PDB Chemical Component E9A
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for E9A
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C17 |
C16 |
1.385 |
|
C17 |
C18 |
1.392 |
|
C16 |
C15 |
1.387 |
|
C18 |
C19 |
1.387 |
|
C11 |
N |
1.456 |
|
C11 |
C10 |
1.514 |
|
C15 |
N |
1.394 |
|
C15 |
C14 |
1.382 |
|
N |
C12 |
1.343 |
|
C19 |
C14 |
1.389 |
|
C14 |
N1 |
1.400 |
|
C12 |
N1 |
1.343 |
|
C12 |
C20 |
1.537 |
|
N1 |
C13 |
1.456 |
|
C20 |
O2 |
1.431 |
|
C10 |
O1 |
1.196 |
|
C10 |
O |
1.352 |
|
C26 |
C25 |
1.384 |
|
C26 |
C21 |
1.389 |
|
O2 |
C21 |
1.379 |
|
C6 |
C5 |
1.535 |
|
O |
C8 |
1.471 |
|
C25 |
C24 |
1.378 |
|
C21 |
C22 |
1.387 |
|
C5 |
C7 |
1.526 |
|
C5 |
C4 |
1.541 |
|
C8 |
C4 |
1.529 |
|
C8 |
C9 |
1.519 |
|
C24 |
C23 |
1.378 |
|
C4 |
C3 |
1.528 |
|
C22 |
C23 |
1.385 |
|
C9 |
C1 |
1.531 |
|
C3 |
C2 |
1.520 |
|
C |
C1 |
1.522 |
|
C1 |
C2 |
1.516 |
|
C8 |
H16 |
1.100 |
|
C7 |
H14 |
1.100 |
|
C7 |
H15 |
1.100 |
|
C7 |
H13 |
1.100 |
|
C6 |
H12 |
1.100 |
|
C6 |
H11 |
1.100 |
|
C6 |
H10 |
1.100 |
|
C5 |
H9 |
1.100 |
|
C1 |
H3 |
1.100 |
|
C2 |
H4 |
1.100 |
|
C2 |
H5 |
1.100 |
|
C3 |
H7 |
1.100 |
|
C3 |
H6 |
1.100 |
|
C4 |
H8 |
1.100 |
|
C |
H2 |
1.100 |
|
C |
H1 |
1.100 |
|
C |
H |
1.100 |
|
C11 |
H20 |
1.100 |
|
C11 |
H19 |
1.100 |
|
C13 |
H23 |
1.100 |
|
C13 |
H22 |
1.100 |
|
C13 |
H21 |
1.101 |
|
C16 |
H24 |
1.080 |
|
C17 |
H25 |
1.080 |
|
C18 |
H26 |
1.080 |
|
C19 |
H27 |
1.080 |
|
C20 |
H29 |
1.100 |
|
C20 |
H28 |
1.100 |
|
C22 |
H30 |
1.080 |
|
C23 |
H31 |
1.080 |
|
C24 |
H32 |
1.080 |
|
C25 |
H33 |
1.080 |
|
C26 |
H34 |
1.080 |
|
C9 |
H18 |
1.100 |
|
C9 |
H17 |
1.100 |
|
Bond Angles for E9A
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C17 |
C16 |
H24 |
121.0 |
|
C17 |
C18 |
C19 |
120.9 |
|
C18 |
C17 |
H25 |
119.5 |
|
C17 |
C18 |
H26 |
119.5 |
|
C19 |
C18 |
H26 |
119.5 |
|
C18 |
C19 |
H27 |
121.1 |
|
C11 |
N |
C12 |
124.2 |
|
C11 |
C10 |
O1 |
121.2 |
