PDB Chemical Component E6C

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for E6C

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O1 C3 1.406 1.429
O1 HO1 0.950 0.967
C2 C3 1.525 1.529
C2 C16 1.555 1.508
C2 H21 1.114 1.089
C2 H22 1.115 1.090
C3 C4 1.519 1.507
C3 H3 1.115 1.089
C4 O5 1.208 1.213
C4 N6 1.348 1.346
N6 C7 1.394 1.465
N6 HN6 1.020 0.970
C7 C8 1.505 1.506
C7 C19 1.510 1.529
C7 H7 1.116 1.090
C8 O9 1.214 1.212
C8 N10 1.346 1.348
N10 C11 1.456 1.464
N10 HN1 1.021 0.970
C11 C12 1.552 1.530
C11 H111 1.115 1.090
C11 H112 1.115 1.089
C12 C13 1.558 1.530
C12 H121 1.115 1.090
C12 H122 1.115 1.090
C13 C14 1.544 1.530
C13 C15 1.608 1.529
C13 H13 1.115 1.091
C14 H141 1.115 1.090
C14 H142 1.115 1.090
C14 H143 1.115 1.089
C15 H151 1.115 1.090
C15 H152 1.115 1.090
C15 H153 1.115 1.090
C16 O17 1.205 1.208
C16 O18 1.204 1.342
O18 HO8 0.950 0.967
C19 C20 1.570 1.530
C19 H191 1.114 1.090
C19 H192 1.114 1.090
C20 C21 1.547 1.530
C20 C22 1.560 1.529
C20 H20 1.115 1.090
C21 H211 1.115 1.091
C21 H212 1.114 1.090
C21 H213 1.115 1.089
C22 H221 1.115 1.089
C22 H222 1.115 1.090
C22 H223 1.116 1.090

Bond Angles for E6C

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C3 O1 HO1 114.0 106.9
O1 C3 C2 114.0 109.4
O1 C3 C4 108.3 109.5
O1 C3 H3 110.9 109.5
C3 C2 C16 108.3 109.5
C3 C2 H21 112.7 109.5
C3 C2 H22 112.7 109.5
C2 C3 C4 118.3 109.4
C2 C3 H3 98.9 109.5
C16 C2 H21 112.6 109.4
C16 C2 H22 112.6 109.5
C2 C16 O17 116.6 120.0
C2 C16 O18 117.2 120.0
H21 C2 H22 97.9 109.5
C4 C3 H3 105.7 109.5
C3 C4 O5 123.3 120.0
C3 C4 N6 110.5 120.0
O5 C4 N6 126.0 120.0
C4 N6 C7 118.2 120.0
C4 N6 HN6 119.3 120.0
C7 N6 HN6 122.5 120.0
N6 C7 C8 113.3 109.5
N6 C7 C19 122.7 109.5
N6 C7 H7 98.3 109.4
C8 C7 C19 117.9 109.5
C8 C7 H7 108.1 109.5
C7 C8 O9 116.8 120.0
C7 C8 N10 120.3 120.1
C19 C7 H7 89.1 109.5
C7 C19 C20 106.2 109.5
C7 C19 H191 113.4 109.5
C7 C19 H192 113.4 109.5
O9 C8 N10 121.1 119.9
C8 N10 C11 120.1 120.1
C8 N10 HN1 116.1 119.9
C11 N10 HN1 123.8 120.0
N10 C11 C12 104.8 109.5
N10 C11 H111 114.0 109.5
N10 C11 H112 113.9 109.5
C12 C11 H111 114.0 109.5
C12 C11 H112 114.0 109.5
C11 C12 C13 116.8 109.5
C11 C12 H121 109.5 109.5
