PDB Chemical Component EBP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for EBP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.380	1.381
C1	C6	1.401	1.382
C1	C7	1.480	1.506
C2	C3	1.438	1.382
C2	H2	1.103	1.080
C3	C4	1.345	1.383
C3	H3	1.104	1.080
C4	C5	1.417	1.381
C4	C8	1.507	1.507
C5	C6	1.433	1.383
C5	H5	1.103	1.080
C6	H6	1.103	1.080
C7	P	1.788	1.822
C7	H71	1.115	1.089
C7	H72	1.116	1.091
C8	H81	1.115	1.089
C8	H82	1.114	1.090
C8	H83	1.116	1.090
C9	C10	1.460	1.530
C9	O1	1.457	1.429
C9	H91	1.115	1.090
C9	H92	1.115	1.089
C10	H101	1.115	1.090
C10	H102	1.114	1.089
C10	H103	1.116	1.091
C11	C12	1.453	1.531
C11	O2	1.491	1.428
C11	H111	1.115	1.091
C11	H112	1.116	1.090
C12	H121	1.116	1.090
C12	H122	1.115	1.090
C12	H123	1.115	1.089
P	O1	1.558	1.610
P	O2	1.596	1.609
P	O3	1.450	1.479

Bond Angles for EBP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	120.5	120.0
C2	C1	C7	121.7	120.0
C1	C2	C3	119.8	120.0
C1	C2	H2	118.1	120.0
C6	C1	C7	117.8	120.0
C1	C6	C5	119.7	120.0
C1	C6	H6	119.0	120.0
C1	C7	P	110.3	109.5
C1	C7	H71	111.9	109.5
C1	C7	H72	111.9	109.5
C3	C2	H2	122.1	120.0
C2	C3	C4	120.1	120.0
C2	C3	H3	123.2	120.0
C4	C3	H3	116.7	120.0
C3	C4	C5	121.7	120.0
C3	C4	C8	119.3	120.0
C5	C4	C8	119.0	120.0
C4	C5	C6	118.3	120.0
C4	C5	H5	120.3	120.0
C4	C8	H81	119.3	109.5
C4	C8	H82	108.6	109.5
C4	C8	H83	108.6	109.5
C6	C5	H5	121.4	120.0
C5	C6	H6	121.3	120.0
P	C7	H71	111.9	109.5
P	C7	H72	111.9	109.5
C7	P	O1	111.2	109.5
C7	P	O2	101.4	109.5
C7	P	O3	110.7	109.5
H71	C7	H72	98.5	109.4
H81	C8	H82	108.8	109.5
H81	C8	H83	108.7	109.5
H82	C8	H83	101.4	109.4
C10	C9	O1	107.1	109.5
C10	C9	H91	113.1	109.4
C10	C9	H92	113.1	109.5
C9	C10	H101	107.1	109.5
C9	C10	H102	113.1	109.5
C9	C10	H103	113.1	109.4
O1	C9	H91	113.1	109.4
O1	C9	H92	113.1	109.5
C9	O1	P	121.7	106.8
H91	C9	H92	97.3	109.5
H101	C10	H102	113.1	109.6
H101	C10	H103	113.1	109.4
H102	C10	H103	97.3	109.4
C12	C11	O2	110.7	109.5
C12	C11	H111	111.8	109.5
C12	C11	H112	111.8	109.5
C11	C12	H121	110.7	109.4
C11	C12	H122	111.7	109.5
C11	C12	H123	111.8	109.4
O2	C11	H111	111.8	109.5
O2	C11	H112	111.8	109.5
C11	O2	P	119.8	106.8
H111	C11	H112	98.5	109.5
H121	C12	H122	111.8	109.5
H121	C12	H123	111.7	109.4
H122	C12	H123	98.7	109.5
O1	P	O2	101.8	109.5
O1	P	O3	113.4	109.4
O2	P	O3	117.5	109.4

Torsion Angles for EBP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	C7	178.5	180.3
C2	C1	C6	C5	0.9	359.5
C2	C1	C6	H6	180.8	179.9
C2	C1	C7	P	91.5	90.0
C2	C1	C7	H71	216.7	330.0
C2	C1	C7	H72	326.2	210.0
C3	C2	C1	H2	179.9	180.0
C1	C2	C3	C4	1.3	0.0
C1	C2	C3	H3	181.4	179.9
C2	C1	C6	C7	181.4	179.7
C6	C1	C2	C3	358.7	0.3
C6	C1	C2	H2	178.7	180.3
C6	C1	C7	P	272.9	269.7
C6	C1	C7	H71	38.2	149.7
C6	C1	C7	H72	147.7	29.7