|
N |
C12 |
C20 |
123.0 |
|
C12 |
N1 |
C13 |
127.0 |
|
C12 |
C20 |
O2 |
103.7 |
|
C12 |
C20 |
H29 |
110.9 |
|
C12 |
C20 |
H28 |
110.9 |
|
N1 |
C13 |
H23 |
109.5 |
|
N1 |
C13 |
H22 |
109.4 |
|
N1 |
C13 |
H21 |
109.4 |
|
C20 |
O2 |
C21 |
119.9 |
|
O2 |
C20 |
H29 |
110.9 |
|
O2 |
C20 |
H28 |
110.9 |
|
C26 |
C25 |
H33 |
119.8 |
|
C6 |
C5 |
C4 |
110.6 |
|
C5 |
C6 |
H12 |
109.5 |
|
C5 |
C6 |
H11 |
109.5 |
|
C5 |
C6 |
H10 |
109.5 |
|
C6 |
C5 |
H9 |
107.6 |
|
O |
C8 |
C4 |
110.1 |
|
O |
C8 |
C9 |
107.8 |
|
O |
C8 |
H16 |
109.0 |
|
C25 |
C24 |
H32 |
120.1 |
|
C21 |
C22 |
C23 |
119.4 |
|
C21 |
C22 |
H30 |
120.3 |
|
C5 |
C7 |
H14 |
109.5 |
|
C5 |
C7 |
H15 |
109.4 |
|
C5 |
C7 |
H13 |
109.4 |
|
C8 |
C4 |
C5 |
114.7 |
|
C5 |
C4 |
C3 |
114.7 |
|
C4 |
C5 |
H9 |
107.4 |
|
C5 |
C4 |
H8 |
105.8 |
|
C4 |
C8 |
C9 |
113.1 |
|
C8 |
C4 |
C3 |
108.9 |
|
C4 |
C8 |
H16 |
108.3 |
|
C8 |
C4 |
H8 |
106.0 |
|
C8 |
C9 |
C1 |
113.8 |
|
C9 |
C8 |
H16 |
108.4 |
|
C8 |
C9 |
H18 |
108.4 |
|
C8 |
C9 |
H17 |
108.4 |
|
C24 |
C23 |
H31 |
119.7 |
|
C4 |
C3 |
H7 |
109.0 |
|
C4 |
C3 |
H6 |
109.0 |
|
C23 |
C22 |
H30 |
120.3 |
|
C22 |
C23 |
H31 |
119.7 |
|
C9 |
C1 |
H3 |
107.0 |
|
C3 |
C2 |
H4 |
109.0 |
|
C3 |
C2 |
H5 |
109.0 |
|
C |
C1 |
H3 |
107.2 |
|
C2 |
C1 |
H3 |
107.2 |
|
C1 |
C2 |
H4 |
109.0 |
|
C1 |
C2 |
H5 |
109.0 |
|
H14 |
C7 |
H15 |
109.5 |
|
H14 |
C7 |
H13 |
109.5 |
|
H15 |
C7 |
H13 |
109.5 |
|
H12 |
C6 |
H11 |
109.5 |
|
H12 |
C6 |
H10 |
109.5 |
|
H11 |
C6 |
H10 |
109.5 |
|
H4 |
C2 |
H5 |
109.5 |
|
H7 |
C3 |
H6 |
109.5 |
|
H2 |
C |
H1 |
109.5 |
|
H2 |
C |
H |
109.5 |
|
H1 |
C |
H |
109.5 |
|
H20 |
C11 |
H19 |
109.5 |
|
H23 |
C13 |
H22 |
109.5 |
|
H23 |
C13 |
H21 |
109.5 |
|
H22 |
C13 |
H21 |
109.5 |
|
H29 |
C20 |
H28 |
109.5 |
|
H18 |
C9 |
H17 |
109.5 |
|
Torsion Angles for E9A
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C18 |
C17 |
C16 |
H24 |
180.6 |
|
C19 |
C18 |
C17 |
H26 |
180.0 |
|
