 |
H18 |
240.0 |
240.0 |
| C19 |
C18 |
O17 |
H18A |
120.0 |
120.0 |
| O17 |
C18 |
C19 |
C20 |
23.9 |
0.0 |
| O17 |
C18 |
C19 |
C24 |
204.0 |
179.7 |
| H18 |
C18 |
O17 |
H18A |
240.0 |
240.0 |
| O17 |
C18 |
C19 |
H18 |
120.0 |
120.0 |
| O17 |
C18 |
C19 |
H18A |
240.0 |
240.0 |
| H18 |
C18 |
C19 |
H18A |
120.0 |
120.0 |
| C20 |
C19 |
C18 |
C24 |
180.0 |
180.3 |
| C18 |
C19 |
C20 |
C21 |
180.7 |
180.0 |
| C18 |
C19 |
C20 |
H20 |
0.7 |
359.9 |
| C18 |
C19 |
C24 |
C23 |
179.2 |
179.8 |
| O17 |
C18 |
H18 |
C19 |
231.7 |
240.0 |
| O17 |
C18 |
H18 |
H18A |
115.9 |
120.0 |
| C19 |
C18 |
H18 |
H18A |
244.1 |
240.0 |
| H18 |
C18 |
C19 |
C20 |
264.0 |
240.1 |
| H18 |
C18 |
C19 |
C24 |
84.0 |
59.7 |
| O17 |
C18 |
H18A |
C19 |
128.3 |
120.0 |
| O17 |
C18 |
H18A |
H18 |
244.2 |
240.0 |
| C19 |
C18 |
H18A |
H18 |
115.9 |
120.0 |
| H18A |
C18 |
C19 |
C20 |
144.0 |
120.0 |
| H18A |
C18 |
C19 |
C24 |
324.0 |
299.7 |
| C20 |
C19 |
C18 |
H18 |
264.0 |
240.1 |
| C20 |
C19 |
C18 |
H18A |
144.0 |
120.0 |
| C18 |
C19 |
C20 |
C24 |
180.0 |
179.7 |
| C20 |
C19 |
C24 |
C23 |
359.2 |
359.4 |
| C21 |
C20 |
C19 |
H20 |
180.0 |
180.1 |
| C19 |
C20 |
C21 |
C22 |
359.6 |
359.9 |
| C19 |
C20 |
C21 |
H21 |
179.7 |
179.9 |
| C24 |
C19 |
C18 |
H18 |
84.0 |
59.7 |
| C24 |
C19 |
C18 |
H18A |
324.0 |
299.7 |
| C18 |
C19 |
C24 |
C20 |
180.0 |
180.3 |
| C24 |
C19 |
C20 |
C21 |
0.7 |
0.3 |
| C24 |
C19 |
C20 |
H20 |
180.7 |
180.3 |
| C19 |
C24 |
C23 |
H23 |
180.6 |
180.3 |
| C21 |
C20 |
C19 |
C24 |
0.7 |
0.3 |
| C19 |
C20 |
C21 |
H20 |
180.0 |
179.9 |
| C22 |
C21 |
C20 |
H21 |
180.0 |
180.0 |
| C20 |
C21 |
C22 |
H22 |
180.1 |
180.0 |
| H20 |
C20 |
C19 |
C24 |
180.7 |
180.3 |
| C19 |
C20 |
H20 |
C21 |
180.0 |
180.1 |
| H20 |
C20 |
C21 |
C22 |
179.6 |
180.0 |
| H20 |
C20 |
C21 |
H21 |
359.7 |
0.0 |
| C22 |
C21 |
C20 |
H20 |
179.6 |
180.0 |
| C20 |
C21 |
C22 |
H21 |
180.0 |
180.0 |
| C23 |
C22 |
C21 |
H22 |
180.0 |
180.0 |
| H21 |
C21 |
C20 |
H20 |
359.7 |
0.0 |
| C20 |
C21 |
H21 |
C22 |
180.0 |
180.0 |
| H21 |
C21 |
C22 |
H22 |
0.1 |
0.0 |
| C19 |
C24 |
C23 |
C22 |
0.6 |
0.5 |
| C23 |
C22 |
C21 |
H21 |
180.1 |
180.0 |
| C21 |
C22 |
C23 |
H22 |
180.0 |
180.0 |
| H22 |
C22 |
C21 |
H21 |
0.1 |
0.0 |
| C24 |
C23 |
C22 |
H22 |
179.7 |
179.8 |
| H23 |
C23 |
C22 |
H22 |
359.7 |
360.0 |
| C25 |
C24 |
C23 |
H23 |
0.1 |
0.0 |
| F26 |
C25 |
F27 |
F28 |
242.6 |
240.0 |
| F27 |
C25 |
F26 |
F28 |
118.7 |
120.0 |
| C16 |
C29 |
C30 |
S33 |
183.9 |
179.7 |
| N31 |
C30 |
C29 |
S33 |
167.9 |
0.3 |
| O32 |
C30 |
C29 |
S33 |
4.0 |
180.3 |
| HN31 |
N31 |
C30 |
O32 |
0.0 |
180.0 |
| HN3A |
N31 |
C30 |
O32 |
180.0 |
0.0 |
| C37 |
C36 |
C05 |
H05 |
153.4 |
62.3 |
| C05 |
C36 |
C37 |
H36 |
120.0 |
120.0 |
| C05 |
C36 |
C37 |
H36A |
240.0 |
240.1 |
| H36 |
C36 |
C37 |
H36A |
120.0 |
120.1 |
| H36 |
C36 |
C05 |
H05 |
273.4 |
182.2 |
| C05 |
C36 |
H36 |
H36A |
119.5 |
120.0 |
| C37 |
C36 |
H36 |
H36A |
240.5 |
239.9 |
| H36A |
C36 |
C05 |
H05 |
33.4 |
302.3 |
| C05 |
C36 |
H36A |
H36 |
240.5 |
239.9 |
| C37 |
C36 |
H36A |
H36 |
119.5 |
120.1 |
| H37 |
C37 |
C36 |
H36 |
58.5 |
179.2 |
| H37 |
C37 |
C36 |
H36A |
298.5 |
59.1 |
| H37A |
C37 |
C36 |
H36 |
298.5 |
59.2 |
| H37A |
C37 |
C36 |
H36A |
178.5 |
299.1 |