PDB Chemical Component E64

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for E64

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 O1 1.254 1.342
C1 O2 1.248 1.209
C1 C2 1.548 1.507
O2 HO2 0.950  
C2 C3 1.608 1.530
C2 H21 1.115 1.090
C2 H22 1.116 1.090
C3 O3 1.424 1.429
C3 C4 1.512 1.506
C3 H3 1.114 1.090
O3 HO3 0.949 0.967
C4 O4 1.227 1.213
C4 N1 1.337 1.348
N1 C6 1.464 1.465
N1 HN1 1.020 0.971
C6 C7 1.533 1.530
C6 C11 1.525 1.507
C6 H6 1.115 1.090
C7 C8 1.520 1.530
C7 H71 1.115 1.089
C7 H72 1.114 1.091
C8 C9 1.531 1.531
C8 C10 1.533 1.530
C8 H8 1.115 1.090
C9 H91 1.116 1.090
C9 H92 1.115 1.090
C9 H93 1.115 1.090
C10 H101 1.116 1.090
C10 H102 1.115 1.090
C10 H103 1.114 1.090
C11 O5 1.243 1.213
C11 N2 1.338 1.348
N2 C12 1.475 1.464
N2 HN2 1.020 0.970
C12 C13 1.531 1.531
C12 H121 1.114 1.090
C12 H122 1.115 1.090
C13 C14 1.550 1.530
C13 H131 1.115 1.090
C13 H132 1.114 1.090
C14 C15 1.532 1.531
C14 H141 1.115 1.090
C14 H142 1.116 1.090
C15 N3 1.476 1.465
C15 H151 1.114 1.090
C15 H152 1.115 1.090
N3 C16 1.333 1.376
N3 HN3 1.021 0.970
C16 N4 1.333 1.339
C16 N5 1.332 1.340
N4 HN41 1.019 0.970
N4 HN42 1.020 0.970
N5 HN51 1.021 0.969
N5 HN52 1.019 0.970

Bond Angles for E64

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1 C1 O2 122.2 120.0
O1 C1 C2 118.0 120.0
O2 C1 C2 119.6 120.0
C1 O2 HO2 122.2  
C1 C2 C3 113.6 109.5
C1 C2 H21 110.7 109.5
C1 C2 H22 110.7 109.4
C3 C2 H21 110.7 109.5
C3 C2 H22 110.7 109.4
C2 C3 O3 111.8 109.4
C2 C3 C4 109.4 109.5
C2 C3 H3 107.2 109.5
H21 C2 H22 99.6 109.5
O3 C3 C4 107.1 109.5
O3 C3 H3 109.5 109.4
C3 O3 HO3 111.8 106.8
C4 C3 H3 111.9 109.5
C3 C4 O4 121.3 120.0
C3 C4 N1 115.1 120.0
O4 C4 N1 123.5 120.0
C4 N1 C6 123.1 120.0
C4 N1 HN1 113.7 120.0
C6 N1 HN1 123.2 120.0
N1 C6 C7 111.9 109.5
N1 C6 C11 107.6 109.5
N1 C6 H6 108.7 109.4
C7 C6 C11 108.1 109.5
C7 C6 H6 108.1 109.5
C6 C7 C8 119.2 109.5
C6 C7 H71 108.8 109.4
C6 C7 H72 108.7 109.5
C11 C6 H6 112.5 109.5
C6 C11 O5 120.4 120.0
C6 C11 N2 113.5 120.0
C8 C7 H71 108.7 109.5
C8 C7 H72 108.7 109.4
C7 C8 C9 108.3 109.4
C7 C8 C10 109.6 109.4
C7 C8 H8 111.0 109.5
H71 C7 H72 101.3 109.5
C9 C8 C10 112.0 109.5
C9 C8 H8 108.5 109.5
C8 C9 H91 108.4 109.5
C8 C9 H92 112.6 109.4
C8 C9 H93 112.7 109.5