C11 C12 H122 109.5 109.5
H111 C11 H112 96.5 109.4
C13 C12 H121 109.6 109.4
C13 C12 H122 109.6 109.5
C12 C13 C14 110.6 109.5
C12 C13 C15 104.7 109.5
C12 C13 H13 111.4 109.4
H121 C12 H122 100.6 109.5
C14 C13 C15 108.1 109.5
C14 C13 H13 108.2 109.5
C13 C14 H141 110.7 109.5
C13 C14 H142 111.8 109.5
C13 C14 H143 111.8 109.5
C15 C13 H13 113.8 109.5
C13 C15 H151 104.6 109.4
C13 C15 H152 114.0 109.4
C13 C15 H153 114.0 109.5
H141 C14 H142 111.8 109.4
H141 C14 H143 111.8 109.5
H142 C14 H143 98.6 109.4
H151 C15 H152 114.1 109.5
H151 C15 H153 114.0 109.5
H152 C15 H153 96.4 109.5
O17 C16 O18 125.2 120.0
C16 O18 HO8 117.2 120.0
C20 C19 H191 113.5 109.4
C20 C19 H192 113.5 109.5
C19 C20 C21 110.0 109.5
C19 C20 C22 105.5 109.5
C19 C20 H20 110.6 109.4
H191 C19 H192 97.1 109.5
C21 C20 C22 105.6 109.5
C21 C20 H20 110.5 109.5
C20 C21 H211 109.9 109.5
C20 C21 H212 112.0 109.5
C20 C21 H213 112.0 109.5
C22 C20 H20 114.5 109.5
C20 C22 H221 105.6 109.5
C20 C22 H222 113.7 109.5
C20 C22 H223 113.7 109.5
H211 C21 H212 112.1 109.4
H211 C21 H213 112.0 109.4
H212 C21 H213 98.4 109.5
H221 C22 H222 113.7 109.4
H221 C22 H223 113.6 109.4
H222 C22 H223 96.8 109.5

Torsion Angles for E6C

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1 C3 C2 C16 300.8 300.0
O1 C3 C2 H21 66.0 60.0
O1 C3 C2 H22 175.6 180.0
C2 C3 O1 C4 226.1 240.1
C2 C3 O1 H3 110.5 120.0
C4 C3 O1 H3 244.4 239.9
O1 C3 C4 O5 147.9 0.1
O1 C3 C4 N6 332.6 180.1
HO1 O1 C3 C2 179.9 299.9
HO1 O1 C3 C4 313.9 59.9
HO1 O1 C3 H3 69.4 180.0
C2 C3 O1 HO1 179.9 299.9
O1 C3 C2 C4 129.1 120.0
O1 C3 C2 H3 242.3 240.0
C16 C2 C3 H21 234.8 240.0
C16 C2 C3 H22 125.2 120.0
C3 C2 C16 O17 293.0 360.0
C3 C2 C16 O18 102.3 180.1
H21 C2 C3 H22 250.4 239.9
C4 C3 C2 H3 113.3 120.0
C2 C3 C4 O5 279.5 120.0
C2 C3 C4 N6 104.2 300.0
C3 C2 C16 H21 125.2 120.0
C3 C2 C16 H22 234.8 240.0
C16 C2 C3 C4 171.8 180.0
C16 C2 C3 H3 58.5 60.0
H21 C2 C16 H22 109.5 120.0
O17 C16 C2 O18 190.7 179.9
C2 C16 O18 HO8 180.0 180.0
C3 C2 H21 C16 237.2 240.0
C3 C2 H21 H22 118.6 120.1
H21 C2 C3 C4 297.0 300.0
H21 C2 C3 H3 183.7 179.9
C16 C2 H21 H22 241.5 240.1
H21 C2 C16 O17 167.8 240.0
H21 C2 C16 O18 337.1 60.0
C3 C2 H22 C16 122.8 120.0
