PDB Chemical Component EB4

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for EB4

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O6	C6	1.362	1.360
O6	HO6	0.950	0.967
O4	HO4	0.950	0.967
O5	C5	1.363	1.360
O5	HO5	0.949	0.967
N1	C22	1.461	1.466
N1	HN1	1.000	0.970
C5	C2	1.387	1.392
C5	C8	1.392	1.385
C4	O4	1.361	1.360
C4	C1	1.384	1.392
C1	O1	1.364	1.358
C2	C17	1.390	1.400
C6	C3	1.386	1.392
C8	C11	1.390	1.385
C8	H8	1.080	1.080
N2	C23	1.465	1.465
N2	HN2	1.000	0.970
C9	C6	1.392	1.384
C9	C12	1.393	1.385
C9	H9	1.080	1.081
C10	C7	1.391	1.385
C10	C13	1.393	1.377
C10	H10	1.080	1.079
O3	HO3	0.950	0.967
N3	C21	1.334	1.348
N3	C24	1.461	1.465
N3	HN3	1.000	0.970
C16	C1	1.389	1.399
C16	C19	1.502	1.475
C7	C4	1.390	1.384
C7	H7	1.080	1.080
C3	O3	1.364	1.358
C3	C18	1.390	1.400
C11	C14	1.392	1.378
C11	H11	1.080	1.080
O1	HO1	0.950	0.968
O2	C2	1.362	1.356
O2	HO2	0.950	0.967
C12	C15	1.394	1.377
C12	H12	1.080	1.080
C15	C18	1.390	1.399
C15	H15	1.080	1.080
C14	H14	1.080	1.080
C13	C16	1.392	1.399
C13	H13	1.080	1.080
O7	C19	1.221	1.216
C19	N1	1.336	1.348
C22	C25	1.510	1.507
C22	C28	1.523	1.529
C22	H22	1.100	1.090
C25	O15	1.466	1.343
O10	C25	1.223	1.207
O15	C30	1.441	1.452
C30	C24	1.535	1.530
C30	H30	1.100	1.090
C30	H30A	1.100	1.090
C24	H24	1.100	1.091
C21	O9	1.222	1.216
C18	C21	1.501	1.475
C27	C24	1.513	1.507
C27	O14	1.464	1.342
O12	C27	1.220	1.209
C28	H28	1.100	1.090
C28	H28A	1.100	1.090
O13	C28	1.423	1.452
O13	C26	1.458	1.343
C26	C23	1.522	1.507
O11	C26	1.220	1.208
C23	C29	1.548	1.530
C23	H23	1.099	1.091
C29	O14	1.444	1.452
C29	H29	1.100	1.090
C29	H29A	1.101	1.090
C20	N2	1.336	1.347
O8	C20	1.220	1.216
C17	C14	1.391	1.398
C17	C20	1.502	1.476

Bond Angles for EB4

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C6	O6	HO6	109.5	114.0
O6	C6	C3	120.1	120.0
C4	O4	HO4	109.5	114.0
C5	O5	HO5	109.5	114.0
O5	C5	C2	120.0	120.0
O5	C5	C8	120.0	120.0
C22	N1	HN1	117.8	120.0
C19	N1	C22	124.4	120.0
N1	C22	C25	109.5	109.4
N1	C22	C28	108.8	109.5
N1	C22	H22	109.7	109.5
C19	N1	HN1	117.8	120.0
C2	C5	C8	120.0	120.0
C5	C2	C17	120.1	119.6
C5	C8	C11	119.9	120.3
C5	C8	H8	120.1	119.8
C4	C1	O1	118.9	120.1
C16	C1	O1	120.8	120.2
C1	O1	HO1	109.5	114.0
O2	C2	C17	120.5	120.2
C2	C17	C14	119.9	119.7
C2	C17	C20	120.3	120.2
C9	C6	C3	119.8	120.0
C6	C3	O3	119.3	120.2
C6	C3	C18	120.4	119.7
C11	C8	H8	120.0	119.9
C8	C11	C14	120.0	120.4
C8	C11	H11	120.0	119.8
C23	N2	HN2	118.5	120.0