C10 C8 H8 107.3 109.5
C8 C10 H101 109.6 109.5
C8 C10 H102 112.1 109.5
C8 C10 H103 112.2 109.4
H91 C9 H92 112.6 109.5
H91 C9 H93 112.6 109.5
H92 C9 H93 97.8 109.5
H101 C10 H102 112.1 109.5
H101 C10 H103 112.2 109.5
H102 C10 H103 98.3 109.4
O5 C11 N2 126.1 120.0
C11 N2 C12 129.9 120.0
C11 N2 HN2 109.0 120.0
C12 N2 HN2 121.0 120.0
N2 C12 C13 115.9 109.5
N2 C12 H121 109.9 109.5
N2 C12 H122 109.8 109.5
C13 C12 H121 109.9 109.4
C13 C12 H122 109.9 109.5
C12 C13 C14 111.8 109.5
C12 C13 H131 111.4 109.4
C12 C13 H132 111.4 109.5
H121 C12 H122 100.4 109.5
C14 C13 H131 111.4 109.5
C14 C13 H132 111.4 109.5
C13 C14 C15 113.9 109.4
C13 C14 H141 110.6 109.5
C13 C14 H142 110.6 109.5
H131 C13 H132 99.0 109.5
C15 C14 H141 110.6 109.5
C15 C14 H142 110.6 109.5
C14 C15 N3 114.2 109.5
C14 C15 H151 110.4 109.5
C14 C15 H152 110.4 109.4
H141 C14 H142 99.7 109.5
N3 C15 H151 110.5 109.5
N3 C15 H152 110.5 109.4
C15 N3 C16 124.8 120.0
C15 N3 HN3 106.8 120.1
H151 C15 H152 99.9 109.5
C16 N3 HN3 106.8 120.0
N3 C16 N4 119.7 120.0
N3 C16 N5 120.9 120.0
N4 C16 N5 119.3 120.0
C16 N4 HN41 119.7 120.0
C16 N4 HN42 108.5 120.0
C16 N5 HN51 119.3 120.0
C16 N5 HN52 120.9 120.0
HN41 N4 HN42 108.6 120.0
HN51 N5 HN52 119.7 120.0

Torsion Angles for E64

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2 C1 O1 C2 184.8 180.0
O1 C1 O2 HO2 180.0  
O1 C1 C2 C3 139.9 180.0
O1 C1 C2 H21 265.2 60.0
O1 C1 C2 H22 14.6 300.0
O1 C1 O2 C2 175.1 180.0
O2 C1 C2 C3 315.2 0.0
O2 C1 C2 H21 80.5 239.9
O2 C1 C2 H22 189.9 120.0
O1 C1 C2 O2 184.7 180.0
C2 C1 O2 HO2 4.9  
C3 C2 C1 H21 234.7 120.1
C3 C2 C1 H22 125.3 240.0
C1 C2 C3 O3 288.2 295.0
C1 C2 C3 C4 169.7 175.0
C1 C2 C3 H3 48.2 54.9
H21 C2 C1 H22 250.6 120.0
HO2 O2 C1 C2 4.9  
C1 C2 C3 H21 125.3 240.0
C1 C2 C3 H22 234.7 120.0
H21 C2 C3 H22 109.4 240.0
O3 C3 C2 C4 118.4 120.0
O3 C3 C2 H3 240.0 240.1
C2 C3 O3 HO3 180.0 300.0
C4 C3 C2 H3 121.5 120.1
C2 C3 C4 O4 252.4 114.9
C2 C3 C4 N1 72.9 295.0
C1 C2 H21 C3 233.1 120.1
C1 C2 H21 H22 116.5 240.1
C3 C2 H21 H22 243.5 120.0
H21 C2 C3 O3 162.9 55.0
H21 C2 C3 C4 44.4 295.0
H21 C2 C3 H3 282.9 174.9
C1 C2 H22 C3 126.9 240.0
C1 C2 H22 H21 243.5 120.0
C3 C2 H22 H21 116.5 240.0
H22 C2 C3 O3 53.4 175.1
H22 C2 C3 C4 295.0 55.0
H22 C2 C3 H3 173.5 295.0