C3 C2 H22 H21 241.4 239.9
H22 C2 C3 C4 46.5 60.0
H22 C2 C3 H3 293.3 300.0
C16 C2 H22 H21 118.6 119.9
H22 C2 C16 O17 58.3 120.0
H22 C2 C16 O18 227.6 300.1
C4 C3 O1 HO1 313.9 59.9
O1 C3 C4 C2 228.4 240.1
O1 C3 C4 H3 118.9 120.0
C4 C3 C2 C16 171.8 180.0
C4 C3 C2 H21 297.0 300.0
C4 C3 C2 H22 46.5 60.0
C2 C3 C4 H3 250.5 240.0
O5 C4 C3 N6 175.2 180.0
C3 C4 N6 C7 171.1 182.2
C3 C4 N6 HN6 351.2 2.1
H3 C3 O1 HO1 69.4 180.0
O1 C3 H3 C2 120.0 119.9
O1 C3 H3 C4 242.8 239.9
H3 C3 C2 C16 58.5 60.0
H3 C3 C2 H21 183.7 179.9
H3 C3 C2 H22 293.3 300.0
C2 C3 H3 C4 122.8 120.0
H3 C3 C4 O5 29.0 240.0
H3 C3 C4 N6 213.7 60.0
O5 C4 C3 H3 29.0 240.0
C3 C4 O5 N6 185.5 180.0
O5 C4 N6 C7 356.0 2.2
O5 C4 N6 HN6 176.1 182.1
N6 C4 C3 H3 213.7 60.0
C3 C4 N6 O5 175.1 180.0
C7 N6 C4 HN6 179.9 180.1
C4 N6 C7 C8 209.1 241.5
C4 N6 C7 C19 57.3 121.4
C4 N6 C7 H7 323.0 1.4
C4 N6 C7 HN6 180.1 179.9
C8 C7 N6 C19 151.8 120.1
C8 C7 N6 H7 246.1 240.1
N6 C7 C8 O9 155.4 360.0
N6 C7 C8 N10 320.4 180.0
C19 C7 N6 H7 94.3 120.0
N6 C7 C19 C20 233.0 294.6
N6 C7 C19 H191 358.2 54.6
N6 C7 C19 H192 107.7 174.6
C4 N6 HN6 C7 179.9 180.1
HN6 N6 C7 C8 29.0 61.6
HN6 N6 C7 C19 237.2 301.5
HN6 N6 C7 H7 142.9 181.5
C8 C7 N6 HN6 29.0 61.6
N6 C7 C8 C19 206.7 239.9
N6 C7 C8 H7 107.9 119.9
C19 C7 C8 H7 261.2 240.0
C8 C7 C19 C20 82.4 174.6
C8 C7 C19 H191 207.6 294.6
C8 C7 C19 H192 317.1 54.5
O9 C8 C7 N10 195.0 180.0
C7 C8 N10 C11 241.6 180.0
C7 C8 N10 HN1 61.7 359.9
C19 C7 N6 HN6 237.2 301.5
N6 C7 C19 C8 150.6 120.0
N6 C7 C19 H7 260.7 240.0
C8 C7 C19 H7 110.1 120.0
C19 C7 C8 O9 308.7 120.1
C19 C7 C8 N10 113.7 300.1
C20 C19 C7 H191 234.7 240.0
C20 C19 C7 H192 125.2 120.0
C7 C19 C20 C21 263.7 176.6
C7 C19 C20 C22 17.2 296.6
C7 C19 C20 H20 141.5 56.6
H191 C19 C7 H192 250.5 240.0
H7 C7 N6 HN6 142.9 181.5
N6 C7 H7 C8 242.0 240.1
N6 C7 H7 C19 122.9 120.0
C8 C7 H7 C19 240.9 240.0
H7 C7 C8 O9 47.5 240.1
H7 C7 C8 N10 212.5 60.1
H7 C7 C19 C20 332.3 54.6
H7 C7 C19 H191 97.5 174.6
H7 C7 C19 H192 207.0 294.5
O9 C8 C7 C19 308.7 120.1
O9 C8 C7 H7 47.5 240.1
C7 C8 O9 N10 164.9 180.0
O9 C8 N10 C11 46.0 360.0
O9 C8 N10 HN1 226.1 179.9
N10 C8 C7 C19 113.7 300.1
N10 C8 C7 H7 212.5 60.1
