PDB Chemical Component E7G
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for E7G
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OP1 |
P |
1.501 |
1.479 |
| C72 |
C71 |
1.511 |
1.530 |
| P |
OP2 |
1.498 |
1.610 |
| P |
O5' |
1.592 |
1.610 |
| C71 |
N7 |
1.468 |
1.465 |
| O5' |
C5' |
1.419 |
1.429 |
| O6 |
C6 |
1.236 |
1.221 |
| N7 |
C8 |
1.446 |
1.469 |
| N7 |
C5 |
1.328 |
1.412 |
| C8 |
N9 |
1.453 |
1.468 |
| C5 |
C6 |
1.467 |
1.403 |
| C5 |
C4 |
1.461 |
1.385 |
| C5' |
C4' |
1.506 |
1.529 |
| C6 |
N1 |
1.326 |
1.350 |
| N9 |
C4 |
1.325 |
1.384 |
| N9 |
C1' |
1.475 |
1.465 |
| O4' |
C4' |
1.446 |
1.438 |
| O4' |
C1' |
1.413 |
1.445 |
| N1 |
C2 |
1.339 |
1.360 |
| C4' |
C3' |
1.514 |
1.541 |
| C4 |
N3 |
1.347 |
1.344 |
| C3' |
O3' |
1.413 |
1.429 |
| C3' |
C2' |
1.519 |
1.549 |
| C1' |
C2' |
1.526 |
1.549 |
| C2 |
N3 |
1.350 |
1.315 |
| C2 |
N2 |
1.344 |
1.372 |
| C2' |
O2' |
1.415 |
1.429 |
| P |
OP3 |
1.600 |
1.610 |
| C1' |
H1 |
1.100 |
1.090 |
| C2' |
H2 |
1.099 |
1.090 |
| C3' |
H3 |
1.100 |
1.090 |
| C4' |
H4 |
1.100 |
1.090 |
| C5' |
H5 |
1.100 |
1.090 |
| C5' |
H6 |
1.100 |
1.090 |
| C8 |
H7 |
1.100 |
1.090 |
| N2 |
H8 |
1.000 |
0.970 |
| N2 |
H9 |
1.000 |
0.970 |
| O2' |
H11 |
0.950 |
0.967 |
| O3' |
H12 |
0.950 |
0.966 |
| OP2 |
H13 |
0.950 |
0.967 |
| C71 |
H14 |
1.100 |
1.090 |
| C71 |
H15 |
1.099 |
1.090 |
| C72 |
H16 |
1.100 |
1.090 |
| C72 |
H17 |
1.100 |
1.090 |
| C72 |
H18 |
1.100 |
1.090 |
| OP3 |
H19 |
0.949 |
0.967 |
| C8 |
H20 |
1.100 |
1.090 |
| N1 |
H21 |
1.000 |
0.970 |
Bond Angles for E7G
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP1 |
P |
OP3 |
107.1 |
109.5 |
| C72 |
C71 |
H14 |
108.4 |
109.4 |
| C72 |
C71 |
H15 |
108.4 |
109.5 |
| P |
OP2 |
H13 |
109.5 |
114.0 |
| O5' |
C5' |
H5 |
108.8 |
109.4 |
| O5' |
C5' |
H6 |
108.8 |
109.5 |
| N7 |
C8 |
N9 |
96.9 |
105.6 |
| N7 |
C8 |
H7 |
112.5 |
109.4 |
| N7 |
C8 |
H20 |
112.5 |
111.2 |
| N9 |
C8 |
H7 |
112.5 |
110.2 |
| N9 |
C8 |
H20 |
112.5 |
110.3 |
| C5 |
C6 |
N1 |
116.4 |
118.8 |
| C5 |
C4 |
N3 |
117.7 |
119.4 |
| C5' |
C4' |
H4 |
108.7 |
109.9 |
| C6 |
N1 |
H21 |
118.6 |
119.9 |
| N9 |
C1' |
H1 |
109.2 |
110.6 |
| O4' |
C4' |
H4 |
109.6 |
109.8 |
| O4' |
C1' |
H1 |
110.1 |
110.6 |
| N1 |
C2 |
N3 |
123.6 |
121.5 |
| N1 |
C2 |
N2 |
118.1 |
119.3 |
| C4' |
C3' |
O3' |
113.6 |
110.5 |
| C4' |
C3' |
H3 |
108.6 |
110.6 |
| C2 |
N3 |
C4 |
120.2 |
121.3 |
| O3' |
C3' |
H3 |
110.0 |
110.4 |
| C3' |
O3' |
H12 |
109.5 |
114.0 |
| C3' |
C2' |
O2' |
110.3 |
110.9 |
| C3' |
C2' |
