PDB Chemical Component ECV
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ECV
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O4 |
C3 |
1.223 |
1.213 |
| C3 |
C5 |
1.502 |
1.507 |
| C3 |
N2 |
1.352 |
1.348 |
| C1 |
N2 |
1.427 |
1.464 |
| C5 |
C6 |
1.522 |
1.530 |
| C6 |
C7 |
1.510 |
1.535 |
| C6 |
N16 |
1.464 |
1.473 |
| O8 |
C7 |
1.430 |
1.429 |
| O8 |
C9 |
1.404 |
1.360 |
| C9 |
C10 |
1.385 |
1.386 |
| C9 |
C15 |
1.393 |
1.398 |
| N16 |
C15 |
1.422 |
1.406 |
| N16 |
C17 |
1.406 |
1.348 |
| C10 |
C11 |
1.378 |
1.384 |
| C15 |
C14 |
1.388 |
1.382 |
| O18 |
C17 |
1.223 |
1.217 |
| C11 |
F12 |
1.338 |
1.351 |
| C11 |
C13 |
1.381 |
1.384 |
| C14 |
C13 |
1.380 |
1.383 |
| C17 |
C19 |
1.488 |
1.476 |
| C19 |
C29 |
1.383 |
1.397 |
| C19 |
C20 |
1.387 |
1.398 |
| C29 |
C28 |
1.378 |
1.381 |
| C20 |
C21 |
1.391 |
1.379 |
| C28 |
N27 |
1.399 |
1.402 |
| C28 |
C22 |
1.379 |
1.396 |
| C21 |
C22 |
1.388 |
1.386 |
| N27 |
C25 |
1.372 |
1.351 |
| C22 |
O23 |
1.389 |
1.359 |
| C25 |
O26 |
1.228 |
1.213 |
| C25 |
C24 |
1.500 |
1.508 |
| O23 |
C24 |
1.436 |
1.431 |
| C1 |
H1 |
1.100 |
1.091 |
| C1 |
H2 |
1.100 |
1.090 |
| C1 |
H3 |
1.100 |
1.090 |
| C7 |
H4 |
1.100 |
1.091 |
| C7 |
H5 |
1.100 |
1.090 |
| C10 |
H6 |
1.080 |
1.081 |
| C13 |
H7 |
1.080 |
1.080 |
| C14 |
H8 |
1.080 |
1.080 |
| C20 |
H9 |
1.080 |
1.080 |
| C21 |
H10 |
1.080 |
1.081 |
| C24 |
H11 |
1.100 |
1.090 |
| C24 |
H12 |
1.100 |
1.090 |
| N2 |
H13 |
1.000 |
0.971 |
| C5 |
H14 |
1.100 |
1.090 |
| C5 |
H15 |
1.100 |
1.090 |
| C6 |
H16 |
1.100 |
1.090 |
| N27 |
H17 |
1.000 |
0.970 |
| C29 |
H18 |
1.080 |
1.080 |
Bond Angles for ECV
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O4 |
C3 |
C5 |
121.6 |
120.0 |
| O4 |
C3 |
N2 |
124.3 |
120.0 |
| N2 |
C3 |
C5 |
113.9 |
120.0 |
| C3 |
C5 |
C6 |
117.1 |
109.5 |
| C3 |
C5 |
H14 |
107.5 |
109.5 |
| C3 |
C5 |
H15 |
107.5 |
109.5 |
| C1 |
N2 |
C3 |
121.2 |
120.0 |
| C3 |
N2 |
H13 |
119.4 |
120.0 |
| N2 |
C1 |
H1 |
109.5 |
109.5 |
| N2 |
C1 |
H2 |
109.4 |
109.5 |
| N2 |
C1 |
H3 |
109.5 |
109.5 |
| C1 |
N2 |
H13 |
119.4 |
120.0 |
