PDB Chemical Component E6G
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for E6G
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O3' |
C3' |
1.409 |
1.429 |
| C5' |
C4' |
1.504 |
1.530 |
| C5' |
O5' |
1.413 |
1.429 |
| C4' |
C3' |
1.515 |
1.541 |
| C4' |
O4' |
1.451 |
1.439 |
| O2' |
C2' |
1.418 |
1.429 |
| C3' |
C2' |
1.513 |
1.548 |
| OP1 |
P |
1.499 |
1.480 |
| O5' |
P |
1.585 |
1.610 |
| C2' |
C1' |
1.518 |
1.550 |
| P |
OP2 |
1.499 |
1.610 |
| O4' |
C1' |
1.412 |
1.444 |
| C1' |
N9 |
1.468 |
1.465 |
| N9 |
C8 |
1.337 |
1.364 |
| N9 |
C4 |
1.321 |
1.372 |
| C8 |
N7 |
1.345 |
1.301 |
| C4 |
N3 |
1.344 |
1.329 |
| C4 |
C5 |
1.462 |
1.406 |
| N3 |
C2 |
1.347 |
1.323 |
| N7 |
C5 |
1.336 |
1.356 |
| C5 |
C6 |
1.469 |
1.403 |
| C2 |
N2 |
1.346 |
1.385 |
| C2 |
N1 |
1.351 |
1.327 |
| C6 |
N1 |
1.345 |
1.326 |
| C6 |
O6 |
1.369 |
1.355 |
| C61 |
O6 |
1.426 |
1.428 |
| C61 |
C62 |
1.510 |
1.530 |
| C1' |
H1 |
1.100 |
1.090 |
| C2' |
H2 |
1.100 |
1.091 |
| C3' |
H3 |
1.100 |
1.091 |
| C4' |
H4 |
1.100 |
1.090 |
| C5' |
H5 |
1.100 |
1.089 |
| C5' |
H6 |
1.100 |
1.091 |
| C8 |
H7 |
1.080 |
1.080 |
| N2 |
H8 |
1.000 |
0.970 |
| N2 |
H9 |
1.000 |
0.970 |
| O2' |
H10 |
0.950 |
0.968 |
| O3' |
H11 |
0.950 |
0.967 |
| OP2 |
H13 |
0.950 |
0.968 |
| C61 |
H14 |
1.100 |
1.090 |
| C61 |
H15 |
1.100 |
1.090 |
| C62 |
H16 |
1.100 |
1.090 |
| C62 |
H17 |
1.100 |
1.090 |
| C62 |
H18 |
1.100 |
1.091 |
| P |
OP3 |
1.603 |
1.610 |
| OP3 |
H12 |
0.950 |
0.967 |
Bond Angles for E6G
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3' |
C3' |
H3 |
109.5 |
110.4 |
| C5' |
C4' |
O4' |
109.6 |
110.0 |
| C5' |
C4' |
H4 |
109.0 |
110.0 |
| C5' |
O5' |
P |
121.8 |
123.0 |
| O5' |
C5' |
H5 |
109.2 |
109.5 |
| O5' |
C5' |
H6 |
109.1 |
109.4 |
| C4' |
C3' |
H3 |
108.1 |
110.5 |
| O4' |
C4' |
H4 |
109.7 |
109.7 |
| O2' |
C2' |
H2 |
113.5 |
110.8 |
| C3' |
C2' |
H2 |
111.9 |
110.9 |
| O5' |
P |
OP1 |
107.7 |
109.5 |
| OP1 |
P |
OP2 |
120.8 |
109.5 |
| OP1 |
P |
OP3 |
