PDB Chemical Component E65
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for E65
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.346 |
1.326 |
| N1 |
C6 |
1.380 |
1.323 |
| S7 |
C2 |
1.829 |
1.762 |
| C2 |
N3 |
1.332 |
1.325 |
| N3 |
C4 |
1.295 |
1.323 |
| C5 |
C4 |
1.404 |
1.386 |
| C4 |
C11 |
1.457 |
1.508 |
| C6 |
C5 |
1.390 |
1.386 |
| C5 |
H5 |
1.080 |
1.080 |
| C12 |
C6 |
1.511 |
1.507 |
| S7 |
C8 |
1.806 |
1.810 |
| C8 |
C9 |
1.510 |
1.507 |
| C8 |
H8 |
1.100 |
1.089 |
| C8 |
H8A |
1.100 |
1.091 |
| O10 |
C9 |
1.215 |
1.213 |
| C9 |
C13 |
1.505 |
1.472 |
| C11 |
H11 |
1.100 |
1.089 |
| C11 |
H11A |
1.100 |
1.090 |
| C11 |
H11B |
1.100 |
1.090 |
| C12 |
H12 |
1.100 |
1.090 |
| C12 |
H12A |
1.100 |
1.090 |
| C12 |
H12B |
1.100 |
1.089 |
| C13 |
C14 |
1.365 |
1.399 |
| C13 |
C18 |
1.417 |
1.398 |
| C14 |
C15 |
1.414 |
1.379 |
| C14 |
H14 |
1.080 |
1.080 |
| C15 |
C16 |
1.379 |
1.384 |
| C15 |
H15 |
1.080 |
1.080 |
| C17 |
C16 |
1.390 |
1.384 |
| C16 |
S19 |
1.798 |
1.762 |
| C18 |
C17 |
1.407 |
1.379 |
| C17 |
H17 |
1.080 |
1.080 |
| C18 |
H18 |
1.080 |
1.080 |
| N22 |
S19 |
1.687 |
1.656 |
| O20 |
S19 |
1.491 |
1.422 |
| S19 |
O21 |
1.461 |
1.421 |
| N22 |
HN22 |
1.000 |
0.969 |
| N22 |
HN2A |
1.000 |
0.970 |
Bond Angles for E65
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
122.1 |
120.7 |
| N1 |
C2 |
N3 |
113.8 |
121.6 |
| N1 |
C6 |
C5 |
121.6 |
119.2 |
| C2 |
N3 |
C4 |
128.7 |
120.7 |
| N3 |
C4 |
C11 |
113.3 |
120.4 |
| C5 |
C4 |
C11 |
127.3 |
120.4 |
| C4 |
C11 |
H11 |
109.5 |
109.5 |
| C4 |
C11 |
H11A |
109.4 |
109.4 |
| C4 |
C11 |
H11B |
109.4 |
109.4 |
| C6 |
C5 |
H5 |
122.8 |
120.7 |
| S7 |
C8 |
C9 |
105.6 |
109.5 |
| S7 |
C8 |
H8 |
110.8 |
109.5 |
| S7 |
C8 |
H8A |
110.8 |
109.4 |
| C9 |
C8 |
H8 |
110.8 |
109.5 |
| C9 |
C8 |
H8A |
110.8 |
109.5 |
| C8 |
C9 |
C13 |
123.5 |
120.0 |
| H8 |
C8 |
H8A |
108.2 |
109.5 |
| O10 |
C9 |
C13 |
117.9 |
120.0 |
| C9 |
C13 |
C14 |
114.7 |
120.2 |
| C9 |
C13 |
C18 |
122.8 |
120.2 |
| H11 |
C11 |
H11A |
109.5 |
109.5 |
| H11 |
C11 |
H11B |
109.4 |
109.5 |
| H11A |
C11 |
H11B |
109.5 |
109.4 |
| H12 |
C12 |
H12A |
109.4 |
109.5 |
| H12 |
C12 |
H12B |
109.5 |
109.5 |
| H12A |
C12 |
H12B |
109.5 |
109.4 |
| C14 |
C13 |
C18 |
122.4 |
119.7 |
| C13 |
C14 |
C15 |
119.5 |
119.8 |