| C5 |
C6 |
N16 |
117.0 |
109.9 |
| C6 |
C5 |
H14 |
107.5 |
109.5 |
| C6 |
C5 |
H15 |
107.6 |
109.4 |
| C5 |
C6 |
H16 |
107.7 |
109.8 |
| C6 |
C7 |
H4 |
108.7 |
109.6 |
| C6 |
C7 |
H5 |
108.7 |
109.6 |
| C6 |
N16 |
C17 |
116.2 |
121.1 |
| N16 |
C6 |
H16 |
108.4 |
109.9 |
| O8 |
C7 |
H4 |
108.7 |
109.6 |
| O8 |
C7 |
H5 |
108.7 |
109.6 |
| C10 |
C9 |
C15 |
121.3 |
119.6 |
| C9 |
C10 |
C11 |
117.9 |
120.0 |
| C9 |
C10 |
H6 |
121.1 |
120.0 |
| C9 |
C15 |
C14 |
119.7 |
120.0 |
| C10 |
C11 |
F12 |
118.1 |
119.8 |
| C10 |
C11 |
C13 |
121.5 |
120.3 |
| C11 |
C10 |
H6 |
121.0 |
120.0 |
| C15 |
C14 |
H8 |
120.4 |
119.8 |
| C13 |
C11 |
F12 |
120.3 |
119.9 |
| C11 |
C13 |
H7 |
119.8 |
120.0 |
| C14 |
C13 |
H7 |
119.8 |
120.0 |
| C17 |
C19 |
C29 |
115.0 |
120.1 |
| C20 |
C19 |
C29 |
120.4 |
119.9 |
| C19 |
C29 |
C28 |
119.7 |
119.7 |
| C19 |
C29 |
H18 |
120.2 |
120.2 |
| C19 |
C20 |
C21 |
119.7 |
120.1 |
| C19 |
C20 |
H9 |
120.1 |
120.0 |
| C20 |
C21 |
C22 |
119.3 |
120.1 |
| C21 |
C20 |
H9 |
120.1 |
120.0 |
| C20 |
C21 |
H10 |
120.3 |
119.9 |
| C28 |
N27 |
H17 |
119.1 |
120.5 |
| C21 |
C22 |
O23 |
120.3 |
120.5 |
| C22 |
C21 |
H10 |
120.4 |
120.0 |
| C22 |
O23 |
C24 |
112.3 |
116.7 |
| C25 |
C24 |
H11 |
108.7 |
109.5 |
| C25 |
C24 |
H12 |
108.7 |
109.4 |
| O23 |
C24 |
H11 |
108.8 |
109.4 |
| O23 |
C24 |
H12 |
108.7 |
109.4 |
| H1 |
C1 |
H2 |
109.5 |
109.5 |
| H1 |
C1 |
H3 |
109.4 |
109.4 |
| H2 |
C1 |
H3 |
109.4 |
109.5 |
| H4 |
C7 |
H5 |
109.4 |
109.5 |
| H11 |
C24 |
H12 |
109.4 |
109.5 |
| H14 |
C5 |
H15 |
109.5 |
109.5 |
Torsion Angles for ECV
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C3 |
O4 |
C5 |
176.4 |
180.0 |
| O4 |
C3 |
C5 |
C6 |
202.8 |
91.1 |
| O4 |
C3 |
C5 |
H14 |
323.9 |
211.1 |
| O4 |
C3 |
C5 |
H15 |
81.8 |
331.1 |
| C1 |
N2 |
C3 |
O4 |
15.3 |
0.0 |
| O4 |
C3 |
N2 |
H13 |
195.3 |
180.0 |
| O4 |
C3 |
C5 |
N2 |
176.7 |
180.0 |
| C1 |
N2 |
C3 |
C5 |
191.9 |
180.0 |
| C5 |
C3 |
N2 |
H13 |
11.9 |
360.0 |
| C3 |
C5 |
C6 |
N16 |
278.7 |
315.0 |
| C6 |
C5 |
C3 |
H14 |
238.9 |
240.0 |
| C6 |
C5 |
C3 |
H15 |
121.1 |
120.0 |
| C3 |
