PDB Chemical Component EBT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for EBT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C O 1.254 1.208
C CA 1.538 1.508
C OXT 1.257 1.342
N CA 1.493 1.465
N CAM 1.345 1.347
CA CB 1.545 1.530
CB CG 1.549 1.530
CG CD1 1.548 1.530
CG CD2 1.540 1.530
OAA CAK 1.433 1.428
OAB CAM 1.229 1.213
NAF CAJ 1.472 1.469
CAJ CAK 1.546 1.529
CAJ CAL 1.539 1.530
CAK CAM 1.527 1.507
CAL CAP 1.541 1.507
CAP CAR 1.394 1.383
CAP CAS 1.390 1.382
CAR CAT 1.388 1.383
CAS CAU 1.389 1.382
CAT CAV 1.385 1.382
CAU CAV 1.393 1.382
N HN 1.000 0.970
CA HA 1.100 1.089
CB HB 1.100 1.089
CB HBA 1.100 1.091
CG HG 1.100 1.090
OAA HOAA 0.949 0.968
NAF HNAF 1.000 1.009
NAF HNAA 1.000 1.009
CAJ HAJ 1.100 1.091
CAK HAK 1.101 1.091
CAL HAL 1.100 1.090
CAL HALA 1.100 1.090
CAR HAR 1.080 1.080
CAS HAS 1.080 1.080
CAT HAT 1.080 1.081
CAU HAU 1.080 1.080
CAV HAV 1.080 1.080
CD1 HD1 1.100 1.090
CD1 HD1A 1.100 1.090
CD1 HD1B 1.100 1.091
CD2 HD2 1.100 1.090
CD2 HD2A 1.100 1.090
CD2 HD2B 1.100 1.090
OXT HOXT 0.950 0.967

Bond Angles for EBT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O C CA 117.2 120.0
O C OXT 126.0 120.0
CA C OXT 116.8 120.0
C CA N 111.7 109.4
C CA CB 108.8 109.4
C CA HA 109.8 109.4
C OXT HOXT 109.5 117.0
CA N CAM 122.0 120.0
N CA CB 113.1 109.5
CA N HN 119.0 120.0
N CA HA 105.2 109.5
N CAM OAB 124.5 120.0
N CAM CAK 116.9 120.0
CAM N HN 119.0 120.0
CA CB CG 107.5 109.5
CB CA HA 108.2 109.5
CA CB HB 110.1 109.5
CA CB HBA 110.1 109.5
CB CG CD1 112.9 109.5
CB CG CD2 111.5 109.5
CG CB HB 110.1 109.5
CG CB HBA 110.1 109.4
CB CG HG 106.6 109.4
CD1 CG CD2 112.3 109.5
CD1 CG HG 105.7 109.5
CG CD1 HD1 109.5 109.5
CG CD1 HD1A 109.5 109.5
CG CD1 HD1B 109.5 109.5
CD2 CG HG 107.3 109.5
CG CD2 HD2 109.5 109.5
CG CD2 HD2A 109.5 109.4
CG CD2 HD2B 109.5 109.4
OAA CAK CAJ 110.4 109.5
OAA CAK CAM 106.8 109.5
CAK OAA HOAA 109.5 114.0
OAA CAK HAK 111.3 109.5
OAB CAM CAK 118.6 120.0
NAF CAJ CAK 109.9 109.5
NAF CAJ CAL 108.9 109.5
CAJ NAF HNAF 109.5 111.0
CAJ NAF HNAA 109.4 111.1
NAF CAJ HAJ 110.3 109.4
CAK CAJ CAL 111.8 109.5
CAJ CAK CAM 111.3 109.5
CAK CAJ HAJ 107.4 109.5
CAJ CAK HAK 106.8 109.4
CAJ CAL CAP 112.6 109.5
CAL CAJ HAJ 108.4 109.4
CAJ CAL HAL 108.5 109.5