C17 |
C18 |
C19 |
H27 |
179.4 |
|
C19 |
C18 |
C17 |
H25 |
179.6 |
|
C17 |
C18 |
C19 |
H26 |
180.0 |
|
C11 |
N |
C12 |
C20 |
2.3 |
|
C10 |
C11 |
N |
C12 |
272.1 |
|
C15 |
N |
C12 |
C20 |
175.4 |
|
N |
C12 |
N1 |
C13 |
178.5 |
|
N |
C12 |
C20 |
O2 |
100.1 |
|
N |
C12 |
C20 |
H29 |
219.3 |
|
N |
C12 |
C20 |
H28 |
341.1 |
|
C14 |
N1 |
C13 |
H23 |
180.0 |
|
C14 |
N1 |
C13 |
H22 |
300.0 |
|
C14 |
N1 |
C13 |
H21 |
60.0 |
|
C12 |
N1 |
C13 |
H23 |
2.3 |
|
C12 |
N1 |
C13 |
H22 |
122.3 |
|
C12 |
N1 |
C13 |
H21 |
242.2 |
|
C20 |
C12 |
N1 |
C13 |
2.1 |
|
C12 |
C20 |
O2 |
C21 |
218.3 |
|
O2 |
C20 |
C12 |
H29 |
240.9 |
|
O2 |
C20 |
C12 |
H28 |
119.1 |
|
H29 |
C20 |
C12 |
H28 |
238.2 |
|
H23 |
C13 |
N1 |
H22 |
240.0 |
|
H23 |
C13 |
N1 |
H21 |
120.0 |
|
H22 |
C13 |
N1 |
H21 |
240.0 |
|
C12 |
C20 |
O2 |
H29 |
119.1 |
|
C12 |
C20 |
O2 |
H28 |
240.9 |
|
H29 |
C20 |
O2 |
H28 |
121.8 |
|
C10 |
O |
C8 |
C9 |
265.2 |
|
C10 |
O |
C8 |
H16 |
22.7 |
|
C26 |
C25 |
C24 |
H32 |
180.3 |
|
C20 |
O2 |
C21 |
C26 |
1.5 |
|
C26 |
C21 |
C22 |
H30 |
180.8 |
|
C21 |
O2 |
C20 |
H29 |
99.2 |
|
C21 |
O2 |
C20 |
H28 |
337.4 |
|
O2 |
C21 |
C22 |
H30 |
2.9 |
|
C6 |
C5 |
C7 |
H14 |
180.0 |
|
C6 |
C5 |
C7 |
H15 |
300.0 |
|
C6 |
C5 |
C7 |
H13 |
60.0 |
|
C8 |
C4 |
C5 |
C6 |
261.7 |
|
C6 |
C5 |
C4 |
C3 |
134.5 |
|
C4 |
C5 |
C6 |
H9 |
117.1 |
|
C6 |
C5 |
C4 |
H8 |
18.1 |
|
H12 |
C6 |
C5 |
H11 |
240.0 |
|
H12 |
C6 |
C5 |
H10 |
120.0 |
|
H11 |
C6 |
C5 |
H10 |
240.0 |
|
O |
C8 |
C4 |
C5 |
348.3 |
|
C4 |
C8 |
O |
C9 |
236.2 |
|
O |
C8 |
C4 |
C3 |
118.3 |
|
C4 |
C8 |
O |
H16 |
118.7 |
|
O |
C8 |
C4 |
H8 |
231.9 |
|
O |
C8 |
C9 |
C1 |
186.9 |
|
C9 |
C8 |
O |
H16 |
242.5 |
|
O |
C8 |
C9 |
H18 |
307.5 |
|
O |
C8 |
C9 |
H17 |
66.3 |
|
C25 |
C24 |
C23 |
H31 |
179.6 |
|
C20 |
O2 |
C21 |
C22 |
179.3 |
|
C23 |
C22 |
C21 |
H30 |
180.0 |
|
C21 |
C22 |
C23 |
H31 |
179.8 |
|
C8 |
C4 |
C5 |
C7 |
138.1 |
|
H14 |
C7 |
C5 |
H15 |
240.0 |
|