C7 C8 N10 O9 195.6 180.0
C11 N10 C8 HN1 179.9 180.1
C8 N10 C11 C12 49.2 180.0
C8 N10 C11 H111 174.5 60.0
C8 N10 C11 H112 283.9 300.0
C8 N10 C11 HN1 180.1 179.9
C12 C11 N10 H111 234.7 120.0
C12 C11 N10 H112 125.3 240.0
N10 C11 C12 C13 210.7 180.0
N10 C11 C12 H121 336.0 60.0
N10 C11 C12 H122 85.4 300.0
H111 C11 N10 H112 250.6 120.0
C8 N10 HN1 C11 179.9 180.1
HN1 N10 C11 C12 229.1 0.0
HN1 N10 C11 H111 354.4 240.0
HN1 N10 C11 H112 103.8 120.1
C12 C11 N10 HN1 229.1 0.0
N10 C11 C12 H111 125.3 240.0
N10 C11 C12 H112 234.8 120.0
H111 C11 C12 H112 109.5 240.0
C13 C12 C11 H121 234.7 120.0
C13 C12 C11 H122 125.3 240.0
C11 C12 C13 C14 54.9 180.0
C11 C12 C13 C15 298.7 300.1
C11 C12 C13 H13 175.3 60.0
H121 C12 C11 H122 250.6 120.0
H111 C11 N10 HN1 354.4 240.0
N10 C11 H111 C12 239.8 120.0
N10 C11 H111 H112 119.8 240.0
C12 C11 H111 H112 240.1 120.0
H111 C11 C12 C13 85.4 300.0
H111 C11 C12 H121 210.7 180.0
H111 C11 C12 H122 320.1 60.0
H112 C11 N10 HN1 103.8 120.1
N10 C11 H112 C12 120.2 240.0
N10 C11 H112 H111 240.2 120.0
C12 C11 H112 H111 119.9 240.0
H112 C11 C12 C13 335.9 60.0
H112 C11 C12 H121 101.2 300.0
H112 C11 C12 H122 210.6 180.0
C13 C12 C11 H111 85.4 300.0
C13 C12 C11 H112 335.9 60.0
C11 C12 C13 H121 125.2 240.0
C11 C12 C13 H122 234.7 120.0
H121 C12 C13 H122 109.5 240.1
C14 C13 C12 C15 116.2 239.9
C14 C13 C12 H13 239.6 120.0
C12 C13 C14 H141 180.0 180.1
C12 C13 C14 H142 305.3 300.0
C12 C13 C14 H143 54.7 60.0
C15 C13 C12 H13 123.4 240.0
C12 C13 C15 H151 180.0 300.0
C12 C13 C15 H152 305.3 59.9
C12 C13 C15 H153 54.7 180.0
H121 C12 C11 H111 210.7 180.0
H121 C12 C11 H112 101.2 300.0
C11 C12 H121 C13 230.6 120.0
C11 C12 H121 H122 115.3 240.0
C13 C12 H121 H122 244.6 119.9
H121 C12 C13 C14 289.7 300.0
H121 C12 C13 C15 173.5 60.1
H121 C12 C13 H13 50.0 180.0
H122 C12 C11 H111 320.1 60.0
H122 C12 C11 H112 210.6 180.0
C11 C12 H122 C13 129.4 240.0
C11 C12 H122 H121 244.7 120.0
C13 C12 H122 H121 115.4 240.1
H122 C12 C13 C14 180.2 60.0
H122 C12 C13 C15 64.0 180.0
H122 C12 C13 H13 300.5 300.0
C14 C13 C12 H121 289.7 300.0
C14 C13 C12 H122 180.2 60.0
C12 C13 C14 C15 245.9 120.1
C12 C13 C14 H13 122.3 240.1
C15 C13 C14 H13 236.3 120.0
