PDB Chemical Component E78
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for E78
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C16 |
C6 |
1.490 |
1.507 |
O24 |
C10 |
1.223 |
1.216 |
C6 |
C2 |
1.380 |
1.366 |
C6 |
C4 |
1.376 |
1.399 |
C13 |
C14 |
1.497 |
1.530 |
C13 |
C15 |
1.502 |
1.530 |
C10 |
C4 |
1.459 |
1.473 |
C10 |
N22 |
1.381 |
1.344 |
C2 |
C3 |
1.384 |
1.399 |
C4 |
C5 |
1.365 |
1.400 |
C14 |
C15 |
1.503 |
1.530 |
C20 |
N22 |
1.447 |
1.465 |
C20 |
C15 |
1.490 |
1.530 |
C20 |
C19 |
1.512 |
1.529 |
N22 |
C12 |
1.449 |
1.468 |
O25 |
C11 |
1.221 |
1.213 |
C5 |
C12 |
1.482 |
1.509 |
C5 |
C1 |
1.374 |
1.361 |
C3 |
C1 |
1.381 |
1.400 |
C3 |
C7 |
1.451 |
1.475 |
S26 |
C7 |
1.720 |
1.762 |
S26 |
C9 |
1.719 |
1.710 |
C7 |
C8 |
1.382 |
1.351 |
C11 |
C18 |
1.494 |
1.507 |
C11 |
N23 |
1.373 |
1.347 |
C9 |
N23 |
1.383 |
1.387 |
C9 |
N21 |
1.311 |
1.299 |
C8 |
N21 |
1.372 |
1.315 |
C8 |
C17 |
1.472 |
1.506 |
C1 |
H1 |
1.080 |
1.080 |
C2 |
H2 |
1.080 |
1.080 |
C12 |
H3 |
1.100 |
1.090 |
C12 |
H4 |
1.100 |
1.090 |
C13 |
H5 |
1.100 |
1.090 |
C13 |
H6 |
1.100 |
1.090 |
C14 |
H7 |
1.100 |
1.090 |
C14 |
H8 |
1.100 |
1.089 |
C15 |
H9 |
1.100 |
1.090 |
C16 |
H10 |
1.100 |
1.091 |
C16 |
H11 |
1.100 |
1.090 |
C16 |
H12 |
1.100 |
1.090 |
C19 |
H13 |
1.100 |
1.090 |
C19 |
H14 |
1.100 |
1.090 |
C19 |
H15 |
1.100 |
1.090 |
C20 |
H16 |
1.100 |
1.091 |
N23 |
H17 |
1.000 |
0.970 |
C17 |
H18 |
1.100 |
1.090 |
C17 |
H19 |
1.100 |
1.091 |
C17 |
H20 |
1.100 |
1.090 |
C18 |
H21 |
1.100 |
1.090 |
C18 |
H22 |
1.100 |
1.091 |
C18 |
H23 |
1.100 |
1.090 |
Bond Angles for E78
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C16 |
C6 |
C4 |
123.4 |
120.0 |
C6 |
C16 |
H10 |
109.5 |
109.5 |
C6 |
C16 |
H11 |
109.5 |
109.5 |
C6 |
C16 |
H12 |
109.5 |
109.5 |
C6 |
C2 |
H2 |
118.9 |
119.9 |
C14 |
C13 |
C15 |
60.1 |
60.0 |
C13 |
C14 |
C15 |
60.1 |
60.0 |
C14 |
C13 |
H5 |
120.0 |
117.5 |
C14 |
C13 |
H6 |
120.0 |
117.5 |
C13 |
C14 |
H7 |
120.0 |
117.5 |
C13 |
C14 |
H8 |
120.0 |
117.5 |
C13 |