N2	C23	C26	109.1	109.5
N2	C23	C29	108.9	109.5
N2	C23	H23	112.4	109.5
C20	N2	HN2	118.5	120.0
C12	C9	H9	120.0	119.8
C9	C12	C15	120.2	120.3
C9	C12	H12	119.9	119.8
C7	C10	C13	119.8	120.3
C7	C10	H10	120.1	119.8
C10	C7	H7	120.1	119.8
C13	C10	H10	120.1	119.8
C10	C13	C16	120.2	120.0
C10	C13	H13	119.9	120.0
C3	O3	HO3	109.5	114.0
C24	N3	C21	122.0	120.0
C21	N3	HN3	119.0	120.0
N3	C21	O9	122.4	120.0
C24	N3	HN3	119.0	120.0
N3	C24	C30	107.9	109.5
N3	C24	H24	112.4	109.4
C13	C16	C19	120.6	120.2
C16	C19	O7	118.9	120.0
C3	C18	C15	120.1	119.6
C3	C18	C21	118.8	120.2
C14	C11	H11	120.0	119.8
C11	C14	H14	120.0	120.0
C15	C12	H12	119.9	119.8
C12	C15	C18	119.6	120.0
C12	C15	H15	120.2	120.0
C18	C15	H15	120.2	120.0
C15	C18	C21	121.1	120.2
C17	C14	H14	120.0	120.0
C25	C22	C28	108.8	109.5
C25	C22	H22	109.7	109.5
C22	C25	O15	123.0	120.0
C28	C22	H22	110.4	109.5
C22	C28	H28	107.4	109.5
C22	C28	H28A	105.8	109.4
O10	C25	O15	117.5	120.0
C25	O15	C30	128.1	117.0
O15	C30	C24	116.3	109.5
O15	C30	H30	107.2	109.4
O15	C30	H30A	105.7	109.4
C24	C30	H30	107.3	109.5
C24	C30	H30A	105.7	109.5
C30	C24	H24	107.5	109.5
H30	C30	H30A	115.0	109.5
C27	C24	H24	106.6	109.5
C18	C21	O9	118.6	120.0
O12	C27	O14	117.9	120.0
C27	O14	C29	126.2	117.0
H28	C28	H28A	114.7	109.4
O13	C28	H28	107.4	109.5
O13	C28	H28A	105.8	109.5
O13	C26	C23	125.1	120.0
O11	C26	C23	119.4	120.0
C26	C23	C29	115.6	109.5
C26	C23	H23	105.3	109.4
C29	C23	H23	105.5	109.5
C23	C29	O14	117.3	109.4
C23	C29	H29	106.9	109.5
C23	C29	H29A	105.1	109.4
O14	C29	H29	106.9	109.5
O14	C29	H29A	105.1	109.5
H29	C29	H29A	115.8	109.4

Torsion Angles for EB4

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C9	C6	O6	C3	180.1	180.4
O6	C6	C3	O3	360.0	0.1
O6	C6	C3	C18	180.1	180.0
HO6	O6	C6	C3	321.5	89.9
C2	C5	O5	C8	180.1	180.3
O5	C5	C2	C17	180.3	180.0
O5	C5	C8	C11	180.0	180.0
O5	C5	C8	H8	0.0	0.0
HO5	O5	C5	C2	257.7	90.0
HO5	O5	C5	C8	77.5	269.7
C19	N1	C22	HN1	180.0	180.0
C25	C22	N1	C28	118.7	120.0
C25	C22	N1	H22	239.6	240.0
N1	C22	C25	O15	209.5	356.1
C28	C22	N1	H22	120.9	120.0
N1	C22	C28	H28	83.2	174.6
N1	C22	C28	H28A	206.1	294.5
C19	N1	HN1	C22	180.0	180.0
HN1	N1	C22	C25	74.7	95.0
HN1	N1	C22	C28	316.0	335.0
HN1	N1	C22	H22	195.1	215.0
C2	C5	O5	HO5	257.7	90.0
O5	C5	C2	C8	179.9	179.7
C2	C5	C8	C11	359.9	359.7
C2	C5	C8	H8	179.9	179.8
O2	C2	C5	C17	179.6	180.0
C5	C2	C17	C14	359.3	0.0
C5	C2	C17	C20	180.7	180.0
C8	C5	O5	HO5	77.5	269.7