C5 |
C6 |
H16 |
41.0 |
75.9 |
| H14 |
C5 |
C3 |
H15 |
242.2 |
240.0 |
| O4 |
C3 |
N2 |
C5 |
183.4 |
180.0 |
| N2 |
C3 |
C5 |
C6 |
26.1 |
271.1 |
| N2 |
C3 |
C5 |
H14 |
147.2 |
31.1 |
| N2 |
C3 |
C5 |
H15 |
265.0 |
151.1 |
| C3 |
N2 |
C1 |
H1 |
180.0 |
300.0 |
| C3 |
N2 |
C1 |
H2 |
300.0 |
60.0 |
| C3 |
N2 |
C1 |
H3 |
60.0 |
180.0 |
| C1 |
N2 |
C3 |
H13 |
180.0 |
180.0 |
| O4 |
C3 |
N2 |
C1 |
15.3 |
0.0 |
| C3 |
N2 |
C1 |
H13 |
180.0 |
180.0 |
| H1 |
C1 |
N2 |
H2 |
240.0 |
240.0 |
| H1 |
C1 |
N2 |
H3 |
120.0 |
120.0 |
| H2 |
C1 |
N2 |
H3 |
240.0 |
240.0 |
| C3 |
C5 |
C6 |
H14 |
121.1 |
120.0 |
| C3 |
C5 |
C6 |
H15 |
238.9 |
240.0 |
| C5 |
C6 |
C7 |
H4 |
182.8 |
181.2 |
| C5 |
C6 |
C7 |
H5 |
301.9 |
301.4 |
| C5 |
C6 |
N16 |
C17 |
125.2 |
102.4 |
| N16 |
C6 |
C5 |
H16 |
237.7 |
239.1 |
| H14 |
C5 |
C6 |
H15 |
117.8 |
120.0 |
| C3 |
C5 |
C6 |
C7 |
158.3 |
196.8 |
| O8 |
C7 |
C6 |
H4 |
239.5 |
240.1 |
| O8 |
C7 |
C6 |
H5 |
120.5 |
119.9 |
| H4 |
C7 |
C6 |
H5 |
241.0 |
239.8 |
| N16 |
C6 |
C5 |
H14 |
157.6 |
195.0 |
| N16 |
C6 |
C5 |
H15 |
39.8 |
75.0 |
| C5 |
C6 |
N16 |
H16 |
121.9 |
120.9 |
| N16 |
C6 |
C7 |
H4 |
55.7 |
61.6 |
| N16 |
C6 |
C7 |
H5 |
174.8 |
181.8 |
| C6 |
C7 |
O8 |
H4 |
120.5 |
119.9 |
| C6 |
C7 |
O8 |
H5 |
239.5 |
240.1 |
| H4 |
C7 |
O8 |
H5 |
119.0 |
120.2 |
| C9 |
O8 |
C7 |
H4 |
283.1 |
289.7 |
| C9 |
O8 |
C7 |
H5 |
164.1 |
169.5 |
| O8 |
C9 |
C10 |
H6 |
358.4 |
359.6 |
| C10 |
C9 |
C15 |
C14 |
1.8 |
0.2 |
| C9 |
C10 |
C11 |
F12 |
180.2 |
180.0 |
| C9 |
C10 |
C11 |
C13 |
359.4 |
0.0 |
| C11 |
C10 |
C9 |
H6 |
180.0 |
180.0 |
| C15 |
C9 |
C10 |
C11 |
359.2 |
359.9 |
| C15 |
C9 |
C10 |
H6 |
179.3 |
179.9 |
| C9 |
C15 |
C14 |
H8 |
178.5 |
180.0 |
| N16 |
C15 |
C14 |
H8 |
1.9 |
359.7 |
| C17 |
N16 |
C6 |
H16 |
3.3 |
341.5 |
| N16 |
C17 |
C19 |
C29 |
140.9 |
151.0 |
| C11 |
C10 |
C9 |
C15 |
359.2 |
359.9 |
| C9 |
C10 |
C11 |
H6 |
180.0 |
180.0 |
| C13 |
C11 |
C10 |
F12 |
179.2 |
180.0 |
| C10 |
C11 |
C13 |
H7 |
180.9 |
180.1 |
| C15 |
C14 |
C13 |
H7 |
180.2 |
180.0 |
| O18 |
C17 |
C19 |
C29 |
321.7 |
331.1 |
| C10 |
C11 |