C15 |
C14 |
59.8 |
60.0 |
C15 |
C13 |
H5 |
120.0 |
117.5 |
C15 |
C13 |
H6 |
120.0 |
117.5 |
C13 |
C15 |
H9 |
116.1 |
117.5 |
C4 |
C10 |
N22 |
105.2 |
110.4 |
C10 |
C4 |
C5 |
108.4 |
108.3 |
C10 |
N22 |
C20 |
122.1 |
125.6 |
C10 |
N22 |
C12 |
114.2 |
108.8 |
C2 |
C3 |
C7 |
120.2 |
120.0 |
C3 |
C2 |
H2 |
118.9 |
120.0 |
C15 |
C14 |
H7 |
120.0 |
117.5 |
C15 |
C14 |
H8 |
120.0 |
117.5 |
C14 |
C15 |
H9 |
116.1 |
117.5 |
N22 |
C20 |
H16 |
108.0 |
109.5 |
C20 |
C15 |
H9 |
116.3 |
115.6 |
C20 |
C19 |
H13 |
109.5 |
109.5 |
C20 |
C19 |
H14 |
109.5 |
109.5 |
C20 |
C19 |
H15 |
109.5 |
109.5 |
N22 |
C12 |
H3 |
111.7 |
110.1 |
N22 |
C12 |
H4 |
111.7 |
110.2 |
C5 |
C12 |
H3 |
111.7 |
110.1 |
C5 |
C12 |
H4 |
111.7 |
110.1 |
C5 |
C1 |
H1 |
120.7 |
120.1 |
C3 |
C1 |
H1 |
120.7 |
120.1 |
C3 |
C7 |
C8 |
130.0 |
126.0 |
C7 |
C8 |
N21 |
115.9 |
114.3 |
C7 |
C8 |
C17 |
127.3 |
122.9 |
N23 |
C11 |
C18 |
110.7 |
120.0 |
C11 |
C18 |
H21 |
109.5 |
109.5 |
C11 |
C18 |
H22 |
109.5 |
109.5 |
C11 |
C18 |
H23 |
109.4 |
109.5 |
C9 |
N23 |
C11 |
123.1 |
120.0 |
C11 |
N23 |
H17 |
118.5 |
120.0 |
N23 |
C9 |
N21 |
124.0 |
124.8 |
C9 |
N23 |
H17 |
118.5 |
120.0 |
C8 |
N21 |
C9 |
110.2 |
117.1 |
C17 |
C8 |
N21 |
116.8 |
122.8 |
C8 |
C17 |
H18 |
109.5 |
109.5 |
C8 |
C17 |
H19 |
109.5 |
109.5 |
C8 |
C17 |
H20 |
109.5 |
109.5 |
H3 |
C12 |
H4 |
109.4 |
110.1 |
H5 |
C13 |
H6 |
109.5 |
115.5 |
H7 |
C14 |
H8 |
109.5 |
115.5 |
H10 |
C16 |
H11 |
109.5 |
109.5 |
H10 |
C16 |
H12 |
109.4 |
109.4 |
H11 |
C16 |
H12 |
109.5 |
109.5 |
H13 |
C19 |
H14 |
109.5 |
109.4 |
H13 |
C19 |
H15 |
109.5 |
109.4 |
H14 |
C19 |
H15 |
109.5 |
109.5 |
H18 |
C17 |
H19 |
109.4 |
109.5 |
H18 |
C17 |
H20 |
109.4 |
109.4 |
H19 |
C17 |
H20 |
109.5 |
109.5 |
H21 |
C18 |
H22 |
109.5 |
109.4 |
H21 |
C18 |
H23 |
109.5 |
109.5 |
H22 |
C18 |
H23 |
109.5 |
109.4 |
Torsion Angles for E78
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C16 |
C6 |
C2 |
H2 |
359.8 |
0.0 |
H10 |
C16 |
C6 |
H11 |
240.0 |
240.0 |
H10 |
C16 |
C6 |
H12 |
120.0 |
120.0 |