H14 |
C7 |
C5 |
H13 |
120.1 |
|
H15 |
C7 |
C5 |
H13 |
240.1 |
|
C4 |
C5 |
C6 |
H12 |
53.6 |
|
C4 |
C5 |
C6 |
H11 |
173.6 |
|
C4 |
C5 |
C6 |
H10 |
293.6 |
|
C6 |
C5 |
C4 |
H9 |
242.9 |
|
C4 |
C5 |
C7 |
H14 |
304.4 |
|
C4 |
C5 |
C7 |
H15 |
64.4 |
|
C4 |
C5 |
C7 |
H13 |
184.3 |
|
C5 |
C4 |
C8 |
C9 |
227.6 |
|
C8 |
C4 |
C5 |
C3 |
127.1 |
|
C5 |
C4 |
C8 |
H16 |
107.4 |
|
C8 |
C4 |
C5 |
H8 |
243.6 |
|
C5 |
C4 |
C3 |
H7 |
308.0 |
|
C5 |
C4 |
C3 |
H6 |
67.4 |
|
C6 |
C5 |
C4 |
C8 |
261.7 |
|
O |
C8 |
C4 |
C9 |
120.7 |
|
O |
C8 |
C4 |
H16 |
240.9 |
|
C5 |
C4 |
C8 |
C3 |
230.0 |
|
C8 |
C4 |
C5 |
H9 |
18.8 |
|
C5 |
C4 |
C8 |
H8 |
116.4 |
|
C4 |
C8 |
C9 |
C1 |
308.9 |
|
C9 |
C8 |
C4 |
H16 |
120.2 |
|
C4 |
C8 |
C9 |
H18 |
69.5 |
|
C4 |
C8 |
C9 |
H17 |
188.3 |
|
C8 |
C4 |
C3 |
H7 |
177.9 |
|
C8 |
C4 |
C3 |
H6 |
297.3 |
|
O |
C8 |
C9 |
C4 |
238.0 |
|
O |
C8 |
C9 |
H16 |
117.9 |
|
C9 |
C8 |
C4 |
C5 |
227.6 |
|
C9 |
C8 |
C4 |
C3 |
357.6 |
|
C4 |
C8 |
C9 |
H16 |
239.9 |
|
C9 |
C8 |
C4 |
H8 |
111.2 |
|
C8 |
C9 |
C1 |
H3 |
165.2 |
|
H18 |
C9 |
C8 |
H17 |
241.3 |
|
C24 |
C23 |
C22 |
H30 |
179.8 |
|
C22 |
C23 |
C24 |
H31 |
180.0 |
|
C8 |
C4 |
C3 |
C5 |
229.9 |
|
C3 |
C4 |
C5 |
H9 |
251.7 |
|
C5 |
C4 |
C3 |
H8 |
243.7 |
|
C3 |
C4 |
C8 |
C9 |
357.6 |
|
C3 |
C4 |
C8 |
H16 |
237.4 |
|
C8 |
C4 |
C3 |
H8 |
113.6 |
|
C4 |
C3 |
C2 |
H4 |
59.8 |
|
C4 |
C3 |
C2 |
H5 |
179.2 |
|
H7 |
C3 |
C4 |
H6 |
240.6 |
|
C21 |
C22 |
C23 |
H30 |
180.0 |
|
C24 |
C23 |
C22 |
H31 |
180.0 |
|
C1 |
C9 |
C8 |
H16 |
69.0 |
|
C8 |
C9 |
C1 |
H18 |
120.6 |
|
C8 |
C9 |
C1 |
H17 |
239.4 |
|
C |
C1 |
C9 |
H3 |
116.9 |
|
C2 |
C1 |
C9 |
H3 |
243.4 |
|
C9 |
C1 |
C2 |
H4 |
245.8 |
|
C9 |
C1 |
C2 |
H5 |
126.4 |
|
C5 |
C4 |
C3 |
C2 |
187.7 |
|
C8 |
C4 |
C3 |
C2 |
57.6 |
|
C3 |
C2 |
C1 |
H3 |
249.6 |
|
C1 |
C2 |
C3 |
H4 |
239.7 |
|
C1 |
C2 |
C3 |
H5 |
120.3 |
|
H4 |
C2 |
C3 |
H5 |
240.6 |
|
C8 |
C9 |
C1 |
C |
282.2 |
|
C9 |
C1 |
C |