| C13 |
C14 |
H14 |
120.3 |
120.1 |
| C13 |
C18 |
C17 |
117.0 |
119.8 |
| C13 |
C18 |
H18 |
121.5 |
120.1 |
| C15 |
C14 |
H14 |
120.3 |
120.1 |
| C14 |
C15 |
C16 |
119.0 |
120.2 |
| C14 |
C15 |
H15 |
120.5 |
119.9 |
| C16 |
C15 |
H15 |
120.5 |
119.9 |
| C15 |
C16 |
S19 |
117.2 |
119.8 |
| C17 |
C16 |
S19 |
121.4 |
119.9 |
| C16 |
S19 |
O21 |
106.4 |
106.4 |
| C18 |
C17 |
H17 |
119.8 |
119.9 |
| O20 |
S19 |
O21 |
121.9 |
123.2 |
| HN22 |
N22 |
HN2A |
109.5 |
120.0 |
Torsion Angles for E65
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
C5 |
0.4 |
0.1 |
| N1 |
C2 |
N3 |
C4 |
359.9 |
0.0 |
| C6 |
N1 |
C2 |
N3 |
359.5 |
360.0 |
| N1 |
C6 |
C5 |
H5 |
180.3 |
180.0 |
| N3 |
C2 |
N1 |
C6 |
359.5 |
360.0 |
| C2 |
N3 |
C4 |
C11 |
180.8 |
180.0 |
| C5 |
C4 |
N3 |
C11 |
180.0 |
179.9 |
| N3 |
C4 |
C11 |
H11 |
360.0 |
89.9 |
| N3 |
C4 |
C11 |
H11A |
120.0 |
210.0 |
| N3 |
C4 |
C11 |
H11B |
240.0 |
329.9 |
| N1 |
C6 |
C5 |
C4 |
0.3 |
359.9 |
| N3 |
C4 |
C5 |
C11 |
180.0 |
180.1 |
| C5 |
C4 |
C11 |
H11 |
180.0 |
270.0 |
| C5 |
C4 |
C11 |
H11A |
300.1 |
30.1 |
| C5 |
C4 |
C11 |
H11B |
60.1 |
150.0 |
| H11 |
C11 |
C4 |
H11A |
240.0 |
239.9 |
| H11 |
C11 |
C4 |
H11B |
120.0 |
120.0 |
| H11A |
C11 |
C4 |
H11B |
240.0 |
240.1 |
| C6 |
C5 |
C4 |
C11 |
179.1 |
180.0 |
| H5 |
C5 |
C4 |
C11 |
359.1 |
359.9 |
| C12 |
C6 |
C5 |
H5 |
0.0 |
0.0 |
| C9 |
C8 |
S7 |
H8 |
240.0 |
239.9 |
| C9 |
C8 |
S7 |
H8A |
120.0 |
119.9 |
| S7 |
C8 |
C9 |
C13 |
159.0 |
180.0 |
| H8 |
C8 |
S7 |
H8A |
240.0 |
240.0 |
| S7 |
C8 |
C9 |
H8 |
120.0 |
120.0 |
| S7 |
C8 |
C9 |
H8A |
240.0 |
240.1 |
| H8 |
C8 |
C9 |
H8A |
120.0 |
120.1 |
| O10 |
C9 |
C8 |
C13 |
186.8 |
180.0 |
| C8 |
C9 |
C13 |
C14 |
355.6 |
180.0 |
| C8 |
C9 |
C13 |
C18 |
179.2 |
359.7 |
| S7 |
C8 |
H8 |
C9 |
243.1 |
240.0 |
| S7 |
C8 |
H8 |
H8A |
121.6 |
119.9 |
| C9 |
C8 |
H8 |
H8A |
238.4 |
240.0 |
| H8 |
C8 |
C9 |
C13 |
39.0 |
60.0 |
| S7 |
C8 |
H8A |
C9 |
116.9 |
120.0 |
| S7 |
C8 |
H8A |
H8 |
238.4 |
240.0 |
| C9 |
C8 |
H8A |
H8 |
121.5 |
120.1 |
| H8A |
C8 |
C9 |
C13 |
279.0 |
299.9 |
| O10 |
C9 |
C8 |
H8 |
225.8 |
240.0 |
| O10 |
C9 |
C8 |
H8A |
105.8 |
119.9 |
| C8 |
C9 |
O10 |
C13 |
173.6 |
180.0 |
| O10 |
C9 |
C13 |
C14 |
168.9 |
0.0 |
| O10 |
C9 |
C13 |
C18 |
352.5 |
179.7 |
| C13 |
C9 |
C8 |
H8 |
39.0 |
60.0 |
