PDB Chemical Component E9D

Ideal Model

Chemical Description

Name Heteroaryldihydropyrimidine tetramethylrodamine
Synonyms HAP-TAMRA
Formula C51 H48 Cl F N8 O7
Formal charge 0
Molecular weight 939.428 g/mol
Component type NON-POLYMER

Chemical features

Atom count 116
Chiral atom count 0
Bond count 123
Aromatic bond count 30

Chemical Identifiers

Systematic name (ACDLabs) (2P)-4-{[4-(4-{[(2M,6M)-6-(2-chloro-4-fluorophenyl)-5-(methoxycarbonyl)-2-(pyridin-2-yl)pyrimidin-4-yl]methyl}piperazin-1-yl)-4-oxobutyl]carbamoyl}-2-{[4aP,9(9a)P]-6-(dimethylamino)-3-(dimethyliminio)-3H-xanthen-9-yl}benzoate
Systematic name (OpenEye OEToolkits) 4-[[4-[4-[[6-(2-chloranyl-4-fluoranyl-phenyl)-5-methoxycarbonyl-2-pyridin-2-yl-pyrimidin-4-yl]methyl]piperazin-1-yl]-4-oxidanylidene-butyl]carbamoyl]-2-[3-(dimethylamino)-6-dimethylazaniumylidene-xanthen-9-yl]benzoate

Chemical Descriptors

Stereo SMILES (CACTVS) COC(=O)c1c(CN2CCN(CC2)C(=O)CCCNC(=O)c3ccc(C([O-])=O)c(c3)C4=C5C=CC(C=C5Oc6cc(ccc46)N(C)C)=[N+](C)C)nc(nc1c7ccc(F)cc7Cl)c8ccccn8
SMILES (CACTVS) COC(=O)c1c(CN2CCN(CC2)C(=O)CCCNC(=O)c3ccc(C([O-])=O)c(c3)C4=C5C=CC(C=C5Oc6cc(ccc46)N(C)C)=[N+](C)C)nc(nc1c7ccc(F)cc7Cl)c8ccccn8
Stereo SMILES (OpenEye) CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4cc(ccc4C(=O)[O-])C(=O)NCCCC(=O)N5CCN(CC5)Cc6c(c(nc(n6)c7ccccn7)c8ccc(cc8Cl)F)C(=O)OC
InChI descriptor InChI=1S/C51H48ClFN8O7/c1-58(2)32-13-17-36-42(27-32)68-43-28-33(59(3)4)14-18-37(43)45(36)38-25-30(11-15-34(38)50(64)65)49(63)55-20-8-10-44(62)61-23-21-60(22-24-61)29-41-46(51(66)67-5)47(35-16-12-31(53)26-39(35)52)57-48(56-41)40-9-6-7-19-54-40/h6-7,9,11-19,25-28H,8,10,20-24,29H2,1-5H3,(H-,55,63,64,65)
InChIKey descriptor PZTNESDVJNEZKJ-UHFFFAOYSA-N

Status Information

Last modified 2022-04-05
Created 2017-12-13
Release status REL
Model PDB code 6BVF
Processing site RCSB