109.8 |
109.5 |
| O5' |
P |
OP2 |
106.3 |
109.5 |
| O5' |
P |
OP3 |
104.9 |
109.5 |
| C2' |
C1' |
N9 |
110.6 |
110.6 |
| C2' |
C1' |
H1 |
109.6 |
110.6 |
| P |
OP2 |
H13 |
109.5 |
114.0 |
| O4' |
C1' |
H1 |
111.2 |
110.6 |
| C1' |
N9 |
C8 |
126.5 |
126.3 |
| C1' |
N9 |
C4 |
125.2 |
126.2 |
| N9 |
C1' |
H1 |
110.3 |
110.6 |
| N9 |
C8 |
H7 |
124.2 |
125.0 |
| N7 |
C8 |
H7 |
124.2 |
125.0 |
| C5 |
C4 |
N3 |
119.1 |
119.1 |
| C4 |
C5 |
C6 |
117.7 |
118.3 |
| C5 |
C6 |
N1 |
117.4 |
118.6 |
| C5 |
C6 |
O6 |
120.5 |
120.7 |
| N1 |
C2 |
N2 |
118.8 |
118.9 |
| C2 |
N2 |
H8 |
109.5 |
119.9 |
| C2 |
N2 |
H9 |
109.5 |
120.0 |
| C2 |
N1 |
C6 |
122.0 |
121.2 |
| N1 |
C6 |
O6 |
122.0 |
120.7 |
| C62 |
C61 |
H14 |
109.4 |
109.5 |
| C62 |
C61 |
H15 |
109.4 |
109.5 |
| C61 |
C62 |
H16 |
109.5 |
109.5 |
| C61 |
C62 |
H17 |
109.5 |
109.5 |
| C61 |
C62 |
H18 |
109.4 |
109.4 |
| H5 |
C5' |
H6 |
109.5 |
109.5 |
| H8 |
N2 |
H9 |
109.4 |
120.0 |
| H14 |
C61 |
H15 |
109.5 |
109.5 |
| H16 |
C62 |
H17 |
109.4 |
109.5 |
| H16 |
C62 |
H18 |
109.5 |
109.4 |
| H17 |
C62 |
H18 |
109.5 |
109.5 |
| P |
OP3 |
H12 |
109.5 |
114.1 |
Torsion Angles for E6G
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4' |
C3' |
O3' |
H3 |
238.4 |
237.4 |
| O3' |
C3' |
C2' |
H2 |
284.7 |
216.2 |
| C5' |
C4' |
C3' |
H3 |
315.7 |
357.2 |
| O4' |
C4' |
C5' |
H4 |
120.1 |
121.0 |
| O5' |
C5' |
C4' |
O4' |
306.5 |
67.0 |
| O5' |
C5' |
C4' |
H4 |
186.4 |
306.1 |
| C5' |
O5' |
P |
OP1 |
301.8 |
305.0 |
| C5' |
O5' |
P |
OP2 |
171.0 |
65.0 |
| C5' |
O5' |
P |
OP3 |
58.7 |
185.0 |
| H5 |
C5' |
O5' |
H6 |
119.6 |
120.0 |
| O3' |
C3' |
C4' |
H3 |
122.3 |
122.6 |
| C4' |
C3' |
C2' |
H2 |
160.5 |
97.3 |
| C5' |
C4' |
O4' |
H4 |
240.4 |
238.9 |
| O4' |
C4' |
C3' |
H3 |
75.7 |
116.8 |
| C4' |
O4' |
C1' |
H1 |
128.2 |
78.7 |
| C3' |
C2' |
O2' |
H2 |
233.4 |
236.4 |
| O2' |
C2' |
C1' |
H1 |
323.2 |
36.6 |
| O2' |
C2' |
C3' |
H2 |
127.5 |
123.6 |
| C3' |
C2' |
C1' |
N9 |
85.6 |
155.5 |
| C3' |
C2' |
C1' |
H1 |
207.6 |