H3 |
243.1 |
|
C2 |
C1 |
C |
H3 |
117.7 |
|
C |
C1 |
C2 |
H4 |
11.7 |
|
C |
C1 |
C2 |
H5 |
252.2 |
|
C8 |
C9 |
C1 |
C2 |
48.6 |
|
C9 |
C1 |
C2 |
H3 |
116.5 |
|
C3 |
C2 |
C1 |
H4 |
120.3 |
|
C3 |
C2 |
C1 |
H5 |
239.7 |
|
C |
C1 |
C2 |
H3 |
242.3 |
|
H4 |
C2 |
C1 |
H5 |
119.4 |
|
O |
C8 |
H16 |
C4 |
119.8 |
|
O |
C8 |
H16 |
C9 |
242.9 |
|
H16 |
C8 |
C4 |
C5 |
107.4 |
|
C4 |
C8 |
H16 |
C9 |
123.1 |
|
H16 |
C8 |
C4 |
C3 |
237.4 |
|
H16 |
C8 |
C4 |
H8 |
351.0 |
|
H16 |
C8 |
C9 |
C1 |
69.0 |
|
H16 |
C8 |
C9 |
H18 |
189.6 |
|
H16 |
C8 |
C9 |
H17 |
308.4 |
|
C5 |
C7 |
H14 |
H15 |
120.0 |
|
C5 |
C7 |
H14 |
H13 |
240.0 |
|
H15 |
C7 |
H14 |
H13 |
120.0 |
|
C5 |
C7 |
H15 |
H14 |
240.0 |
|
C5 |
C7 |
H15 |
H13 |
119.9 |
|
H14 |
C7 |
H15 |
H13 |
240.0 |
|
C5 |
C7 |
H13 |
H14 |
120.1 |
|
C5 |
C7 |
H13 |
H15 |
240.1 |
|
H14 |
C7 |
H13 |
H15 |
120.0 |
|
H12 |
C6 |
C5 |
C4 |
53.6 |
|
C5 |
C6 |
H12 |
H11 |
120.0 |
|
C5 |
C6 |
H12 |
H10 |
240.0 |
|
H12 |
C6 |
C5 |
H9 |
296.5 |
|
H11 |
C6 |
H12 |
H10 |
120.0 |
|
H11 |
C6 |
C5 |
C4 |
173.6 |
|
C5 |
C6 |
H11 |
H12 |
240.0 |
|
C5 |
C6 |
H11 |
H10 |
120.0 |
|
H11 |
C6 |
C5 |
H9 |
56.5 |
|
H12 |
C6 |
H11 |
H10 |
240.0 |
|
H10 |
C6 |
C5 |
C4 |
293.6 |
|
C5 |
C6 |
H10 |
H12 |
120.0 |
|
C5 |
C6 |
H10 |
H11 |
240.0 |
|
H10 |
C6 |
C5 |
H9 |
176.5 |
|
H12 |
C6 |
H10 |
H11 |
120.0 |
|
C6 |
C5 |
H9 |
C4 |
119.1 |
|
H9 |
C5 |
C6 |
H12 |
296.5 |
|
H9 |
C5 |
C6 |
H11 |
56.5 |
|
H9 |
C5 |
C6 |
H10 |
176.5 |
|
H9 |
C5 |
C7 |
H14 |
63.6 |
|
H9 |
C5 |
C7 |
H15 |
183.6 |
|
H9 |
C5 |
C7 |
H13 |
303.5 |
|
H9 |
C5 |
C4 |
C3 |
251.7 |
|
H9 |
C5 |
C4 |
H8 |
135.2 |
|
H3 |
C1 |
C2 |
H4 |
129.3 |
|
H3 |
C1 |
C2 |
H5 |
9.9 |
|
C3 |
C2 |
H4 |
H5 |
119.1 |
|
H4 |
C2 |
C1 |
H3 |
129.3 |
|
C1 |
C2 |
H4 |
H5 |
240.9 |
|
C3 |
C2 |
H5 |
H4 |
240.9 |
|
H5 |
C2 |
C1 |
H3 |
9.9 |
|
C1 |
C2 |
H5 |
H4 |
119.1 |
|
C4 |
C3 |
H7 |
H6 |
119.1 |
|
H7 |
C3 |
C2 |
H4 |
299.5 |
|
H7 |
