Atom Nomenclature for E9W

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for E9W

Atom Name (V3) Atom Name (V2)
C2 C1
C4 C2
C5 C3
C6 C4
N9 N1
C8 C5
CAA C6
CAB C7
CAC C8
CAE C9
CAG C10
CAK C11
CAM C12
CAN C13
CAR C14
CAT C15
N1 N2
N3 N3
N6 N4
N7 N5
NAD N6
NAO N7
NAP N8
NAQ N9
OAF O1
OAL O2
OAS O3
OAU O4
SAH S1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H17 H17
H18 H18
H16 H16