PDB Chemical Component EBE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for EBE
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| F25 |
C15 |
1.353 |
1.351 |
| C16 |
C15 |
1.389 |
1.384 |
| C16 |
C17 |
1.389 |
1.383 |
| C15 |
C14 |
1.399 |
1.385 |
| C17 |
C18 |
1.387 |
1.382 |
| C14 |
C13 |
1.498 |
1.508 |
| C14 |
C19 |
1.405 |
1.382 |
| C13 |
C20 |
1.513 |
1.506 |
| C13 |
C3 |
1.493 |
1.508 |
| C18 |
C19 |
1.391 |
1.383 |
| N22 |
C20 |
1.334 |
1.348 |
| N22 |
O23 |
1.395 |
1.416 |
| C20 |
O21 |
1.224 |
1.212 |
| C4 |
C3 |
1.389 |
1.383 |
| C4 |
C5 |
1.390 |
1.380 |
| C3 |
C2 |
1.395 |
1.383 |
| C5 |
C6 |
1.406 |
1.394 |
| C2 |
C1 |
1.393 |
1.380 |
| C6 |
C1 |
1.400 |
1.394 |
| C6 |
C7 |
1.515 |
1.484 |
| C8 |
C7 |
1.410 |
1.397 |
| C8 |
N9 |
1.346 |
1.322 |
| C7 |
C12 |
1.408 |
1.398 |
| N9 |
C10 |
1.348 |
1.318 |
| C12 |
N11 |
1.344 |
1.322 |
| C10 |
N11 |
1.352 |
1.318 |
| C10 |
C24 |
1.507 |
1.507 |
| C4 |
H1 |
1.080 |
1.079 |
| C5 |
H2 |
1.080 |
1.081 |
| C8 |
H3 |
1.080 |
1.080 |
| C2 |
H4 |
1.080 |
1.080 |
| C1 |
H5 |
1.080 |
1.080 |
| C19 |
H6 |
1.080 |
1.080 |
| C12 |
H7 |
1.080 |
1.080 |
| C13 |
H8 |
1.100 |
1.090 |
| C18 |
H9 |
1.080 |
1.079 |
| C24 |
H10 |
1.100 |
1.090 |
| C24 |
H11 |
1.100 |
1.091 |
| C24 |
H12 |
1.100 |
1.090 |
| N22 |
H13 |
1.000 |
0.971 |
| O23 |
H14 |
0.950 |
0.967 |
| C17 |
H15 |
1.079 |
1.080 |
| C16 |
H16 |
1.081 |
1.080 |
Bond Angles for EBE
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C15 |
C16 |
H16 |
119.8 |
120.1 |
| C16 |
C17 |
H15 |
120.2 |
120.0 |
| C17 |
C18 |
H9 |
119.9 |
120.0 |
| C14 |
C13 |
C20 |
109.4 |
109.5 |
| C14 |
C13 |
H8 |
107.8 |
109.4 |
| C14 |
C19 |
H6 |
119.6 |
120.0 |
| C13 |
C20 |
O21 |
121.0 |
120.0 |
| C20 |
C13 |
H8 |
107.6 |
109.5 |
| C18 |
C19 |
H6 |
119.6 |
120.0 |
| O23 |
N22 |
H13 |
119.9 |
120.0 |
| N22 |
O23 |
H14 |
109.5 |
114.0 |
| C5 |
C4 |
C3 |
120.9 |
120.1 |
| C4 |
C3 |
C2 |
117.9 |
120.3 |
| C3 |
C4 |
H1 |
119.5 |
120.0 |
| C4 |
C5 |
C6 |
122.1 |
119.9 |
| C5 |
C4 |
H1 |
119.5 |
119.9 |
| C4 |
C5 |
H2 |
119.0 |
120.1 |
| C3 |
C2 |
C1 |
121.1 |
120.1 |
| C3 |
C2 |
H4 |
119.4 |
120.0 |
| C5 |
C6 |
C1 |
116.3 |
119.7 |
| C5 |
C6 |
C7 |
121.7 |
120.1 |
| C6 |
C5 |
H2 |
119.0 |
120.0 |
| C6 |
C1 |
C2 |
121.7 |
119.9 |
| C1 |
C2 |
H4 |
119.4 |
120.0 |
| C2 |
C1 |
H5 |
119.2 |
120.1 |
| C7 |
C6 |
C1 |
121.9 |
120.2 |
| C6 |
C1 |
H5 |
119.2 |
120.0 |
| C6 |
C7 |
C12 |
122.2 |
120.9 |
| C8 |
C7 |
C12 |
115.6 |
118.2 |
| C8 |
N9 |
C10 |
121.3 |
121.0 |
| N9 |
C8 |
H3 |
119.4 |
120.6 |
| C7 |
C12 |