F12 |
C13 |
179.2 |
180.0 |
| F12 |
C11 |
C10 |
H6 |
0.2 |
0.0 |
| F12 |
C11 |
C13 |
H7 |
0.1 |
0.1 |
| C10 |
C11 |
C13 |
F12 |
180.8 |
180.0 |
| C13 |
C11 |
C10 |
H6 |
179.4 |
180.1 |
| C14 |
C13 |
C11 |
H7 |
180.0 |
179.9 |
| C9 |
C15 |
C14 |
C13 |
358.5 |
359.8 |
| C14 |
C13 |
C11 |
F12 |
180.1 |
180.0 |
| C11 |
C13 |
C14 |
H7 |
180.0 |
180.1 |
| C20 |
C19 |
C17 |
C29 |
179.8 |
179.7 |
| C17 |
C19 |
C29 |
C28 |
179.0 |
179.7 |
| C17 |
C19 |
C29 |
H18 |
359.0 |
359.7 |
| C17 |
C19 |
C20 |
H9 |
359.8 |
0.2 |
| C29 |
C19 |
C20 |
C21 |
359.6 |
359.9 |
| C29 |
C19 |
C20 |
H9 |
179.6 |
179.9 |
| C17 |
C19 |
C20 |
C29 |
180.3 |
180.3 |
| C20 |
C19 |
C29 |
C28 |
359.2 |
0.0 |
| C20 |
C19 |
C29 |
H18 |
179.3 |
180.0 |
| C19 |
C20 |
C21 |
C22 |
0.2 |
0.1 |
| C21 |
C20 |
C19 |
H9 |
180.0 |
180.0 |
| C19 |
C20 |
C21 |
H10 |
180.2 |
180.0 |
| C19 |
C29 |
C28 |
H18 |
180.0 |
180.0 |
| C29 |
C28 |
N27 |
H17 |
8.2 |
15.5 |
| C21 |
C20 |
C19 |
C29 |
359.6 |
359.9 |
| C19 |
C20 |
C21 |
H9 |
180.0 |
180.0 |
| C20 |
C21 |
C22 |
O23 |
177.9 |
180.0 |
| C22 |
C21 |
C20 |
H10 |
180.0 |
180.1 |
| C19 |
C29 |
C28 |
N27 |
181.7 |
180.1 |
| C19 |
C29 |
C28 |
C22 |
2.2 |
0.0 |
| C28 |
C22 |
C21 |
H10 |
181.2 |
180.0 |
| C22 |
C21 |
C20 |
H9 |
180.2 |
180.1 |
| C20 |
C21 |
C22 |
H10 |
180.0 |
179.9 |
| C21 |
C22 |
O23 |
C24 |
150.6 |
147.0 |
| N27 |
C25 |
C24 |
H11 |
74.9 |
208.5 |
| N27 |
C25 |
C24 |
H12 |
194.0 |
88.6 |
| O23 |
C22 |
C21 |
H10 |
357.9 |
0.0 |
| C22 |
O23 |
C24 |
H11 |
294.3 |
166.7 |
| C22 |
O23 |
C24 |
H12 |
175.2 |
286.6 |
| O26 |
C25 |
C24 |
H11 |
257.6 |
28.6 |
| O26 |
C25 |
C24 |
H12 |
16.7 |
268.7 |
| O23 |
C24 |
C25 |
H11 |
239.5 |
120.0 |
| O23 |
C24 |
C25 |
H12 |
120.4 |
240.0 |
| H11 |
C24 |
C25 |
H12 |
240.9 |
120.0 |
| C25 |
C24 |
O23 |
H11 |
120.4 |
240.0 |
| C25 |
C24 |
O23 |
H12 |
239.5 |
120.0 |
| H11 |
C24 |
O23 |
H12 |
119.1 |
240.1 |
| H1 |
C1 |
N2 |
C3 |
180.0 |
300.0 |
| N2 |
C1 |
H1 |
H2 |
120.0 |
120.0 |
| N2 |
C1 |
H1 |
H3 |
240.0 |
240.0 |
| H1 |
C1 |
N2 |
H13 |
360.0 |
120.0 |
| H2 |
C1 |
H1 |
H3 |
120.0 |
120.0 |
| H2 |