O3 C3 C2 H21 162.9 55.0
O3 C3 C2 H22 53.4 175.1
C2 C3 O3 C4 240.2 240.0
C2 C3 O3 H3 118.7 120.0
C4 C3 O3 H3 238.5 240.0
O3 C3 C4 O4 131.0 355.0
O3 C3 C4 N1 311.6 175.0
C4 C3 C2 H21 44.4 295.0
C4 C3 C2 H22 295.0 55.0
C2 C3 C4 O3 121.3 120.0
C2 C3 C4 H3 241.4 239.9
O3 C3 C4 H3 120.0 120.0
C4 C3 O3 HO3 299.8 60.0
O4 C4 C3 N1 179.4 180.0
C3 C4 N1 C6 176.5 180.0
C3 C4 N1 HN1 356.4 360.0
H3 C3 C2 H21 282.9 174.9
H3 C3 C2 H22 173.5 295.0
C2 C3 H3 O3 238.5 240.1
C2 C3 H3 C4 119.9 120.1
O3 C3 H3 C4 241.4 240.0
H3 C3 O3 HO3 61.3 180.0
H3 C3 C4 O4 11.0 235.0
H3 C3 C4 N1 191.6 55.1
HO3 O3 C3 C4 299.8 60.0
HO3 O3 C3 H3 61.3 180.0
O4 C4 C3 H3 11.0 235.0
C3 C4 O4 N1 180.6 180.0
O4 C4 N1 C6 357.1 0.1
O4 C4 N1 HN1 177.0 180.0
N1 C4 C3 H3 191.6 55.1
C3 C4 N1 O4 179.4 180.0
C6 N1 C4 HN1 180.0 180.0
C4 N1 C6 C7 143.1 85.0
C4 N1 C6 C11 261.7 205.0
C4 N1 C6 H6 23.8 325.0
C4 N1 C6 HN1 180.0 180.0
C7 C6 N1 C11 241.4 240.0
C7 C6 N1 H6 119.4 120.0
N1 C6 C7 C8 265.9 295.0
N1 C6 C7 H71 31.2 175.0
N1 C6 C7 H72 140.7 55.0
C11 C6 N1 H6 237.9 240.0
N1 C6 C11 O5 301.3 0.0
N1 C6 C11 N2 119.9 180.0
C4 N1 HN1 C6 180.0 180.0
HN1 N1 C6 C7 323.2 265.0
HN1 N1 C6 C11 81.7 25.0
HN1 N1 C6 H6 203.8 145.0
C7 C6 N1 HN1 323.2 265.0
N1 C6 C7 C11 118.2 120.0
N1 C6 C7 H6 240.3 240.0
C11 C6 C7 H6 122.0 120.0
C7 C6 C11 O5 62.3 120.0
C7 C6 C11 N2 240.9 299.9
C8 C7 C6 H71 234.8 120.0
C8 C7 C6 H72 125.2 240.0
C6 C7 C8 C9 186.5 175.0
C6 C7 C8 C10 309.0 295.0
C6 C7 C8 H8 67.4 55.0
H71 C7 C6 H72 250.5 120.0
C11 C6 N1 HN1 81.7 25.0
N1 C6 C11 C7 239.0 240.0
N1 C6 C11 H6 119.7 120.0
C7 C6 C11 H6 240.7 240.0
C11 C6 C7 C8 147.7 175.0
C11 C6 C7 H71 272.9 55.0
C11 C6 C7 H72 22.4 295.0
O5 C11 C6 N2 181.4 180.1
C6 C11 N2 C12 179.4 180.0
C6 C11 N2 HN2 359.4 0.1
H6 C6 N1 HN1 203.8 145.0
N1 C6 H6 C7 121.7 120.0
N1 C6 H6 C11 241.0 240.0
C7 C6 H6 C11 119.3 120.0
H6 C6 C7 C8 25.7 55.0
H6 C6 C7 H71 150.9 295.0
H6 C6 C7 H72 260.4 174.9
H6 C6 C11 O5 181.6 240.0
H6 C6 C11 N2 0.2 60.0
C8 C7 C6 C11 147.7 175.0
C8 C7 C6 H6 25.7 55.0
C6 C7 C8 H71 125.3 240.0
C6 C7 C8 H72 234.7 120.0
H71 C7 C8 H72 109.4 240.0
C9 C8 C7 C10 237.5 240.0
C9 C8 C7 H8 119.1 120.0
C7 C8 C9 H91 180.0 180.0
C7 C8 C9 H92 305.3 300.0
C7 C8 C9 H93 54.7 60.0
C10 C8 C7 H8 241.6 240.0