C3 |
C2 |
H5 |
58.9 |
|
C4 |
C3 |
H6 |
H7 |
240.9 |
|
H6 |
C3 |
C2 |
H4 |
180.0 |
|
H6 |
C3 |
C2 |
H5 |
299.4 |
|
C8 |
C4 |
H8 |
C5 |
122.2 |
|
C5 |
C4 |
H8 |
C3 |
122.2 |
|
H8 |
C4 |
C5 |
H9 |
135.2 |
|
H8 |
C4 |
C8 |
C9 |
111.2 |
|
C8 |
C4 |
H8 |
C3 |
244.4 |
|
H8 |
C4 |
C8 |
H16 |
351.0 |
|
H8 |
C4 |
C3 |
H7 |
64.3 |
|
H8 |
C4 |
C3 |
H6 |
183.7 |
|
H2 |
C |
C1 |
H3 |
296.8 |
|
H1 |
C |
H2 |
H |
120.0 |
|
H1 |
C |
C1 |
H3 |
56.9 |
|
H2 |
C |
H1 |
H |
240.0 |
|
H |
C |
C1 |
H3 |
176.9 |
|
H2 |
C |
H |
H1 |
120.0 |
|
H20 |
C11 |
N |
C12 |
32.9 |
|
H20 |
C11 |
C10 |
O1 |
30.0 |
|
H19 |
C11 |
N |
C12 |
151.3 |
|
H19 |
C11 |
C10 |
O1 |
271.6 |
|
N1 |
C13 |
H23 |
H22 |
120.0 |
|
N1 |
C13 |
H23 |
H21 |
240.0 |
|
H22 |
C13 |
H23 |
H21 |
120.0 |
|
N1 |
C13 |
H22 |
H23 |
240.0 |
|
N1 |
C13 |
H22 |
H21 |
119.9 |
|
H23 |
C13 |
H22 |
H21 |
240.0 |
|
N1 |
C13 |
H21 |
H23 |
120.1 |
|
N1 |
C13 |
H21 |
H22 |
240.1 |
|
H23 |
C13 |
H21 |
H22 |
120.0 |
|
H25 |
C17 |
C16 |
H24 |
0.6 |
|
H25 |
C17 |
C18 |
C19 |
179.6 |
|
H25 |
C17 |
C18 |
H26 |
359.6 |
|
C17 |
C18 |
H26 |
C19 |
180.0 |
|
H26 |
C18 |
C17 |
H25 |
359.6 |
|
H26 |
C18 |
C19 |
H27 |
359.4 |
|
H27 |
C19 |
C18 |
H26 |
359.4 |
|
C12 |
C20 |
H29 |
O2 |
245.3 |
|
C12 |
C20 |
H29 |
H28 |
122.6 |
|
H29 |
C20 |
O2 |
C21 |
99.2 |
|
O2 |
C20 |
H29 |
H28 |
237.3 |
|
C12 |
C20 |
H28 |
O2 |
114.7 |
|
C12 |
C20 |
H28 |
H29 |
237.4 |
|
H28 |
C20 |
O2 |
C21 |
337.4 |
|
O2 |
C20 |
H28 |
H29 |
122.7 |
|
C21 |
C22 |
H30 |
C23 |
180.0 |
|
H30 |
C22 |
C23 |
H31 |
359.8 |
|
H31 |
C23 |
C22 |
H30 |
359.8 |
|
H32 |
C24 |
C23 |
H31 |
359.6 |
|
H33 |
C25 |
C24 |
H32 |
0.3 |
|
H34 |
C26 |
C25 |
H33 |
0.4 |
|
C8 |
C9 |
H18 |
C1 |
236.1 |
|
H18 |
C9 |
C8 |
H16 |
189.6 |
|
C8 |
C9 |
H18 |
H17 |
118.0 |
|
H18 |
C9 |
C1 |
H3 |
44.6 |
|
C8 |
C9 |
H17 |
C1 |
123.9 |
|
H17 |
C9 |
C8 |
H16 |
308.4 |
|
C8 |
C9 |
H17 |
H18 |
242.0 |
|
H17 |
C9 |
C1 |
H3 |
285.9 |
|