C14 C13 C15 H151 62.0 60.0
C14 C13 C15 H152 187.3 180.0
C14 C13 C15 H153 296.8 300.0
H141 C14 C13 H142 234.7 240.0
H141 C14 C13 H143 125.3 120.1
H142 C14 C13 H143 250.6 240.0
C15 C13 C12 H121 173.5 60.1
C15 C13 C12 H122 64.0 180.0
C12 C13 C15 C14 118.0 239.9
C12 C13 C15 H13 238.1 119.9
C14 C13 C15 H13 120.2 240.0
C15 C13 C14 H141 294.0 60.0
C15 C13 C14 H142 59.3 180.0
C15 C13 C14 H143 168.7 299.9
H151 C15 C13 H152 234.7 240.1
H151 C15 C13 H153 125.2 120.0
H152 C15 C13 H153 250.6 239.9
H13 C13 C12 H121 50.0 180.0
H13 C13 C12 H122 300.5 300.0
C12 C13 H13 C14 238.2 120.0
C12 C13 H13 C15 118.0 240.0
C14 C13 H13 C15 239.9 120.0
H13 C13 C14 H141 57.7 300.0
H13 C13 C14 H142 183.0 60.0
H13 C13 C14 H143 292.4 179.9
H13 C13 C15 H151 301.9 180.0
H13 C13 C15 H152 67.2 300.0
H13 C13 C15 H153 176.6 60.0
H141 C14 C13 C15 294.0 60.0
H141 C14 C13 H13 57.7 300.0
C13 C14 H141 H142 125.3 120.0
C13 C14 H141 H143 234.7 239.9
H142 C14 H141 H143 109.4 119.9
H142 C14 C13 C15 59.3 180.0
H142 C14 C13 H13 183.0 60.0
C13 C14 H142 H141 235.3 240.0
C13 C14 H142 H143 117.7 120.0
H141 C14 H142 H143 242.3 240.0
H143 C14 C13 C15 168.7 299.9
H143 C14 C13 H13 292.4 179.9
C13 C14 H143 H141 124.7 120.1
C13 C14 H143 H142 242.4 240.0
H141 C14 H143 H142 117.7 119.9
H151 C15 C13 H13 301.9 180.0
C13 C15 H151 H152 125.3 119.9
C13 C15 H151 H153 234.8 240.0
H152 C15 H151 H153 109.5 120.1
H152 C15 C13 H13 67.2 300.0
C13 C15 H152 H151 239.8 240.1
C13 C15 H152 H153 119.9 120.0
H151 C15 H152 H153 240.1 239.9
H153 C15 C13 H13 176.6 60.0
C13 C15 H153 H151 120.1 120.0
C13 C15 H153 H152 240.1 240.0
H151 C15 H153 H152 120.0 120.0
O17 C16 C2 H21 167.8 240.0
O17 C16 C2 H22 58.3 120.0
C2 C16 O17 O18 168.3 180.1
O17 C16 O18 HO8 348.3 0.1
O18 C16 C2 H21 337.1 60.0
O18 C16 C2 H22 227.6 300.1
C2 C16 O18 O17 191.7 179.9
C20 C19 C7 H7 332.3 54.6
C7 C19 C20 H191 125.2 120.0
C7 C19 C20 H192 234.8 239.9
H191 C19 C20 H192 109.5 120.0
C21 C20 C19 C22 246.5 240.0
C21 C20 C19 H20 122.2 120.0
C19 C20 C21 H211 180.0 180.0
C19 C20 C21 H212 305.3 300.0
C19 C20 C21 H213 54.8 60.1
C22 C20 C19 H20 235.7 240.0
C19 C20 C22 H221 180.0 306.4
C19 C20 C22 H222 305.3 66.3
C19 C20 C22 H223 54.8 186.4