O5	C5	C8	C2	180.1	180.3
C8	C5	C2	C17	0.4	0.2
C11	C8	C5	H8	180.0	180.0
C5	C8	C11	C14	0.2	0.0
C5	C8	C11	H11	180.2	179.9
C1	C4	O4	HO4	231.6	90.1
C16	C1	C4	O1	180.4	180.0
C4	C1	O1	HO1	105.0	90.1
C17	C2	C5	C8	0.4	0.2
C2	C17	C14	H14	180.8	180.0
C3	C6	O6	HO6	321.5	89.9
C6	C3	O3	HO3	146.2	89.9
C6	C3	C18	C15	359.8	360.0
C6	C3	C18	C21	180.3	180.1
C5	C8	C11	H8	180.0	180.0
C14	C11	C8	H11	180.0	180.1
C8	C11	C14	H14	179.5	180.0
C5	C8	H8	C11	180.0	180.0
H8	C8	C11	C14	180.2	180.0
H8	C8	C11	H11	0.2	359.9
C20	N2	C23	HN2	180.0	180.1
O13	C26	C23	N2	228.6	355.4
O11	C26	C23	N2	48.8	175.3
C26	C23	N2	C29	127.0	120.0
C26	C23	N2	H23	243.6	240.0
C29	C23	N2	H23	116.6	120.0
N2	C23	C29	O14	19.1	53.3
N2	C23	C29	H29	139.1	173.3
N2	C23	C29	H29A	262.8	293.3
HN2	N2	C23	C26	99.7	95.0
HN2	N2	C23	C29	332.6	335.0
HN2	N2	C23	H23	216.1	214.9
C9	C6	O6	HO6	141.5	270.3
O6	C6	C9	C3	179.9	179.6
C9	C6	C3	O3	179.9	179.7
C9	C6	C3	C18	0.1	359.7
C12	C9	C6	C3	0.1	0.4
C15	C12	C9	H12	180.0	179.9
C9	C12	C15	C18	359.8	359.7
C9	C12	C15	H15	179.9	179.9
H9	C9	C6	C3	180.1	180.3
H9	C9	C12	C15	180.0	180.0
H9	C9	C12	H12	360.0	0.1
C13	C10	C7	H10	180.0	180.1
C7	C10	C13	C16	359.8	0.2
C7	C10	C13	H13	179.9	180.0
C7	C10	C13	H10	180.0	179.9
C13	C10	C7	H7	180.0	180.0
C10	C13	C16	C19	179.9	179.8
C7	C10	H10	C13	180.0	180.1
H10	C10	C7	H7	360.0	360.0
H10	C10	C13	C16	179.8	180.3
H10	C10	C13	H13	359.9	0.1
C24	N3	C21	HN3	180.0	180.0
C21	N3	C24	C30	154.9	155.0
C21	N3	C24	H24	36.5	35.0
C3	C18	C21	N3	276.3	180.0
C15	C18	C21	N3	96.9	0.0
C18	C21	N3	O9	178.9	180.0
C21	N3	C24	HN3	180.0	180.0
C24	N3	C21	O9	359.2	360.0
O15	C30	C24	N3	26.6	53.8
N3	C24	C30	H30	266.6	293.9
N3	C24	C30	H30A	143.5	173.8
C30	C24	N3	H24	118.4	120.0
C27	C24	N3	H24	242.1	240.0
C24	N3	HN3	C21	180.0	180.0
HN3	N3	C21	O9	179.2	180.0
HN3	N3	C24	C30	334.9	335.0
HN3	N3	C24	H24	216.5	215.0
C4	C1	C16	O1	179.5	180.0
C16	C1	O1	HO1	284.6	270.0
C16	C19	N1	C22	178.6	180.0
C16	C19	N1	HN1	358.6	0.0
C19	C16	C1	O1	0.5	0.0
C7	C4	O4	HO4	51.6	269.8
C7	C4	C1	O1	179.9	180.3
H7	C7	C10	C13	180.0	180.0
H7	C7	C10	H10	360.0	360.0
C6	C3	O3	C18	180.2	179.9
C6	C3	C18	O3	179.8	180.1
C18	C3	O3	HO3	326.1	270.0
C12	C15	C18	C3	0.3	0.3
C3	C18	C15	H15	180.3	180.1
C15	C18	C3	C21	179.4	179.9
C3	C18	C21	O9	95.3	359.9
C2	C17	C14	C11	0.8	359.7
C14	C11	C8	H8	180.2	180.0
C8	C11	C14	H11	180.0	179.9
C17	C14	C11	H14	180.0	180.3
H11	C11	C8	H8	0.2	359.9
C8	C11	H11	C14	180.0	180.1