CAJ CAL HALA 108.4 109.4
CAM CAK HAK 110.3 109.4
CAL CAP CAR 120.4 120.0
CAL CAP CAS 120.0 120.0
CAP CAL HAL 108.5 109.4
CAP CAL HALA 108.5 109.5
CAR CAP CAS 119.6 120.0
CAP CAR CAT 121.0 120.0
CAP CAR HAR 119.5 120.0
CAP CAS CAU 119.3 120.0
CAP CAS HAS 120.4 120.0
CAR CAT CAV 119.4 120.0
CAT CAR HAR 119.5 120.0
CAR CAT HAT 120.3 120.0
CAS CAU CAV 121.0 120.0
CAU CAS HAS 120.4 120.0
CAS CAU HAU 119.5 120.0
CAT CAV CAU 119.7 120.0
CAV CAT HAT 120.3 120.0
CAT CAV HAV 120.1 120.0
CAV CAU HAU 119.5 120.0
CAU CAV HAV 120.1 120.0
HB CB HBA 108.8 109.5
HNAF NAF HNAA 109.5 111.0
HAL CAL HALA 110.4 109.5
HD1 CD1 HD1A 109.4 109.5
HD1 CD1 HD1B 109.5 109.5
HD1A CD1 HD1B 109.5 109.5
HD2 CD2 HD2A 109.5 109.5
HD2 CD2 HD2B 109.4 109.5
HD2A CD2 HD2B 109.5 109.5

Torsion Angles for EBT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CA C O OXT 181.1 180.3
O C CA N 349.8 360.0
O C CA CB 115.3 120.0
O C CA HA 233.6 240.0
O C OXT HOXT 0.0 0.0
O C CA OXT 179.0 179.7
CA C OXT HOXT 178.9 179.8
C CA N CAM 267.6 275.0
N CA C CB 234.5 240.0
C CA N HN 87.6 95.0
N CA C HA 116.2 120.0
C CA CB CG 68.1 175.0
CB CA C HA 241.7 240.0
C CA CB HB 188.1 295.0
C CA CB HBA 308.1 55.0
O C OXT CA 181.1 180.3
OXT C CA N 170.8 180.3
OXT C CA CB 296.3 300.2
OXT C CA HA 54.6 60.3
N CA C OXT 170.8 180.3
C CA N CB 123.1 120.0
C CA N HA 241.0 240.0
CA N CAM OAB 0.5 355.1
CA N CAM CAK 180.8 175.1
CAM N CA HN 180.0 180.0
N CA CB CG 192.8 294.9
CB CA N HA 117.9 120.1
N CA CB HB 312.8 55.0
N CA CB HBA 72.8 175.0
CAM N CA CB 144.5 155.0
CA N CAM HN 180.0 180.0
CAM N CA HA 26.7 34.9
OAA CAK CAM N 180.6 190.5
OAB CAM N CAK 179.7 180.0
CAJ CAK CAM N 60.1 70.4
N CAM CAK HAK 301.7 310.5
CB CA C OXT 296.3 300.2
C CA CB N 235.3 240.0
C CA CB HA 119.3 120.0
CB CA N CAM 144.5 155.0
CB CA N HN 324.5 335.0
N CA CB HA 243.9 239.9
CA CB CG CD1 122.4 175.0
CA CB CG CD2 250.0 295.1
CG CB CA HB 240.0 240.0
CG CB CA HBA 120.0 119.9
CA CB CG HG 6.8 55.0
HB CB CA HBA 240.0 240.0
CG CB CA HA 308.9 55.0
CA CB CG HB 120.0 120.1
CA CB CG HBA 240.0 240.1
CD1 CG CB CD2 232.4 239.9
CD1 CG CB HG 115.6 120.0
CB CG CD1 HD1 180.0 60.0
CB CG CD1 HD1A 300.0 180.1
CB CG CD1 HD1B 60.0 300.1
CD2 CG CB HG 243.2 240.0
CB CG CD2 HD2 180.0 59.9
CB CG CD2 HD2A 300.0 180.0