C1 |
N2 |
C3 |
300.0 |
60.0 |
| N2 |
C1 |
H2 |
H1 |
239.9 |
240.0 |
| N2 |
C1 |
H2 |
H3 |
120.0 |
120.1 |
| H2 |
C1 |
N2 |
H13 |
120.0 |
240.0 |
| H1 |
C1 |
H2 |
H3 |
240.0 |
240.0 |
| H3 |
C1 |
N2 |
C3 |
60.0 |
180.0 |
| N2 |
C1 |
H3 |
H1 |
120.1 |
120.0 |
| N2 |
C1 |
H3 |
H2 |
240.0 |
240.0 |
| H3 |
C1 |
N2 |
H13 |
240.0 |
0.0 |
| H1 |
C1 |
H3 |
H2 |
120.0 |
120.0 |
| C6 |
C7 |
H4 |
H5 |
118.6 |
120.3 |
| O8 |
C7 |
H4 |
H5 |
241.5 |
239.8 |
| C6 |
C7 |
H5 |
H4 |
241.4 |
239.8 |
| O8 |
C7 |
H5 |
H4 |
118.5 |
120.2 |
| H6 |
C10 |
C9 |
C15 |
179.3 |
179.9 |
| C9 |
C10 |
H6 |
C11 |
180.0 |
180.0 |
| H6 |
C10 |
C11 |
F12 |
0.2 |
0.0 |
| H6 |
C10 |
C11 |
C13 |
179.4 |
180.1 |
| H7 |
C13 |
C11 |
F12 |
0.1 |
0.1 |
| H8 |
C14 |
C13 |
H7 |
0.2 |
359.9 |
| H9 |
C20 |
C19 |
C29 |
179.6 |
179.9 |
| C19 |
C20 |
H9 |
C21 |
180.0 |
180.0 |
| H9 |
C20 |
C21 |
C22 |
180.2 |
180.1 |
| H9 |
C20 |
C21 |
H10 |
0.2 |
0.0 |
| C20 |
C21 |
H10 |
C22 |
180.0 |
180.1 |
| H10 |
C21 |
C20 |
H9 |
0.2 |
0.0 |
| H10 |
C21 |
C22 |
O23 |
357.9 |
0.0 |
| C25 |
C24 |
H11 |
H12 |
118.6 |
240.1 |
| O23 |
C24 |
H11 |
H12 |
241.4 |
119.9 |
| C25 |
C24 |
H12 |
H11 |
241.4 |
120.0 |
| O23 |
C24 |
H12 |
H11 |
118.7 |
240.1 |
| H13 |
N2 |
C3 |
C5 |
11.9 |
360.0 |
| C1 |
N2 |
H13 |
C3 |
180.0 |
180.0 |
| H13 |
N2 |
C1 |
H1 |
360.0 |
120.0 |
| H13 |
N2 |
C1 |
H2 |
120.0 |
240.0 |
| H13 |
N2 |
C1 |
H3 |
240.0 |
0.0 |
| C3 |
C5 |
H14 |
C6 |
233.1 |
240.0 |
| C3 |
C5 |
H14 |
H15 |
116.6 |
120.0 |
| H14 |
C5 |
C6 |
N16 |
157.6 |
195.0 |
| C6 |
C5 |
H14 |
H15 |
243.4 |
240.0 |
| H14 |
C5 |
C6 |
H16 |
279.9 |
315.9 |
| C3 |
C5 |
H15 |
C6 |
126.9 |
120.0 |
| C3 |
C5 |
H15 |
H14 |
243.4 |
240.0 |
| H15 |
C5 |
C6 |
N16 |
39.8 |
75.0 |
| C6 |
C5 |
H15 |
H14 |
116.5 |
120.0 |
| H15 |
C5 |
C6 |
H16 |
162.1 |
195.9 |
| C5 |
C6 |
H16 |
N16 |
232.6 |
239.1 |
| H16 |
C6 |
C5 |
H14 |
279.9 |
315.9 |
| H16 |
C6 |
C5 |
H15 |
162.1 |
195.9 |
| H16 |
C6 |
C7 |
H4 |
300.1 |
302.1 |
| H16 |
C6 |
C7 |
H5 |
59.1 |
62.3 |
| H16 |
C6 |
N16 |
C17 |
3.3 |
341.5 |
| C19 |
C29 |
H18 |
C28 |
180.0 |
180.0 |