H191 C19 C7 H7 97.5 174.6
C7 C19 H191 C20 238.8 240.0
C7 C19 H191 H192 119.4 120.0
C20 C19 H191 H192 240.6 240.0
H191 C19 C20 C21 138.5 56.6
H191 C19 C20 C22 252.0 176.6
H191 C19 C20 H20 16.2 296.6
H192 C19 C7 H7 207.0 294.5
C7 C19 H192 C20 121.2 120.1
C7 C19 H192 H191 240.6 240.0
C20 C19 H192 H191 119.4 119.9
H192 C19 C20 C21 28.9 296.6
H192 C19 C20 C22 142.4 56.7
H192 C19 C20 H20 266.7 176.7
C21 C20 C19 H191 138.5 56.6
C21 C20 C19 H192 28.9 296.6
C19 C20 C21 C22 113.4 120.0
C19 C20 C21 H20 237.7 240.1
C22 C20 C21 H20 124.3 120.1
C21 C20 C22 H221 296.5 66.4
C21 C20 C22 H222 61.7 186.3
C21 C20 C22 H223 171.2 306.4
H211 C21 C20 H212 234.7 240.0
H211 C21 C20 H213 125.2 119.9
H212 C21 C20 H213 250.5 239.9
C22 C20 C19 H191 252.0 176.6
C22 C20 C19 H192 142.4 56.7
C19 C20 C22 C21 243.5 240.0
C19 C20 C22 H20 121.8 120.0
C21 C20 C22 H20 238.3 240.0
C22 C20 C21 H211 66.6 60.0
C22 C20 C21 H212 191.8 180.0
C22 C20 C21 H213 301.3 300.1
H221 C22 C20 H222 234.7 240.0
H221 C22 C20 H223 125.2 120.0
H222 C22 C20 H223 250.5 240.0
H20 C20 C19 H191 16.2 296.6
H20 C20 C19 H192 266.7 176.7
C19 C20 H20 C21 121.9 120.0
C19 C20 H20 C22 241.0 240.0
C21 C20 H20 C22 119.1 120.1
H20 C20 C21 H211 302.3 299.9
H20 C20 C21 H212 67.6 59.9
H20 C20 C21 H213 177.0 180.0
H20 C20 C22 H221 58.2 186.4
H20 C20 C22 H222 183.5 306.4
H20 C20 C22 H223 293.0 66.4
H211 C21 C20 C22 66.6 60.0
H211 C21 C20 H20 302.3 299.9
C20 C21 H211 H212 125.3 120.0
C20 C21 H211 H213 234.8 240.0
H212 C21 H211 H213 109.5 120.0
H212 C21 C20 C22 191.8 180.0
H212 C21 C20 H20 67.6 59.9
C20 C21 H212 H211 235.9 240.0
C20 C21 H212 H213 117.9 120.1
H211 C21 H212 H213 242.0 240.1
H213 C21 C20 C22 301.3 300.1
H213 C21 C20 H20 177.0 180.0
C20 C21 H213 H211 124.0 120.0
C20 C21 H213 H212 242.0 239.9
H211 C21 H213 H212 118.0 119.9
H221 C22 C20 H20 58.2 186.4
C20 C22 H221 H222 125.3 120.0
C20 C22 H221 H223 234.7 240.0
H222 C22 H221 H223 109.4 120.0
H222 C22 C20 H20 183.5 306.4
C20 C22 H222 H221 239.2 240.0
C20 C22 H222 H223 119.6 120.0
H221 C22 H222 H223 240.5 240.0
H223 C22 C20 H20 293.0 66.4
C20 C22 H223 H221 120.8 120.0
C20 C22 H223 H222 240.4 240.0
H221 C22 H223 H222 119.6 119.9