N11 |
121.0 |
118.9 |
| C7 |
C12 |
H7 |
119.5 |
120.5 |
| N9 |
C10 |
N11 |
119.5 |
122.0 |
| N9 |
C10 |
C24 |
120.3 |
119.0 |
| C10 |
N11 |
C12 |
121.5 |
121.0 |
| N11 |
C12 |
H7 |
119.5 |
120.5 |
| C24 |
C10 |
N11 |
120.2 |
119.0 |
| C10 |
C24 |
H10 |
109.5 |
109.5 |
| C10 |
C24 |
H11 |
109.5 |
109.5 |
| C10 |
C24 |
H12 |
109.4 |
109.5 |
| H10 |
C24 |
H11 |
109.5 |
109.5 |
| H10 |
C24 |
H12 |
109.5 |
109.5 |
| H11 |
C24 |
H12 |
109.5 |
109.4 |
Torsion Angles for EBE
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| F25 |
C15 |
C16 |
H16 |
0.2 |
0.3 |
| C15 |
C16 |
C17 |
H15 |
181.0 |
180.3 |
| C16 |
C17 |
C18 |
H9 |
179.1 |
180.1 |
| C15 |
C14 |
C13 |
H8 |
307.4 |
6.4 |
| C15 |
C14 |
C19 |
H6 |
180.2 |
180.0 |
| C17 |
C18 |
C19 |
H6 |
180.3 |
180.0 |
| C13 |
C14 |
C19 |
H6 |
359.0 |
0.0 |
| C14 |
C13 |
C20 |
O21 |
27.3 |
120.0 |
| C20 |
C13 |
C14 |
H8 |
116.8 |
120.0 |
| C18 |
C19 |
C14 |
H6 |
180.0 |
180.3 |
| C14 |
C13 |
C20 |
H8 |
243.1 |
240.0 |
| C13 |
C3 |
C4 |
H1 |
0.5 |
0.3 |
| C13 |
C3 |
C2 |
H4 |
359.5 |
0.0 |
| C14 |
C19 |
C18 |
H6 |
180.0 |
179.7 |
| N22 |
C20 |
C13 |
H8 |
324.7 |
59.9 |
| O21 |
C20 |
C13 |
H8 |
144.2 |
240.0 |
| C3 |
C4 |
C5 |
C6 |
0.0 |
0.0 |
| C5 |
C4 |
C3 |
H1 |
180.0 |
179.7 |
| C3 |
C4 |
C5 |
H2 |
180.1 |
179.9 |
| C4 |
C3 |
C2 |
C1 |
0.1 |
360.0 |
| C4 |
C3 |
C2 |
H4 |
180.2 |
180.0 |
| C5 |
C4 |
C3 |
C2 |
359.9 |
0.0 |
| C3 |
C4 |
C5 |
H1 |
180.0 |
180.3 |
| C4 |
C5 |
C6 |
C1 |
0.0 |
359.9 |
| C4 |
C5 |
C6 |
C7 |
179.9 |
180.0 |
| C6 |
C5 |
C4 |
H2 |
180.0 |
180.1 |
| C2 |
C3 |
C4 |
H1 |
179.9 |
180.3 |
| C6 |
C1 |
C2 |
C3 |
359.9 |
360.0 |
| C1 |
C2 |
C3 |
H4 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
H5 |
179.9 |
180.0 |
| C6 |
C5 |
C4 |
C3 |
0.0 |
0.0 |
| C6 |
C5 |
C4 |
H1 |
180.1 |
179.7 |
| C4 |
C5 |
C6 |
H2 |
180.0 |
179.9 |
| C5 |
C6 |
C1 |
C2 |
0.0 |
0.1 |
| C7 |
C6 |
C5 |
C1 |
179.9 |
180.1 |
| C5 |
C6 |
C1 |
H5 |
180.1 |
180.0 |
| C5 |
C6 |
C7 |
C12 |
170.3 |
180.0 |
| C3 |
C2 |
C1 |
H4 |
180.0 |
180.0 |
| C7 |
C6 |
C1 |
C2 |
180.1 |
179.9 |
| C6 |
C1 |
C2 |
H5 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
C6 |
359.9 |
360.0 |
| C5 |
C6 |
C1 |
C7 |
179.9 |
180.1 |
| C1 |
C6 |
C5 |
H2 |
180.0 |
180.0 |
| C6 |
C1 |
C2 |
H4 |
179.9 |
180.0 |
| C2 |
C1 |
C6 |
H5 |
180.0 |
180.0 |
| C1 |
C6 |
C7 |
C12 |
350.2 |
0.1 |
| C5 |
C6 |
C7 |
C1 |
180.1 |
179.9 |
| C7 |
C6 |
C5 |
H2 |
359.9 |
0.1 |
| C7 |
C6 |
C1 |
H5 |
0.2 |
359.9 |
| C8 |
C7 |
C6 |
C12 |
180.1 |
180.3 |
| C6 |
C7 |
C12 |
N11 |
179.8 |
180.0 |
| C6 |
C7 |
C12 |