C4	C5	C6	C1	359.5	0.4
C1	C6	C5	H5	179.5	180.3
C5	C6	C1	H6	180.1	179.5
C2	C1	C7	C6	178.6	180.3
C7	C1	C2	C3	180.2	180.0
C7	C1	C2	H2	0.2	359.9
C7	C1	C6	C5	179.5	179.8
C7	C1	C6	H6	359.4	0.3
P	C7	C1	H71	234.7	120.0
P	C7	C1	H72	125.3	240.0
C1	C7	P	O1	36.0	180.0
C1	C7	P	O2	288.3	60.0
C1	C7	P	O3	163.0	300.0
H71	C7	C1	H72	250.5	120.0
C3	C2	C1	C6	358.7	0.3
C3	C2	C1	C7	180.2	180.0
C1	C2	C3	H2	180.1	180.0
C4	C3	C2	H3	180.0	180.1
C2	C3	C4	C5	359.1	359.9
C2	C3	C4	C8	179.6	180.0
H2	C2	C1	C6	178.7	180.3
H2	C2	C1	C7	0.2	359.9
C1	C2	H2	C3	179.9	180.0
H2	C2	C3	C4	181.3	180.0
H2	C2	C3	H3	1.3	360.0
C4	C3	C2	H2	181.3	180.0
C2	C3	C4	H3	180.0	179.9
C5	C4	C3	C8	179.4	179.9
C3	C4	C5	C6	0.5	359.9
C3	C4	C5	H5	180.5	180.0
C3	C4	C8	H81	180.0	89.9
C3	C4	C8	H82	305.3	210.0
C3	C4	C8	H83	54.8	329.9
H3	C3	C2	H2	1.3	360.0
C2	C3	H3	C4	180.0	180.1
H3	C3	C4	C5	179.0	180.0
H3	C3	C4	C8	359.6	0.1
C1	C6	C5	C4	359.5	0.4
C5	C4	C3	H3	179.0	180.0
C3	C4	C5	C8	180.6	180.1
C5	C4	C8	H81	0.5	270.0
C5	C4	C8	H82	125.9	30.1
C5	C4	C8	H83	235.3	150.0
C6	C5	C4	H5	180.0	179.9
C4	C5	C6	H6	179.6	180.0
C8	C4	C3	H3	359.6	0.1
C3	C4	C8	C5	179.4	179.9
C8	C4	C5	C6	179.9	179.8
C8	C4	C5	H5	360.0	359.9
H81	C8	C4	H82	234.7	240.0
H81	C8	C4	H83	125.2	120.0
H82	C8	C4	H83	250.5	240.0
C5	C6	C1	C7	179.5	179.8
C1	C6	C5	H6	179.9	180.5
C6	C5	C4	C8	179.9	179.8
C4	C5	C6	H5	180.0	180.1
H5	C5	C4	C8	360.0	359.9
C4	C5	H5	C6	180.0	179.9
H5	C5	C6	H6	359.5	359.8
H6	C6	C1	C7	359.4	0.3
C1	C6	H6	C5	180.1	179.5
H6	C6	C5	H5	359.5	359.8
C1	C7	P	H71	125.3	240.0
C1	C7	P	H72	234.7	120.0
H71	C7	P	H72	109.4	240.0
C9	O1	P	C7	158.8	70.5
C11	O2	P	C7	297.5	183.3
O1	P	C7	O2	107.6	120.0
O1	P	C7	O3	233.0	240.0
O2	P	C7	O3	125.4	120.0
C1	C7	H71	P	235.6	120.0
C1	C7	H71	H72	117.8	240.0
P	C7	H71	H72	242.2	120.0
H71	C7	P	O1	270.7	300.0
H71	C7	P	O2	163.1	180.0
H71	C7	P	O3	37.7	60.0
C1	C7	H72	P	124.4	240.0
C1	C7	H72	H71	242.2	120.0
P	C7	H72	H71	117.8	240.0
H72	C7	P	O1	161.3	60.0
H72	C7	P	O2	53.6	300.0
H72	C7	P	O3	288.2	180.0
C4	C8	H81	H82	125.3	120.0
C4	C8	H81	H83	234.8	240.0
H82	C8	H81	H83	109.5	120.0
C4	C8	H82	H81	228.7	239.9
C4	C8	H82	H83	114.3	120.0
H81	C8	H82	H83	245.6	240.0
C4	C8	H83	H81	131.2	120.1
C4	C8	H83	H82	245.7	240.0
H81	C8	H83	H82	114.5	120.0
O1	C9	C10	H91	234.7	240.1
O1	C9	C10	H92	125.2	120.1
C10	C9	O1	P	255.2	181.6
H91	C9	C10	H92	250.5	240.0
H101	C10	C9	H102	234.7	239.8
H101	C10	C9	H103	125.2	119.9
H102	C10	C9	H103	250.5	240.1
C7	P	O1	C9	158.8	70.5
C10	C9	O1	H91	125.3	119.9
C10	C9	O1	H92	234.8	239.9
O1	C9	C10	H101	180.0	180.0
O1	C9	C10	H102	305.3	300.1
O1	C9	C10	H103	54.8	60.1
H91	C9	O1	H92	109.5	120.0
C9	O1	P	O2	266.2	190.6
C9	O1	P	O3	33.3	310.5
C10	C9	H91	O1	238.0	240.1
C10	C9	H91	H92	119.0	120.0