H11 |
C16 |
C6 |
H12 |
240.0 |
239.9 |
C3 |
C2 |
C6 |
H2 |
180.0 |
179.9 |
C4 |
C6 |
C16 |
H10 |
269.7 |
270.3 |
C4 |
C6 |
C16 |
H11 |
29.7 |
30.3 |
C4 |
C6 |
C16 |
H12 |
149.8 |
150.3 |
C4 |
C6 |
C2 |
H2 |
180.3 |
179.7 |
C6 |
C4 |
C10 |
N22 |
179.6 |
180.0 |
C14 |
C13 |
C15 |
C14 |
-0.0 |
-0.0 |
C15 |
C13 |
C14 |
H5 |
250.5 |
252.5 |
C15 |
C13 |
C14 |
H6 |
109.5 |
107.5 |
C14 |
C13 |
C15 |
H9 |
253.7 |
252.5 |
C15 |
C14 |
C13 |
H7 |
250.5 |
252.5 |
C15 |
C14 |
C13 |
H8 |
109.5 |
107.5 |
C13 |
C14 |
C15 |
H9 |
106.3 |
107.5 |
H5 |
C13 |
C14 |
H6 |
219.0 |
215.0 |
H7 |
C14 |
C13 |
H8 |
219.0 |
215.0 |
C15 |
C13 |
C14 |
C15 |
-0.0 |
360.0 |
C14 |
C13 |
C15 |
H5 |
109.5 |
107.5 |
C14 |
C13 |
C15 |
H6 |
250.5 |
252.5 |
C15 |
C13 |
C14 |
H7 |
109.5 |
107.5 |
C15 |
C13 |
C14 |
H8 |
250.5 |
252.5 |
C13 |
C15 |
C14 |
H7 |
250.5 |
252.6 |
C13 |
C15 |
C14 |
H8 |
109.5 |
107.5 |
C14 |
C15 |
C13 |
H9 |
106.3 |
107.5 |
C20 |
C15 |
C13 |
H9 |
216.5 |
214.9 |
H5 |
C13 |
C15 |
H6 |
141.0 |
145.0 |
C16 |
C6 |
C4 |
C10 |
0.0 |
0.1 |
C4 |
C10 |
N22 |
C20 |
170.2 |
179.9 |
C4 |
C10 |
N22 |
C12 |
1.0 |
0.0 |
N22 |
C10 |
C4 |
C5 |
359.3 |
0.0 |
C10 |
N22 |
C20 |
H16 |
8.1 |
180.0 |
C10 |
N22 |
C12 |
H3 |
117.6 |
240.8 |
C10 |
N22 |
C12 |
H4 |
240.5 |
119.2 |
C6 |
C2 |
C3 |
H2 |
180.0 |
180.1 |
C2 |
C3 |
C1 |
H1 |
179.9 |
180.0 |
C2 |
C3 |
C7 |
C8 |
151.2 |
132.4 |
C16 |
C6 |
C4 |
C5 |
180.3 |
180.0 |
C5 |
C4 |
C10 |
N22 |
359.3 |
0.0 |
C4 |
C5 |
C12 |
H3 |
241.9 |
119.2 |
C4 |
C5 |
C12 |
H4 |
119.0 |
240.8 |
C4 |
C5 |
C1 |
H1 |
180.2 |
179.9 |
C15 |
C14 |
C13 |
C15 |
-0.0 |
360.0 |
C15 |
C14 |
C13 |
H5 |
109.5 |
107.5 |
C15 |
C14 |
C13 |
H6 |
250.5 |
252.5 |
C13 |
C14 |
C15 |
H7 |
109.5 |
107.4 |
C13 |
C14 |
C15 |
H8 |
250.5 |
252.5 |
C14 |
C15 |
C13 |
H5 |
250.5 |
252.5 |
C14 |
C15 |
C13 |
H6 |
109.5 |
107.5 |
C13 |
C15 |
C14 |
H9 |
253.7 |
252.5 |
C20 |
C15 |
C14 |
H9 |
147.8 |
145.0 |
H7 |
C14 |
C15 |
H8 |
141.1 |
145.0 |
C10 |
N22 |
C20 |
C12 |
191.8 |
180.1 |
N22 |
C20 |
C15 |
H9 |