H2 |
111.6 |
111.0 |
| C1' |
C2' |
O2' |
108.4 |
110.9 |
| C2' |
C1' |
H1 |
108.6 |
110.6 |
| C1' |
C2' |
H2 |
111.5 |
111.0 |
| N2 |
C2 |
N3 |
118.2 |
119.2 |
| C2 |
N2 |
H8 |
120.0 |
120.0 |
| C2 |
N2 |
H9 |
120.0 |
120.0 |
| O2' |
C2' |
H2 |
113.3 |
110.7 |
| C2' |
O2' |
H11 |
109.5 |
114.1 |
| P |
OP3 |
H19 |
109.5 |
114.0 |
| H5 |
C5' |
H6 |
109.5 |
109.5 |
| H7 |
C8 |
H20 |
109.5 |
110.2 |
| H8 |
N2 |
H9 |
120.0 |
120.0 |
| H14 |
C71 |
H15 |
109.5 |
109.4 |
| H16 |
C72 |
H17 |
109.5 |
109.4 |
| H16 |
C72 |
H18 |
109.5 |
109.5 |
| H17 |
C72 |
H18 |
109.5 |
109.4 |
Torsion Angles for E7G
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP1 |
P |
OP2 |
H13 |
360.0 |
180.0 |
| OP1 |
P |
OP3 |
H19 |
0.0 |
300.0 |
| H14 |
C71 |
C72 |
H15 |
241.3 |
120.0 |
| P |
O5' |
C5' |
H5 |
285.8 |
60.1 |
| P |
O5' |
C5' |
H6 |
45.0 |
300.1 |
| C71 |
N7 |
C8 |
H7 |
297.1 |
298.6 |
| C71 |
N7 |
C8 |
H20 |
61.3 |
60.4 |
| O5' |
C5' |
C4' |
H4 |
216.6 |
306.0 |
| H5 |
C5' |
O5' |
H6 |
240.7 |
120.0 |
| O6 |
C6 |
N1 |
H21 |
359.7 |
0.3 |
| N9 |
C8 |
N7 |
H7 |
242.1 |
241.4 |
| N9 |
C8 |
N7 |
H20 |
117.9 |
119.6 |
| H7 |
C8 |
N7 |
H20 |
235.8 |
238.1 |
| N7 |
C8 |
N9 |
H7 |
117.9 |
118.0 |
| N7 |
C8 |
N9 |
H20 |
242.1 |
239.8 |
| C8 |
N9 |
C1' |
H1 |
118.7 |
352.0 |
| H7 |
C8 |
N9 |
H20 |
124.2 |
121.8 |
| C6 |
C5 |
C4 |
N3 |
359.2 |
359.5 |
| C5 |
C6 |
N1 |
H21 |
180.1 |
179.4 |
| C2 |
N3 |
C4 |
C5 |
0.8 |
0.1 |
| O4' |
C4' |
C5' |
H4 |
120.3 |
121.1 |
| C5' |
C4' |
C3' |
O3' |
76.0 |
119.7 |
| C5' |
C4' |
C3' |
H3 |
313.3 |
357.1 |
| C6 |
N1 |
C2 |
N3 |
360.0 |
0.1 |
| C6 |
N1 |
C2 |
N2 |
179.9 |
180.3 |
| C4 |
N9 |
C1' |
H1 |
298.2 |
173.3 |
| O4' |
C1' |
N9 |
H1 |
239.1 |
237.1 |
| N9 |
C1' |
C2' |
O2' |
212.9 |
273.8 |
| C2' |
C1' |
N9 |
H1 |
120.1 |
122.9 |
| N9 |
C1' |
C2' |
H2 |
338.3 |
37.4 |
| C5' |
C4' |
O4' |
H4 |
240.2 |
238.9 |
| C4' |
O4' |
C1' |
H1 |
116.4 |
78.4 |
| O4' |
C4' |
C3' |
H3 |
74.2 |
116.7 |
| N9 |
C1' |
O4' |
H1 |
120.4 |
122.9 |
| C2' |
C1' |
O4' |
H1 |
242.0 |
241.5 |
| O4' |
C1' |
C2' |
H2 |
217.8 |
278.8 |
| N1 |
C2 |
N3 |
C4 |
359.5 |
0.2 |
| N2 |
C2 |
N1 |
N3 |
179.9 |
180.2 |
| N1 |
C2 |
N2 |
H8 |
180.1 |
179.7 |
| N1 |
C2 |
N2 |
H9 |
0.1 |
359.8 |
| O3' |
C3' |
C4' |
H3 |
122.7 |
122.6 |
| C4' |
C3' |
O3' |
H12 |
180.0 |
176.2 |
| C4' |
C3' |
C2' |
O2' |
283.9 |
220.9 |
| C4' |
C3' |
C2' |
H2 |
157.0 |
97.4 |
| N2 |
C2 |
N3 |
C4 |
179.6 |
180.0 |
| C4' |
C3' |
O3' |
H3 |
238.0 |
237.3 |
| O3' |
C3' |
C2' |
O2' |
46.5 |
339.6 |
| O3' |
C3' |