H91	C9	C10	H101	305.3	299.9
H91	C9	C10	H102	70.6	60.1
H91	C9	C10	H103	180.0	180.0
O1	C9	H91	H92	241.0	239.9
H91	C9	O1	P	129.9	61.7
C10	C9	H92	O1	121.9	120.0
C10	C9	H92	H91	241.0	240.0
H92	C9	C10	H101	54.7	59.9
H92	C9	C10	H102	180.0	180.0
H92	C9	C10	H103	289.5	300.0
O1	C9	H92	H91	119.0	120.0
H92	C9	O1	P	20.5	301.7
H101	C10	C9	O1	180.0	180.0
H101	C10	C9	H91	305.3	299.9
H101	C10	C9	H92	54.7	59.9
C9	C10	H101	H102	125.3	120.2
C9	C10	H101	H103	234.8	240.1
H102	C10	H101	H103	109.5	120.0
H102	C10	C9	O1	305.3	300.1
H102	C10	C9	H91	70.6	60.1
H102	C10	C9	H92	180.0	180.0
C9	C10	H102	H101	238.0	239.9
C9	C10	H102	H103	119.0	119.9
H101	C10	H102	H103	241.0	240.1
H103	C10	C9	O1	54.8	60.1
H103	C10	C9	H91	180.0	180.0
H103	C10	C9	H92	289.5	300.0
C9	C10	H103	H101	121.9	119.9
C9	C10	H103	H102	241.0	240.0
H101	C10	H103	H102	119.0	120.1
O2	C11	C12	H111	234.7	120.0
O2	C11	C12	H112	125.3	240.0
C12	C11	O2	P	202.5	177.1
H111	C11	C12	H112	250.6	120.0
H121	C12	C11	H122	234.8	240.0
H121	C12	C11	H123	125.2	119.9
H122	C12	C11	H123	250.5	239.9
C7	P	O2	C11	297.5	183.3
C12	C11	O2	H111	125.3	240.0
C12	C11	O2	H112	234.7	120.0
O2	C11	C12	H121	180.0	180.0
O2	C11	C12	H122	305.3	300.0
O2	C11	C12	H123	54.8	60.1
H111	C11	O2	H112	109.4	240.0
O1	P	O2	C11	182.7	63.3
C11	O2	P	O3	58.2	303.3
C12	C11	H111	O2	235.3	120.0
C12	C11	H111	H112	117.6	240.0
H111	C11	C12	H121	305.3	60.0
H111	C11	C12	H122	70.6	180.0
H111	C11	C12	H123	180.1	300.1
O2	C11	H111	H112	242.3	120.0
H111	C11	O2	P	77.2	297.1
C12	C11	H112	O2	124.7	240.0
C12	C11	H112	H111	242.4	120.0
H112	C11	C12	H121	54.7	300.0
H112	C11	C12	H122	179.9	60.0
H112	C11	C12	H123	289.5	180.1
O2	C11	H112	H111	117.7	240.0
H112	C11	O2	P	327.9	57.1
H121	C12	C11	O2	180.0	180.0
H121	C12	C11	H111	305.3	60.0
H121	C12	C11	H112	54.7	300.0
C11	C12	H121	H122	125.2	120.0
C11	C12	H121	H123	234.7	240.1
H122	C12	H121	H123	109.5	120.1
H122	C12	C11	O2	305.3	300.0
H122	C12	C11	H111	70.6	180.0
H122	C12	C11	H112	179.9	60.0
C11	C12	H122	H121	235.4	240.0
C11	C12	H122	H123	117.7	120.0
H121	C12	H122	H123	242.3	240.0
H123	C12	C11	O2	54.8	60.1
H123	C12	C11	H111	180.1	300.1
H123	C12	C11	H112	289.5	180.1
C11	C12	H123	H121	124.6	119.9
C11	C12	H123	H122	242.3	240.0
H121	C12	H123	H122	117.7	120.1
O1	P	C7	H71	270.7	300.0
O1	P	C7	H72	161.3	60.0
C7	P	O1	O2	252.6	239.9
C7	P	O1	O3	125.5	120.0
P	O1	C9	H91	129.9	61.7
P	O1	C9	H92	20.5	301.7
C11	O2	P	O1	182.7	63.3
O2	P	O1	O3	232.8	240.1
O2	P	C7	H71	163.1	180.0
O2	P	C7	H72	53.6	300.0
C7	P	O2	O1	114.7	120.1
C7	P	O2	O3	239.3	240.0
P	O2	C11	H111	77.2	297.1
P	O2	C11	H112	327.9	57.1
O1	P	O2	O3	124.5	119.9
O3	P	C7	H71	37.7	60.0
O3	P	C7	H72	288.2	180.0
C7	P	O3	O1	234.3	240.0
C7	P	O3	O2	115.8	120.0
O1	P	O3	O2	241.5	240.1