CB CG CD2 HD2B 60.0 300.0
HB CB CG HBA 120.0 120.0
CB CG CD1 CD2 127.1 120.1
CD1 CG CB HB 2.4 54.9
CD1 CG CB HBA 242.4 294.9
CB CG CD1 HG 243.8 240.1
CD2 CG CD1 HG 116.7 120.1
CD1 CG CD2 HD2 307.9 180.0
CD1 CG CD2 HD2A 67.9 300.0
CD1 CG CD2 HD2B 187.9 60.0
HD1 CD1 CG HD1A 240.0 240.0
HD1 CD1 CG HD1B 120.0 120.0
HD1A CD1 CG HD1B 240.0 240.0
CB CG CD2 CD1 232.1 240.0
CD2 CG CB HB 130.0 175.0
CD2 CG CB HBA 10.0 55.0
CB CG CD2 HG 116.4 119.9
CD1 CG CD2 HG 244.3 240.0
CD2 CG CD1 HD1 52.9 300.0
CD2 CG CD1 HD1A 172.9 60.0
CD2 CG CD1 HD1B 292.9 180.0
HD2 CD2 CG HD2A 240.0 240.0
HD2 CD2 CG HD2B 120.0 120.0
HD2A CD2 CG HD2B 240.0 240.0
N CAM CAK OAA 180.6 190.5
OAB CAM CAK OAA 0.9 10.5
NAF CAJ CAK OAA 272.4 175.1
OAA CAK CAJ CAL 151.2 55.0
CAJ CAK OAA CAM 121.1 120.0
OAA CAK CAJ HAJ 32.4 295.0
CAJ CAK OAA HAK 241.6 240.0
CAM CAK OAA HAK 120.5 120.0
N CAM OAB CAK 180.3 180.0
OAB CAM N HN 180.5 175.1
OAA CAK CAM OAB 0.9 10.5
CAJ CAK CAM OAB 240.3 250.4
OAB CAM CAK HAK 122.0 130.5
OAA CAK CAJ NAF 272.4 175.1
CAK CAJ NAF CAL 237.1 239.9
NAF CAJ CAK CAM 30.8 295.1
CAK CAJ NAF HAJ 118.2 120.0
NAF CAJ CAK HAK 151.3 55.1
NAF CAJ CAL CAP 119.4 65.0
CAL CAJ NAF HAJ 241.1 240.0
NAF CAJ CAL HAL 239.4 184.9
NAF CAJ CAL HALA 359.3 304.9
HNAF NAF CAJ HNAA 240.0 236.0
N CAM CAK CAJ 60.1 70.4
OAA CAK CAJ CAM 241.6 240.0
CAJ CAK OAA HOAA 120.7 60.0
OAA CAK CAJ HAK 121.1 120.0
OAB CAM CAK CAJ 240.3 250.4
NAF CAJ CAK CAL 121.2 120.1
CAK CAJ NAF HNAF 180.0 307.0
CAK CAJ NAF HNAA 300.0 70.9
NAF CAJ CAK HAJ 239.9 240.0
CAK CAJ CAL CAP 241.1 185.0
CAL CAJ CAK HAJ 118.8 120.0
CAK CAJ CAL HAL 1.1 305.0
CAK CAJ CAL HALA 121.1 65.0
CAM CAK CAJ HAK 239.5 240.1
NAF CAJ CAL CAK 238.3 239.9
CAL CAJ NAF HNAF 302.9 67.1
CAL CAJ NAF HNAA 62.9 191.0
NAF CAJ CAL HAJ 120.1 119.9
CAL CAJ CAK CAM 269.6 175.0
CAK CAJ CAL HAJ 241.8 240.0
CAL CAJ CAK HAK 30.1 295.0
CAJ CAL CAP CAR 76.9 90.0
CAJ CAL CAP CAS 256.4 269.8
CAP CAL CAJ HAL 240.0 240.0
CAP CAL CAJ HALA 120.0 120.0
HAL CAL CAJ HALA 240.0 240.0
N CAM CAK OAB 179.7 180.0
CAK CAM N HN 0.8 355.1
OAA CAK CAM CAJ 120.6 120.1
CAM CAK OAA HOAA 359.6 299.9
OAA CAK CAM HAK 238.9 240.0
CAM CAK CAJ CAL 269.6 175.0
CAM CAK CAJ HAJ 150.9 55.1
CAJ CAK CAM HAK 118.4 119.9
CAP CAL CAJ HAJ 359.3 305.0