278.4 |
| O5' |
P |
OP1 |
OP2 |
237.8 |
120.0 |
| O5' |
P |
OP1 |
OP3 |
113.7 |
240.0 |
| OP1 |
P |
OP2 |
H13 |
0.0 |
180.0 |
| OP1 |
P |
OP3 |
H12 |
0.0 |
59.9 |
| P |
O5' |
C5' |
H5 |
61.2 |
60.0 |
| P |
O5' |
C5' |
H6 |
301.5 |
300.0 |
| OP1 |
P |
O5' |
OP2 |
130.8 |
240.0 |
| OP1 |
P |
O5' |
OP3 |
243.1 |
120.0 |
| O5' |
P |
OP2 |
H13 |
122.9 |
60.0 |
| O5' |
P |
OP3 |
H12 |
244.5 |
179.9 |
| O4' |
C1' |
C2' |
H1 |
120.5 |
118.6 |
| C2' |
C1' |
N9 |
C8 |
250.6 |
267.1 |
| C2' |
C1' |
N9 |
C4 |
68.6 |
87.2 |
| N9 |
C1' |
C2' |
H1 |
238.1 |
237.1 |
| O5' |
P |
OP2 |
OP1 |
122.9 |
240.0 |
| OP1 |
P |
OP2 |
OP3 |
125.8 |
240.0 |
| O5' |
P |
OP2 |
OP3 |
248.7 |
120.0 |
| C2' |
C1' |
O4' |
H1 |
240.5 |
241.4 |
| N9 |
C1' |
O4' |
H1 |
121.4 |
122.9 |
| C2' |
C1' |
N9 |
H1 |
121.5 |
122.9 |
| O4' |
C1' |
N9 |
H1 |
238.1 |
237.1 |
| C1' |
N9 |
C8 |
H7 |
358.5 |
0.1 |
| C1' |
N9 |
C8 |
C4 |
178.3 |
180.0 |
| C8 |
N9 |
C1' |
H1 |
129.1 |
144.2 |
| N7 |
C8 |
N9 |
H7 |
180.0 |
179.9 |
| C1' |
N9 |
C4 |
C8 |
181.7 |
180.0 |
| C4 |
N9 |
C1' |
H1 |
307.1 |
324.3 |
| C1' |
N9 |
C8 |
N7 |
178.5 |
180.0 |
| N9 |
C8 |
N7 |
H7 |
180.0 |
180.1 |
| C1' |
N9 |
C4 |
N3 |
1.8 |
360.0 |
| N3 |
C4 |
C5 |
C6 |
0.0 |
359.8 |
| C1' |
N9 |
C4 |
C5 |
181.4 |
180.0 |
| C4 |
C5 |
C6 |
N1 |
0.2 |
0.3 |
| C4 |
C5 |
C6 |
O6 |
179.6 |
180.0 |
| N3 |
C2 |
N2 |
H8 |
0.0 |
180.2 |
| N3 |
C2 |
N2 |
H9 |
120.0 |
0.2 |
| N7 |
C5 |
C6 |
O6 |
359.7 |
359.7 |
| C6 |
C5 |
C4 |
N3 |
0.0 |
359.8 |
| C2 |
N1 |
C6 |
C5 |
359.3 |
359.9 |
| N1 |
C6 |
C5 |
O6 |
180.5 |
180.3 |
| N2 |
C2 |
N1 |
C6 |
180.3 |
180.0 |
| H8 |
N2 |
C2 |
H9 |
240.0 |
180.0 |
| C5 |
C6 |
N1 |
C2 |
359.3 |
359.9 |
| N1 |
C2 |
N2 |
H8 |
180.7 |
0.0 |
| N1 |
C2 |
N2 |
H9 |
300.7 |
180.0 |
| C2 |
N1 |
C6 |
O6 |
179.9 |
180.3 |
| C5 |
C6 |
N1 |
O6 |
179.5 |
179.7 |
| C6 |
N1 |
C2 |
N2 |
180.3 |
180.0 |
| C5 |
C6 |
O6 |
N1 |
180.5 |
180.3 |
| H14 |
C61 |
C62 |
H15 |
120.0 |
120.0 |
| H16 |
C62 |
C61 |
H17 |
240.0 |
240.0 |
| H16 |