| C13 |
C9 |
C8 |
H8A |
279.0 |
299.9 |
| C14 |
C13 |
C9 |
C18 |
176.4 |
180.3 |
| C9 |
C13 |
C14 |
C15 |
178.7 |
180.0 |
| C9 |
C13 |
C14 |
H14 |
358.6 |
360.0 |
| C9 |
C13 |
C18 |
C17 |
178.5 |
179.7 |
| C9 |
C13 |
C18 |
H18 |
358.4 |
0.1 |
| C4 |
C11 |
H11 |
H11A |
120.0 |
120.0 |
| C4 |
C11 |
H11 |
H11B |
240.0 |
240.0 |
| H11A |
C11 |
H11 |
H11B |
120.0 |
120.0 |
| C4 |
C11 |
H11A |
H11 |
240.0 |
239.9 |
| C4 |
C11 |
H11A |
H11B |
120.0 |
119.9 |
| H11 |
C11 |
H11A |
H11B |
240.0 |
240.0 |
| C4 |
C11 |
H11B |
H11 |
120.0 |
120.0 |
| C4 |
C11 |
H11B |
H11A |
240.0 |
240.1 |
| H11 |
C11 |
H11B |
H11A |
120.0 |
120.1 |
| H12A |
C12 |
H12 |
H12B |
120.0 |
120.0 |
| H12 |
C12 |
H12A |
H12B |
240.0 |
240.0 |
| H12 |
C12 |
H12B |
H12A |
120.0 |
120.0 |
| C9 |
C13 |
C14 |
C18 |
183.6 |
179.7 |
| C14 |
C13 |
C18 |
C17 |
2.4 |
359.5 |
| C14 |
C13 |
C18 |
H18 |
182.3 |
179.8 |
| C15 |
C14 |
C13 |
H14 |
180.0 |
180.0 |
| C13 |
C14 |
C15 |
C16 |
5.7 |
0.0 |
| C13 |
C14 |
C15 |
H15 |
185.7 |
180.0 |
| C9 |
C13 |
C18 |
C14 |
176.1 |
180.3 |
| C18 |
C13 |
C14 |
C15 |
355.1 |
0.2 |
| C18 |
C13 |
C14 |
H14 |
175.0 |
180.2 |
| C13 |
C18 |
C17 |
H17 |
179.3 |
180.3 |
| C15 |
C14 |
C13 |
C18 |
355.1 |
0.2 |
| C13 |
C14 |
C15 |
H14 |
180.0 |
180.0 |
| C16 |
C15 |
C14 |
H15 |
180.0 |
180.0 |
| C14 |
C15 |
C16 |
S19 |
175.2 |
180.0 |
| H14 |
C14 |
C13 |
C18 |
175.0 |
180.2 |
| C13 |
C14 |
H14 |
C15 |
180.0 |
180.0 |
| H14 |
C14 |
C15 |
C16 |
185.7 |
180.0 |
| H14 |
C14 |
C15 |
H15 |
5.7 |
0.0 |
| C16 |
C15 |
C14 |
H14 |
185.7 |
180.0 |
| C14 |
C15 |
C16 |
H15 |
180.0 |
180.0 |
| C17 |
C16 |
C15 |
S19 |
180.6 |
180.0 |
| C15 |
C16 |
S19 |
O21 |
70.3 |
336.4 |
| H15 |
C15 |
C14 |
H14 |
5.7 |
0.0 |
| C14 |
C15 |
H15 |
C16 |
180.0 |
180.0 |
| H15 |
C15 |
C16 |
S19 |
355.3 |
0.0 |
| C13 |
C18 |
C17 |
C16 |
359.4 |
0.5 |
| C17 |
C16 |
C15 |
H15 |
175.9 |
180.0 |
| C15 |
C16 |
C17 |
S19 |
179.3 |
180.0 |
| C17 |
C16 |
S19 |
O21 |
249.7 |
156.5 |
| S19 |
C16 |
C15 |
H15 |
355.3 |
0.0 |
| O20 |
S19 |
C16 |
O21 |
131.0 |
227.1 |
| C13 |
C18 |
C17 |
H18 |
180.0 |
180.3 |
| C18 |
C17 |
C16 |
S19 |
182.3 |
179.7 |
| H17 |
C17 |
C16 |
S19 |
2.3 |
360.0 |
| C13 |
C18 |
H18 |
C17 |
180.0 |
179.7 |
| H18 |
C18 |
C17 |
H17 |
359.4 |
360.0 |
| C16 |
S19 |
O20 |
O21 |
238.5 |
122.9 |