309.0 |
34.3 |
N22 |
C20 |
C19 |
H13 |
180.0 |
300.0 |
N22 |
C20 |
C19 |
H14 |
300.0 |
60.0 |
N22 |
C20 |
C19 |
H15 |
60.0 |
180.0 |
C20 |
N22 |
C12 |
H3 |
308.5 |
60.8 |
C20 |
N22 |
C12 |
H4 |
71.5 |
299.3 |
C20 |
C15 |
C13 |
H5 |
0.7 |
359.9 |
C20 |
C15 |
C13 |
H6 |
219.7 |
214.9 |
C13 |
C15 |
C20 |
H9 |
143.4 |
145.7 |
C10 |
N22 |
C20 |
C15 |
250.2 |
60.1 |
C20 |
C15 |
C14 |
H7 |
144.6 |
145.0 |
C20 |
C15 |
C14 |
H8 |
3.6 |
0.0 |
C14 |
C15 |
C20 |
H9 |
212.3 |
214.3 |
C10 |
N22 |
C20 |
C19 |
125.1 |
300.1 |
C19 |
C20 |
C15 |
H9 |
73.4 |
154.3 |
H13 |
C19 |
C20 |
H14 |
240.0 |
240.0 |
H13 |
C19 |
C20 |
H15 |
120.0 |
120.0 |
H14 |
C19 |
C20 |
H15 |
240.0 |
240.0 |
C10 |
N22 |
C12 |
C20 |
169.1 |
179.9 |
C5 |
C12 |
N22 |
H3 |
241.5 |
119.2 |
C5 |
C12 |
N22 |
H4 |
118.5 |
240.8 |
H3 |
C12 |
N22 |
H4 |
237.0 |
121.6 |
O25 |
C11 |
C18 |
H21 |
360.0 |
270.1 |
O25 |
C11 |
C18 |
H22 |
120.0 |
30.0 |
O25 |
C11 |
C18 |
H23 |
240.0 |
150.0 |
O25 |
C11 |
N23 |
H17 |
186.1 |
180.0 |
C10 |
C4 |
C5 |
C12 |
0.1 |
360.0 |
C10 |
N22 |
C12 |
C5 |
359.0 |
360.0 |
N22 |
C12 |
C5 |
H3 |
118.5 |
240.8 |
N22 |
C12 |
C5 |
H4 |
241.5 |
119.2 |
C12 |
C5 |
C1 |
H1 |
0.3 |
0.0 |
H3 |
C12 |
C5 |
H4 |
122.9 |
238.4 |
C3 |
C1 |
C5 |
H1 |
180.0 |
179.7 |
C5 |
C1 |
C3 |
H1 |
180.0 |
180.3 |
C7 |
C3 |
C2 |
H2 |
1.6 |
360.0 |
C7 |
C3 |
C1 |
H1 |
358.1 |
0.0 |
C3 |
C7 |
C8 |
N21 |
181.1 |
179.9 |
C3 |
C7 |
C8 |
C17 |
1.2 |
360.0 |
S26 |
C9 |
N23 |
H17 |
178.3 |
0.3 |
C7 |
C8 |
N21 |
C9 |
0.2 |
0.1 |
C17 |
C8 |
C7 |
N21 |
180.1 |
180.1 |
C7 |
C8 |
C17 |
H18 |
179.9 |
84.7 |
C7 |
C8 |
C17 |
H19 |
299.9 |
204.7 |
C7 |
C8 |
C17 |
H20 |
59.9 |
324.8 |
C9 |
N23 |
C11 |
C18 |
185.5 |
180.0 |
C18 |
C11 |
N23 |
H17 |
5.5 |
0.0 |
H21 |
C18 |
C11 |
H22 |
240.0 |
240.0 |
H21 |
C18 |
C11 |
H23 |
120.0 |
120.0 |
H22 |
C18 |
C11 |
H23 |
240.0 |
240.0 |
N23 |
C11 |
C18 |
H21 |
180.5 |
90.0 |
N23 |
C11 |
C18 |
H22 |
300.6 |
210.0 |
N23 |
C11 |
C18 |
H23 |
60.5 |
330.0 |
C11 |
N23 |
C9 |
N21 |
178.3 |
360.0 |
C9 |