CAJ CAL CAP HAL 120.0 120.0
CAJ CAL CAP HALA 240.0 240.0
CAR CAP CAL CAS 180.5 180.3
CAL CAP CAR CAT 179.6 180.0
CAL CAP CAR HAR 359.6 359.9
CAL CAP CAS CAU 180.3 180.0
CAL CAP CAS HAS 0.3 359.9
HAL CAL CAP HALA 120.0 120.0
CAL CAP CAR CAS 179.5 179.7
CAR CAP CAL HAL 316.9 330.0
CAR CAP CAL HALA 196.9 210.0
CAR CAP CAS CAU 359.8 359.7
CAR CAP CAS HAS 179.8 179.7
CAP CAR CAT CAV 359.9 359.9
CAT CAR CAP HAR 180.0 180.1
CAP CAR CAT HAT 179.9 179.9
CAL CAP CAS CAR 180.5 180.3
CAS CAP CAL HAL 136.4 149.8
CAS CAP CAL HALA 16.4 29.8
CAS CAP CAR CAT 0.1 0.3
CAS CAP CAR HAR 180.1 180.2
CAP CAS CAU CAV 0.3 0.0
CAU CAS CAP HAS 180.0 180.1
CAP CAS CAU HAU 180.3 179.9
CAT CAR CAP CAS 0.1 0.3
CAP CAR CAT HAR 180.0 179.9
CAR CAT CAV CAU 0.2 359.9
CAV CAT CAR HAT 180.0 180.0
CAR CAT CAV HAV 180.2 180.0
CAP CAS CAU HAS 180.0 179.9
CAT CAV CAU CAS 359.7 0.2
CAV CAU CAS HAU 180.0 180.1
CAS CAU CAV HAV 179.7 180.1
CAV CAT CAR HAR 179.9 180.0
CAR CAT CAV HAT 180.0 180.0
CAS CAU CAV CAT 359.7 0.2
CAT CAV CAU HAU 179.7 180.3
CAU CAV CAT HAV 180.0 179.9
CAV CAU CAS HAS 180.3 180.1
CAS CAU CAV HAU 180.0 179.9
CAU CAV CAT HAT 180.2 179.8
CAT CAV CAU HAV 180.0 180.1
CA N HN CAM 180.0 180.0
HN N CA CB 324.5 335.0
HN N CA HA 206.7 215.0
HN N CAM OAB 180.5 175.1
HN N CAM CAK 0.8 355.1
HA CA C OXT 54.6 60.3
C CA HA N 120.3 120.0
C CA HA CB 241.4 240.0
HA CA N CAM 26.7 34.9
N CA HA CB 121.1 120.1
HA CA N HN 206.7 215.0
HA CA CB CG 308.9 55.0
HA CA CB HB 68.8 175.0
HA CA CB HBA 188.8 295.1
CA CB HB CG 241.6 240.0
HB CB CA HA 68.8 175.0
CA CB HB HBA 120.8 120.0
HB CB CG CD1 2.4 54.9
HB CB CG CD2 130.0 175.0
CG CB HB HBA 239.2 240.1
HB CB CG HG 246.8 295.0
CA CB HBA CG 118.4 120.0
HBA CB CA HA 188.8 295.1
CA CB HBA HB 239.2 239.9
HBA CB CG CD1 242.4 294.9
HBA CB CG CD2 10.0 55.0
CG CB HBA HB 120.8 120.0
HBA CB CG HG 126.8 175.0
CB CG HG CD1 120.4 120.0
CB CG HG CD2 240.4 240.0
HG CG CB HB 246.8 295.0
HG CG CB HBA 126.8 175.0
CD1 CG HG CD2 120.1 120.1
HG CG CD1 HD1 296.2 179.9
HG CG CD1 HD1A 56.2 299.9
HG CG CD1 HD1B 176.2 59.9
HG CG CD2 HD2 63.6 300.0
HG CG CD2 HD2A 183.6 60.1
HG CG CD2 HD2B 303.6 180.1
HOAA OAA CAK CAJ 120.7 60.0
HOAA OAA CAK CAM 359.6 299.9
HOAA OAA CAK HAK 239.1 180.0
HNAF NAF CAJ CAK 180.0 307.0