C2' |
H2 |
279.6 |
216.1 |
| C1' |
C2' |
C3' |
O2' |
114.4 |
118.2 |
| C3' |
C2' |
C1' |
H1 |
217.5 |
278.6 |
| C1' |
C2' |
C3' |
H2 |
241.4 |
241.7 |
| O2' |
C2' |
C3' |
H2 |
126.9 |
123.5 |
| C3' |
C2' |
O2' |
H11 |
180.0 |
292.7 |
| N9 |
C1' |
C2' |
H1 |
239.5 |
237.1 |
| O4' |
C1' |
C2' |
H1 |
119.0 |
118.5 |
| C3' |
C2' |
C1' |
O2' |
244.1 |
241.8 |
| C3' |
C2' |
C1' |
H2 |
118.7 |
118.3 |
| O2' |
C2' |
C1' |
H2 |
234.6 |
236.5 |
| C1' |
C2' |
O2' |
H11 |
70.3 |
180.0 |
| C5 |
C4 |
N3 |
C2 |
0.8 |
0.1 |
| N1 |
C2 |
N3 |
N2 |
179.9 |
180.2 |
| N3 |
C2 |
N2 |
H8 |
360.0 |
359.9 |
| N3 |
C2 |
N2 |
H9 |
180.0 |
180.0 |
| N1 |
C2 |
N2 |
N3 |
180.1 |
179.8 |
| H8 |
N2 |
C2 |
H9 |
180.0 |
179.9 |
| C3' |
C2' |
O2' |
H2 |
234.1 |
236.4 |
| O2' |
C2' |
C1' |
H1 |
333.3 |
36.8 |
| C1' |
C2' |
O2' |
H2 |
124.4 |
123.7 |
| OP3 |
P |
OP2 |
H13 |
236.5 |
60.0 |
| H1 |
C1' |
C2' |
O2' |
333.3 |
36.8 |
| H1 |
C1' |
C2' |
H2 |
98.8 |
160.3 |
| C3' |
C2' |
H2 |
O2' |
125.2 |
123.6 |
| C1' |
C2' |
H2 |
O2' |
237.4 |
236.4 |
| H2 |
C2' |
C1' |
H1 |
98.8 |
160.3 |
| H2 |
C2' |
O2' |
H11 |
305.9 |
56.3 |
| C4' |
C3' |
H3 |
O3' |
124.9 |
122.7 |
| H3 |
C3' |
O3' |
H12 |
302.0 |
298.9 |
| H3 |
C3' |
C2' |
O2' |
169.4 |
102.1 |
| H3 |
C3' |
C2' |
H2 |
42.5 |
338.6 |
| H4 |
C4' |
C3' |
O3' |
313.0 |
358.7 |
| H4 |
C4' |
C3' |
H3 |
190.3 |
236.1 |
| O5' |
C5' |
H5 |
H6 |
118.9 |
240.0 |
| H5 |
C5' |
C4' |
H4 |
96.2 |
66.0 |
| O5' |
C5' |
H6 |
H5 |
241.1 |
120.0 |
| H6 |
C5' |
C4' |
H4 |
336.9 |
186.0 |
| N7 |
C8 |
H7 |
N9 |
251.8 |
244.4 |
| N7 |
C8 |
H7 |
H20 |
125.9 |
122.5 |
| N9 |
C8 |
H7 |
H20 |
234.1 |
238.1 |
| H8 |
N2 |
C2 |
N3 |
360.0 |
359.9 |
| C2 |
N2 |
H8 |
H9 |
180.0 |
180.1 |
| H9 |
N2 |
C2 |
N3 |
180.0 |
180.0 |
| C2 |
N2 |
H9 |
H8 |
180.0 |
179.9 |
| H11 |
O2' |
C2' |
H2 |
305.9 |
56.3 |
| H12 |
O3' |
C3' |
H3 |
302.0 |
298.9 |
| C72 |
C71 |
H14 |
H15 |
118.0 |
240.0 |
| C72 |
C71 |
H15 |
H14 |
242.0 |
120.0 |
| H16 |
C72 |
C71 |
H14 |
300.6 |
300.0 |
| H16 |
C72 |
C71 |
H15 |
59.3 |
180.1 |
| H17 |
C72 |
H16 |
H18 |
120.0 |
120.0 |
| H17 |
C72 |
C71 |
H14 |
60.7 |
60.0 |
| H17 |
C72 |
C71 |
H15 |
179.4 |
300.1 |
| H16 |
C72 |
H17 |
H18 |
240.0 |
240.0 |
| H18 |
C72 |
C71 |
H14 |
180.6 |
180.0 |
| H18 |
C72 |
C71 |
H15 |
299.4 |
60.0 |
| H16 |
C72 |
H18 |
H17 |
120.0 |
119.9 |
| N7 |
C8 |
H20 |
N9 |
108.2 |
116.7 |
| N7 |
C8 |
H20 |
H7 |
234.2 |
238.6 |
| N9 |
C8 |
H20 |
H7 |
125.9 |
121.9 |
| H21 |
N1 |
C2 |
N3 |
180.0 |
180.1 |
| H21 |
N1 |
C2 |
N2 |
359.9 |
0.3 |