N23 |
C11 |
H17 |
180.0 |
180.0 |
C11 |
N23 |
C9 |
H17 |
180.0 |
180.0 |
C8 |
N21 |
C9 |
N23 |
179.9 |
180.0 |
N21 |
C9 |
N23 |
C11 |
178.3 |
360.0 |
N21 |
C9 |
N23 |
H17 |
358.3 |
180.0 |
C17 |
C8 |
N21 |
C9 |
180.1 |
180.0 |
C7 |
C8 |
N21 |
C17 |
180.1 |
180.1 |
N23 |
C9 |
N21 |
C8 |
179.9 |
180.0 |
N21 |
C8 |
C17 |
H18 |
360.0 |
264.8 |
N21 |
C8 |
C17 |
H19 |
120.0 |
24.8 |
N21 |
C8 |
C17 |
H20 |
240.0 |
144.8 |
C7 |
C8 |
C17 |
N21 |
179.9 |
179.9 |
H18 |
C17 |
C8 |
H19 |
240.0 |
240.0 |
H18 |
C17 |
C8 |
H20 |
120.0 |
120.0 |
H19 |
C17 |
C8 |
H20 |
240.0 |
240.0 |
H2 |
C2 |
C3 |
C7 |
1.6 |
360.0 |
N22 |
C12 |
H3 |
H4 |
124.3 |
238.4 |
C5 |
C12 |
H3 |
H4 |
235.8 |
121.6 |
N22 |
C12 |
H4 |
H3 |
235.7 |
121.6 |
C5 |
C12 |
H4 |
H3 |
124.2 |
238.4 |
C14 |
C13 |
H5 |
C15 |
289.3 |
291.4 |
H5 |
C13 |
C14 |
C15 |
109.5 |
107.5 |
C14 |
C13 |
H5 |
H6 |
144.7 |
145.7 |
H5 |
C13 |
C14 |
H7 |
219.0 |
215.0 |
H5 |
C13 |
C14 |
H8 |
0.0 |
360.0 |
H5 |
C13 |
C15 |
C14 |
250.5 |
252.5 |
C15 |
C13 |
H5 |
H6 |
215.3 |
214.3 |
H5 |
C13 |
C15 |
H9 |
144.2 |
145.0 |
C14 |
C13 |
H6 |
C15 |
70.7 |
68.7 |
H6 |
C13 |
C14 |
C15 |
250.5 |
252.5 |
C14 |
C13 |
H6 |
H5 |
215.3 |
214.3 |
H6 |
C13 |
C14 |
H7 |
360.0 |
360.0 |
H6 |
C13 |
C14 |
H8 |
141.0 |
145.0 |
H6 |
C13 |
C15 |
C14 |
109.5 |
107.5 |
C15 |
C13 |
H6 |
H5 |
144.6 |
145.7 |
H6 |
C13 |
C15 |
H9 |
3.2 |
0.0 |
H7 |
C14 |
C13 |
C15 |
109.5 |
107.5 |
C13 |
C14 |
H7 |
C15 |
289.4 |
291.4 |
H7 |
C14 |
C13 |
H5 |
219.0 |
215.0 |
H7 |
C14 |
C13 |
H6 |
360.0 |
360.0 |
C13 |
C14 |
H7 |
H8 |
144.7 |
145.7 |
C15 |
C14 |
H7 |
H8 |
215.3 |
214.3 |
H7 |
C14 |
C15 |
H9 |
356.8 |
0.0 |
H8 |
C14 |
C13 |
C15 |
250.5 |
252.5 |
C13 |
C14 |
H8 |
C15 |
70.6 |
68.6 |
H8 |
C14 |
C13 |
H5 |
0.0 |
360.0 |
H8 |
C14 |
C13 |
H6 |
141.0 |
145.0 |
C13 |
C14 |
H8 |
H7 |
215.3 |
214.3 |
C15 |
C14 |
H8 |
H7 |
144.7 |
145.7 |
H8 |
C14 |
C15 |
H9 |
215.8 |
215.0 |
C13 |
C15 |
H9 |
C14 |
67.4 |
68.6 |
H9 |
C15 |
C13 |
H5 |
144.2 |
145.0 |
H9 |
C15 |
C13 |
H6 |
3.2 |
0.0 |