HNAF NAF CAJ CAL 302.9 67.1
CAJ NAF HNAF HNAA 120.0 124.0
HNAF NAF CAJ HAJ 61.8 187.0
HNAA NAF CAJ CAK 300.0 70.9
HNAA NAF CAJ CAL 62.9 191.0
CAJ NAF HNAA HNAF 240.0 236.0
HNAA NAF CAJ HAJ 181.8 311.0
NAF CAJ HAJ CAK 119.8 120.0
NAF CAJ HAJ CAL 240.8 240.0
HAJ CAJ NAF HNAF 61.8 187.0
HAJ CAJ NAF HNAA 181.8 311.0
CAK CAJ HAJ CAL 121.0 120.0
HAJ CAJ CAK CAM 150.9 55.1
HAJ CAJ CAK HAK 271.3 175.0
HAJ CAJ CAL CAP 359.3 305.0
HAJ CAJ CAL HAL 119.3 65.0
HAJ CAJ CAL HALA 239.3 185.0
OAA CAK HAK CAJ 239.5 240.0
OAA CAK HAK CAM 118.4 120.0
HAK CAK OAA HOAA 239.1 180.0
HAK CAK CAJ CAL 30.1 295.0
CAJ CAK HAK CAM 238.9 240.0
HAK CAK CAJ HAJ 271.3 175.0
CAJ CAL HAL CAP 237.4 240.0
HAL CAL CAJ HAJ 119.3 65.0
CAJ CAL HAL HALA 118.7 120.0
HAL CAL CAP CAR 316.9 330.0
HAL CAL CAP CAS 136.4 149.8
CAP CAL HAL HALA 241.3 240.0
CAJ CAL HALA CAP 122.6 120.0
HALA CAL CAJ HAJ 239.3 185.0
CAJ CAL HALA HAL 241.3 240.0
HALA CAL CAP CAR 196.9 210.0
HALA CAL CAP CAS 16.4 29.8
CAP CAL HALA HAL 118.7 120.0
HAR CAR CAP CAS 180.1 180.2
CAP CAR HAR CAT 180.0 180.1
HAR CAR CAT CAV 179.9 180.0
HAR CAR CAT HAT 359.9 0.1
CAP CAS HAS CAU 180.0 180.1
HAS CAS CAU CAV 180.3 180.1
HAS CAS CAU HAU 0.3 360.0
CAR CAT HAT CAV 180.0 180.0
HAT CAT CAR HAR 359.9 0.1
HAT CAT CAV CAU 180.2 179.8
HAT CAT CAV HAV 0.2 359.9
CAS CAU HAU CAV 180.0 180.1
HAU CAU CAS HAS 0.3 360.0
HAU CAU CAV HAV 359.7 0.2
CAT CAV HAV CAU 180.0 179.9
HAV CAV CAT HAT 0.2 359.9
HAV CAV CAU HAU 359.7 0.2
HD1 CD1 CG CD2 52.9 300.0
HD1 CD1 CG HG 296.2 179.9
CG CD1 HD1 HD1A 120.0 120.0
CG CD1 HD1 HD1B 240.0 240.0
HD1A CD1 HD1 HD1B 120.0 120.0
HD1A CD1 CG CD2 172.9 60.0
HD1A CD1 CG HG 56.2 299.9
CG CD1 HD1A HD1 240.0 240.0
CG CD1 HD1A HD1B 120.0 120.0
HD1 CD1 HD1A HD1B 240.0 240.0
HD1B CD1 CG CD2 292.9 180.0
HD1B CD1 CG HG 176.2 59.9
CG CD1 HD1B HD1 120.1 120.0
CG CD1 HD1B HD1A 240.0 240.0
HD1 CD1 HD1B HD1A 120.0 120.0
HD2 CD2 CG HG 63.6 300.0
CG CD2 HD2 HD2A 120.0 120.0
CG CD2 HD2 HD2B 240.0 240.0
HD2A CD2 HD2 HD2B 120.0 120.0
HD2A CD2 CG HG 183.6 60.1
CG CD2 HD2A HD2 240.0 240.0
CG CD2 HD2A HD2B 120.0 120.0
HD2 CD2 HD2A HD2B 240.0 240.0
HD2B CD2 CG HG 303.6 180.1
CG CD2 HD2B HD2 120.0 120.0
CG CD2 HD2B HD2A 240.0 240.0
HD2 CD2 HD2B HD2A 120.0 120.1