H7 |
359.8 |
360.0 |
| C8 |
C7 |
C6 |
C1 |
170.3 |
180.3 |
| C6 |
C7 |
C8 |
C12 |
179.9 |
179.7 |
| C8 |
C7 |
C12 |
N11 |
359.7 |
359.7 |
| C8 |
C7 |
C12 |
H7 |
179.7 |
179.7 |
| N9 |
C8 |
C7 |
C12 |
0.2 |
0.3 |
| C8 |
N9 |
C10 |
N11 |
359.4 |
359.7 |
| C8 |
N9 |
C10 |
C24 |
180.5 |
180.0 |
| C12 |
C7 |
C6 |
C1 |
350.2 |
0.1 |
| C10 |
N11 |
C12 |
C7 |
359.9 |
360.0 |
| N11 |
C12 |
C7 |
H7 |
180.0 |
180.0 |
| C10 |
N9 |
C8 |
H3 |
180.3 |
180.1 |
| N9 |
C10 |
N11 |
C12 |
0.5 |
0.3 |
| C24 |
C10 |
N9 |
N11 |
181.1 |
180.3 |
| N9 |
C10 |
C24 |
H10 |
0.0 |
269.7 |
| N9 |
C10 |
C24 |
H11 |
120.0 |
29.7 |
| N9 |
C10 |
C24 |
H12 |
240.0 |
149.7 |
| C7 |
C12 |
N11 |
H7 |
180.0 |
180.0 |
| C24 |
C10 |
N11 |
C12 |
179.4 |
180.0 |
| C7 |
C12 |
N11 |
C10 |
359.9 |
360.0 |
| N9 |
C10 |
N11 |
C24 |
181.1 |
180.3 |
| C10 |
N11 |
C12 |
H7 |
179.9 |
180.0 |
| N11 |
C10 |
C24 |
H10 |
181.1 |
90.0 |
| N11 |
C10 |
C24 |
H11 |
301.1 |
210.0 |
| N11 |
C10 |
C24 |
H12 |
61.1 |
330.0 |
| N9 |
C10 |
C24 |
N11 |
178.9 |
179.7 |
| H10 |
C24 |
C10 |
H11 |
240.0 |
240.0 |
| H10 |
C24 |
C10 |
H12 |
120.0 |
120.1 |
| H11 |
C24 |
C10 |
H12 |
240.0 |
240.0 |
| C5 |
C4 |
H1 |
C3 |
180.0 |
180.3 |
| H1 |
C4 |
C3 |
C2 |
179.9 |
180.3 |
| H1 |
C4 |
C5 |
C6 |
180.1 |
179.7 |
| H1 |
C4 |
C5 |
H2 |
0.1 |
359.7 |
| H2 |
C5 |
C4 |
C3 |
180.1 |
179.9 |
| C4 |
C5 |
H2 |
C6 |
180.0 |
180.1 |
| H2 |
C5 |
C4 |
H1 |
0.1 |
359.7 |
| H2 |
C5 |
C6 |
C1 |
180.0 |
180.0 |
| H2 |
C5 |
C6 |
C7 |
359.9 |
0.1 |
| H3 |
C8 |
C7 |
C12 |
180.2 |
180.2 |
| H3 |
C8 |
N9 |
C10 |
180.3 |
180.1 |
| C3 |
C2 |
H4 |
C1 |
180.0 |
180.0 |
| H4 |
C2 |
C1 |
H5 |
359.8 |
360.0 |
| C6 |
C1 |
H5 |
C2 |
180.0 |
180.0 |
| H5 |
C1 |
C2 |
H4 |
359.8 |
360.0 |
| C7 |
C12 |
H7 |
N11 |
180.0 |
180.0 |
| C14 |
C13 |
H8 |
C20 |
117.9 |
120.0 |
| H8 |
C13 |
C20 |
O21 |
144.2 |
240.0 |
| H9 |
C18 |
C19 |
H6 |
0.3 |
359.9 |
| H10 |
C24 |
C10 |
N11 |
181.1 |
90.0 |
| C10 |
C24 |
H10 |
H11 |
120.0 |
120.0 |
| C10 |
C24 |
H10 |
H12 |
240.0 |
240.0 |
| H11 |
C24 |
H10 |
H12 |
120.0 |
120.0 |
| H11 |
C24 |
C10 |
N11 |
301.1 |
210.0 |
| C10 |
C24 |
H11 |
H10 |
240.0 |
240.0 |
| C10 |
C24 |
H11 |
H12 |
120.0 |
120.0 |
| H10 |
C24 |
H11 |
H12 |
240.0 |
240.0 |
| H12 |
C24 |
C10 |
N11 |
61.1 |
330.0 |
| C10 |
C24 |
H12 |
H10 |
120.0 |
120.1 |
| C10 |
C24 |
H12 |
H11 |
240.0 |
240.0 |
| H10 |
C24 |
H12 |
H11 |
120.0 |
120.0 |
| H13 |
N22 |
O23 |
H14 |
179.6 |
360.0 |
| H14 |
O23 |
N22 |
H13 |
179.6 |
360.0 |
| H15 |
C17 |
C18 |
H9 |
359.1 |
0.0 |
| H16 |
C16 |
C17 |
H15 |
1.0 |
0.1 |