C62 |
C61 |
H18 |
120.0 |
119.9 |
| H17 |
C62 |
C61 |
H18 |
240.0 |
240.0 |
| C2' |
C1' |
H1 |
N9 |
237.9 |
237.1 |
| H1 |
C1' |
N9 |
C8 |
129.1 |
144.2 |
| H1 |
C1' |
N9 |
C4 |
307.1 |
324.3 |
| H2 |
C2' |
C1' |
N9 |
327.1 |
37.3 |
| H2 |
C2' |
C1' |
H1 |
89.0 |
160.2 |
| H3 |
C3' |
C2' |
H2 |
46.8 |
338.6 |
| C5' |
C4' |
H4 |
O4' |
120.0 |
121.1 |
| H4 |
C4' |
C3' |
H3 |
192.2 |
236.1 |
| H5 |
C5' |
C4' |
O4' |
66.7 |
187.1 |
| H5 |
C5' |
C4' |
H4 |
306.6 |
66.1 |
| H5 |
C5' |
O5' |
P |
61.2 |
60.0 |
| O5' |
C5' |
H5 |
H6 |
240.6 |
240.0 |
| H6 |
C5' |
C4' |
O4' |
186.4 |
307.1 |
| H6 |
C5' |
C4' |
H4 |
66.3 |
186.1 |
| H6 |
C5' |
O5' |
P |
301.5 |
300.0 |
| O5' |
C5' |
H6 |
H5 |
119.4 |
120.0 |
| C2 |
N2 |
H8 |
H9 |
120.0 |
180.0 |
| C2 |
N2 |
H9 |
H8 |
240.0 |
180.0 |
| H10 |
O2' |
C2' |
H2 |
306.6 |
56.3 |
| H11 |
O3' |
C3' |
H3 |
301.6 |
298.9 |
| C62 |
C61 |
H14 |
H15 |
240.1 |
240.0 |
| H14 |
C61 |
C62 |
H16 |
60.0 |
180.0 |
| H14 |
C61 |
C62 |
H17 |
179.9 |
300.0 |
| H14 |
C61 |
C62 |
H18 |
300.0 |
60.1 |
| C62 |
C61 |
H15 |
H14 |
119.9 |
120.0 |
| H15 |
C61 |
C62 |
H16 |
300.0 |
60.0 |
| H15 |
C61 |
C62 |
H17 |
60.0 |
180.0 |
| H15 |
C61 |
C62 |
H18 |
180.0 |
300.1 |
| H16 |
C62 |
C61 |
H14 |
60.0 |
180.0 |
| H16 |
C62 |
C61 |
H15 |
300.0 |
60.0 |
| C61 |
C62 |
H16 |
H17 |
120.0 |
120.0 |
| C61 |
C62 |
H16 |
H18 |
240.0 |
240.1 |
| H17 |
C62 |
H16 |
H18 |
120.0 |
120.0 |
| H17 |
C62 |
C61 |
H14 |
179.9 |
300.0 |
| H17 |
C62 |
C61 |
H15 |
60.0 |
180.0 |
| C61 |
C62 |
H17 |
H16 |
240.0 |
240.0 |
| C61 |
C62 |
H17 |
H18 |
120.0 |
120.0 |
| H16 |
C62 |
H17 |
H18 |
240.0 |
240.0 |
| H18 |
C62 |
C61 |
H14 |
300.0 |
60.1 |
| H18 |
C62 |
C61 |
H15 |
180.0 |
300.1 |
| C61 |
C62 |
H18 |
H16 |
120.0 |
120.0 |
| C61 |
C62 |
H18 |
H17 |
240.0 |
240.0 |
| H16 |
C62 |
H18 |
H17 |
120.0 |
120.0 |
| O5' |
P |
OP3 |
OP1 |
244.5 |
120.0 |
| OP1 |
P |
OP3 |
OP2 |
227.8 |
120.0 |
| O5' |
P |
OP3 |
OP2 |
112.3 |
240.0 |
| OP3 |
P |
OP2 |
H13 |
234.3 |
300.0 |