H9 |
C15 |
C14 |
H7 |
356.8 |
0.0 |
H9 |
C15 |
C14 |
H8 |
215.8 |
215.0 |
H10 |
C16 |
C6 |
C4 |
269.7 |
270.3 |
C6 |
C16 |
H10 |
H11 |
120.0 |
120.0 |
C6 |
C16 |
H10 |
H12 |
240.0 |
240.0 |
H11 |
C16 |
H10 |
H12 |
120.0 |
120.0 |
H11 |
C16 |
C6 |
C4 |
29.7 |
30.3 |
C6 |
C16 |
H11 |
H10 |
240.0 |
240.0 |
C6 |
C16 |
H11 |
H12 |
120.0 |
120.0 |
H10 |
C16 |
H11 |
H12 |
240.0 |
240.0 |
H12 |
C16 |
C6 |
C4 |
149.8 |
150.3 |
C6 |
C16 |
H12 |
H10 |
120.0 |
120.0 |
C6 |
C16 |
H12 |
H11 |
240.0 |
240.0 |
H10 |
C16 |
H12 |
H11 |
120.0 |
120.0 |
C20 |
C19 |
H13 |
H14 |
120.0 |
120.0 |
C20 |
C19 |
H13 |
H15 |
240.0 |
240.0 |
H14 |
C19 |
H13 |
H15 |
120.0 |
120.0 |
C20 |
C19 |
H14 |
H13 |
240.0 |
240.0 |
C20 |
C19 |
H14 |
H15 |
120.0 |
120.1 |
H13 |
C19 |
H14 |
H15 |
240.0 |
240.1 |
C20 |
C19 |
H15 |
H13 |
120.1 |
120.0 |
C20 |
C19 |
H15 |
H14 |
240.0 |
240.0 |
H13 |
C19 |
H15 |
H14 |
120.0 |
119.9 |
H16 |
C20 |
C15 |
H9 |
190.9 |
274.3 |
H16 |
C20 |
C19 |
H13 |
297.6 |
60.0 |
H16 |
C20 |
C19 |
H14 |
57.6 |
180.0 |
H16 |
C20 |
C19 |
H15 |
177.5 |
300.0 |
H17 |
N23 |
C11 |
C18 |
5.5 |
0.0 |
C9 |
N23 |
H17 |
C11 |
180.0 |
180.0 |
H17 |
N23 |
C9 |
N21 |
358.3 |
180.0 |
H18 |
C17 |
C8 |
N21 |
360.0 |
264.8 |
C8 |
C17 |
H18 |
H19 |
120.0 |
120.0 |
C8 |
C17 |
H18 |
H20 |
240.0 |
240.0 |
H19 |
C17 |
H18 |
H20 |
120.0 |
120.0 |
H19 |
C17 |
C8 |
N21 |
120.0 |
24.8 |
C8 |
C17 |
H19 |
H18 |
240.0 |
239.9 |
C8 |
C17 |
H19 |
H20 |
120.0 |
120.0 |
H18 |
C17 |
H19 |
H20 |
240.0 |
240.1 |
H20 |
C17 |
C8 |
N21 |
240.0 |
144.8 |
C8 |
C17 |
H20 |
H18 |
120.0 |
120.0 |
C8 |
C17 |
H20 |
H19 |
240.0 |
240.0 |
H18 |
C17 |
H20 |
H19 |
120.0 |
120.0 |
C11 |
C18 |
H21 |
H22 |
120.0 |
120.0 |
C11 |
C18 |
H21 |
H23 |
240.0 |
240.0 |
H22 |
C18 |
H21 |
H23 |
120.0 |
119.9 |
C11 |
C18 |
H22 |
H21 |
240.0 |
240.0 |
C11 |
C18 |
H22 |
H23 |
120.0 |
120.0 |
H21 |
C18 |
H22 |
H23 |
240.0 |
240.0 |
C11 |
C18 |
H23 |
H21 |
120.0 |
120.1 |
C11 |
C18 |
H23 |
H22 |
240.0 |
240.0 |
H21 |
C18 |
H23 |
H22 |
120.0 |
119.9 |