H11	C11	C14	H14	359.5	0.1
C5	C2	O2	C17	180.4	180.0
O2	C2	C17	C14	179.6	180.0
O2	C2	C17	C20	1.0	360.0
HO2	O2	C2	C17	257.8	270.0
C15	C12	C9	H9	180.0	180.0
C9	C12	C15	H12	180.0	180.1
C3	C18	C15	C12	0.3	0.3
C18	C15	C12	H15	180.0	179.8
C12	C15	C18	C21	179.7	180.2
H12	C12	C9	H9	360.0	0.1
C9	C12	H12	C15	180.0	179.9
H12	C12	C15	C18	179.8	179.7
H12	C12	C15	H15	359.9	359.9
C3	C18	C15	C21	180.6	180.1
C18	C15	C12	H12	179.8	179.7
C12	C15	C18	H15	180.0	180.2
C15	C18	C21	O9	275.9	180.0
H15	C15	C12	H12	359.9	359.9
C12	C15	H15	C18	180.0	179.8
H15	C15	C18	C21	359.7	0.0
H14	C14	C11	H11	359.5	0.1
C16	C13	C10	H10	179.8	180.3
C10	C13	C16	H13	180.0	179.8
C13	C16	C19	O7	312.0	180.0
H13	C13	C10	H10	359.9	0.1
C10	C13	H13	C16	180.0	180.2
H13	C13	C16	C19	359.8	360.0
O7	C19	N1	C22	358.5	360.0
O7	C19	N1	HN1	178.5	180.0
C22	N1	C19	HN1	180.0	180.0
C19	N1	C22	C25	254.7	275.0
C19	N1	C22	C28	136.0	155.0
C19	N1	C22	H22	15.2	35.0
C25	C22	N1	HN1	74.7	95.0
N1	C22	C25	C28	241.3	240.0
N1	C22	C25	H22	120.4	120.0
C28	C22	C25	H22	239.1	240.0
C25	C22	C28	H28	324.0	54.6
C25	C22	C28	H28A	86.9	174.5
O10	C25	C22	O15	181.1	179.9
C22	C25	O15	C30	73.4	179.8
C28	C22	N1	HN1	316.0	335.0
N1	C22	C28	C25	119.2	120.0
N1	C22	C28	H22	239.6	240.0
C25	C22	C28	H22	120.4	120.0
C28	C22	C25	O15	328.2	116.0
H28	C28	C22	H28A	237.0	240.1
O13	C28	C22	H28	240.0	240.0
O13	C28	C22	H28A	117.0	120.0
H22	C22	N1	HN1	195.1	215.0
N1	C22	H22	C25	239.7	240.0
N1	C22	H22	C28	119.9	120.0
C25	C22	H22	C28	240.1	240.0
H22	C22	C25	O15	89.1	236.1
H22	C22	C28	H28	203.6	294.6
H22	C22	C28	H28A	326.5	54.5
O15	C25	C22	C28	328.2	116.0
O15	C25	C22	H22	89.1	236.1
C25	O15	C30	C24	46.9	118.4
C25	O15	C30	H30	166.9	238.4
C25	O15	C30	H30A	290.0	358.4
O10	C25	C22	C28	149.3	296.0
O10	C25	C22	H22	270.2	56.0
C22	C25	O10	O15	178.9	180.1
O10	C25	O15	C30	252.3	359.8
N3	C24	C30	O15	26.6	53.8
C24	C30	O15	H30	240.0	240.0
C24	C30	O15	H30A	116.9	120.0
O15	C30	C24	H24	148.1	173.8
H30	C30	O15	H30A	236.9	240.0
C30	C24	N3	C21	154.9	155.0
C30	C24	N3	HN3	334.9	335.0
N3	C24	C30	H24	238.5	240.0
O15	C30	C24	H30	120.0	120.0
O15	C30	C24	H30A	243.1	240.0
H30	C30	C24	H30A	123.2	120.0
C27	C24	C30	H24	117.7	120.0
O15	C30	H30	C24	234.4	240.0
O15	C30	H30	H30A	117.2	120.0
C24	C30	H30	H30A	242.7	240.0
H30	C30	C24	H24	28.2	53.8
O15	C30	H30A	C24	123.8	120.0
O15	C30	H30A	H30	241.9	240.1
C24	C30	H30A	H30	118.1	120.0
H30A	C30	C24	H24	265.0	293.8
H24	C24	N3	C21	36.5	35.0
H24	C24	N3	HN3	216.5	215.0
N3	C24	H24	C30	118.7	120.0
H24	C24	C30	H30	28.2	53.8
H24	C24	C30	H30A	265.0	293.8
O9	C21	N3	HN3	179.2	180.0
C18	C21	N3	HN3	358.1	360.0
N3	C21	C18	O9	181.0	180.0
C3	C18	C21	C15	179.4	179.9
C21	C18	C15	H15	359.7	0.0
C27	C24	N3	HN3	98.6	95.0
N3	C24	C27	H24	121.5	120.0
C27	C24	C30	H30	145.9	173.9
C27	C24	C30	H30A	22.7	53.8
C30	C24	C27	H24	241.7	240.0
O14	C27	C24	H24	53.0	236.5
C23	C29	O14	C27	53.0	119.1
C27	O14	C29	H29	293.0	359.1
C27	O14	C29	H29A	169.3	239.1
O12	C27	C24	H24	234.5	56.5
O12	C27	O14	C29	297.1	0.2
H28	C28	C22	H22	203.6	294.6
C22	C28	H28	H28A	117.3	119.9
O13	C28	H28	H28A	242.7	240.0
H28A	C28	C22	H22	326.5	54.5
C22	C28	H28A	H28	241.8	240.1
O13	C28	H28A	H28	118.2	120.0
O13	C28	C22	H22	83.5	174.5
C22	C28	O13	H28	120.0	120.0
C22	C28	O13	H28A	243.0	240.0
H28	C28	O13	H28A	123.0	120.0
N2	C23	C26	O13	228.6	355.4
C26	O13	C28	H28	333.0	359.5
C26	O13	C28	H28A	210.0	239.5
O11	C26	O13	C23	179.8	180.0
O13	C26	C23	C29	351.7	115.4
O13	C26	C23	H23	107.7	235.4
C26	C23	N2	HN2	99.7	95.0
N2	C23	C26	C29	236.8	240.0
N2	C23	C26	H23	120.9	120.0
C29	C23	C26	H23	244.0	240.0
C26	C23	C29	O14	255.9	293.2
C26	C23	C29	H29	15.9	53.3
C26	C23	C29	H29A	139.5	173.2
N2	C23	C26	O11	48.8	175.3
O13	C26	O11	C23	180.2	180.0
O11	C26	C23	C29	171.9	295.4
O11	C26	C23	H23	287.9	55.4
C29	C23	N2	HN2	332.6	335.0
N2	C23	C29	C26	123.3	120.0
N2	C23	C29	H23	239.1	240.0
C27	O14	C29	C23	53.0	119.1
C26	C23	C29	H23	115.9	120.0
O14	C29	C23	H29	240.0	239.9
O14	C29	C23	H29A	116.3	120.0
H29	C29	C23	H29A	236.3	240.1
H23	C23	N2	HN2	216.1	214.9
N2	C23	H23	C26	241.3	240.0
N2	C23	H23	C29	118.6	120.0
C26	C23	H23	C29	237.3	240.0
H23	C23	C29	O14	140.0	173.3
H23	C23	C29	H29	260.0	293.3
H23	C23	C29	H29A	23.7	53.3
O14	C29	C23	H23	140.0	173.3
C23	C29	O14	H29	120.0	120.0
C23	C29	O14	H29A	243.7	240.0
H29	C29	O14	H29A	123.7	120.0
H29	C29	C23	H23	260.0	293.3
C23	C29	H29	O14	233.6	240.0
C23	C29	H29	H29A	116.8	119.9
O14	C29	H29	H29A	243.2	239.9
H29A	C29	C23	H23	23.7	53.3
C23	C29	H29A	O14	124.4	120.0
C23	C29	H29A	H29	242.2	240.1
O14	C29	H29A	H29	117.8	120.1
C2	C17	C20	N2	298.7	180.0
C23	N2	C20	HN2	180.0	179.9
C20	N2	C23	H23	36.0	35.0
C2	C17	C20	O8	118.1	360.0
O8	C20	N2	HN2	179.3	180.1
C2	C17	C14	C20	181.4	180.0
C17	C14	C11	H11	179.5	180.3
C11	C14	C17	H14	180.0	179.7
C2	C17	C20	C14	178.6	180.0
C17	C20	N2	HN2	358.6	0.0
C20	C17	C14	H14	359.3	0.0