C7 C8 C10 H101 180.0 300.0
C7 C8 C10 H102 305.2 60.1
C7 C8 C10 H103 54.8 180.0
H71 C7 C6 C11 272.9 55.0
H71 C7 C6 H6 150.9 295.0
C6 C7 H71 C8 228.8 120.0
C6 C7 H71 H72 114.5 240.0
C8 C7 H71 H72 245.7 120.0
H71 C7 C8 C9 61.2 295.0
H71 C7 C8 C10 183.7 55.0
H71 C7 C8 H8 302.1 175.0
H72 C7 C6 C11 22.4 295.0
H72 C7 C6 H6 260.4 174.9
C6 C7 H72 C8 131.2 240.0
C6 C7 H72 H71 245.5 120.0
C8 C7 H72 H71 114.3 240.0
H72 C7 C8 C9 311.8 55.0
H72 C7 C8 C10 74.3 175.0
H72 C7 C8 H8 192.7 295.0
C9 C8 C7 H71 61.2 295.0
C9 C8 C7 H72 311.8 55.0
C7 C8 C9 C10 121.1 120.0
C7 C8 C9 H8 239.3 240.0
C10 C8 C9 H8 118.3 120.1
C9 C8 C10 H101 300.4 59.9
C9 C8 C10 H102 65.5 180.0
C9 C8 C10 H103 175.1 299.9
H91 C9 C8 H92 234.7 240.0
H91 C9 C8 H93 125.3 120.0
H92 C9 C8 H93 250.5 240.0
C10 C8 C7 H71 183.7 55.0
C10 C8 C7 H72 74.3 175.0
C7 C8 C10 C9 239.7 240.1
C7 C8 C10 H8 120.7 120.0
C9 C8 C10 H8 241.0 239.9
C10 C8 C9 H91 58.9 60.0
C10 C8 C9 H92 184.2 180.0
C10 C8 C9 H93 293.7 300.0
H101 C10 C8 H102 234.8 239.9
H101 C10 C8 H103 125.3 120.0
H102 C10 C8 H103 250.5 240.1
H8 C8 C7 H71 302.1 175.0
H8 C8 C7 H72 192.7 295.0
C7 C8 H8 C9 119.0 120.0
C7 C8 H8 C10 240.2 240.0
C9 C8 H8 C10 121.2 120.1
H8 C8 C9 H91 300.7 300.0
H8 C8 C9 H92 65.9 60.0
H8 C8 C9 H93 175.4 179.9
H8 C8 C10 H101 59.4 180.0
H8 C8 C10 H102 184.6 300.1
H8 C8 C10 H103 294.1 60.0
H91 C9 C8 C10 58.9 60.0
H91 C9 C8 H8 300.7 300.0
C8 C9 H91 H92 125.3 120.0
C8 C9 H91 H93 234.7 240.0
H92 C9 H91 H93 109.4 120.0
H92 C9 C8 C10 184.2 180.0
H92 C9 C8 H8 65.9 60.0
C8 C9 H92 H91 237.1 240.0
C8 C9 H92 H93 118.6 120.0
H91 C9 H92 H93 241.5 239.9
H93 C9 C8 C10 293.7 300.0
H93 C9 C8 H8 175.4 179.9
C8 C9 H93 H91 123.0 120.0
C8 C9 H93 H92 241.4 240.0
H91 C9 H93 H92 118.5 120.0
H101 C10 C8 H8 59.4 180.0
C8 C10 H101 H102 125.2 120.0
C8 C10 H101 H103 234.7 240.0
H102 C10 H101 H103 109.5 120.0
H102 C10 C8 H8 184.6 300.1
C8 C10 H102 H101 236.2 239.9
C8 C10 H102 H103 118.1 119.9
H101 C10 H102 H103 241.9 240.0
H103 C10 C8 H8 294.1 60.0
C8 C10 H103 H101 123.9 120.0
C8 C10 H103 H102 241.9 240.1
H101 C10 H103 H102 118.0 120.1
O5 C11 C6 H6 181.6 240.0
C6 C11 O5 N2 178.4 179.9
O5 C11 N2 C12 357.9 360.0
O5 C11 N2 HN2 177.9 180.0
N2 C11 C6 H6 0.2 60.0
C6 C11 N2 O5 181.5 180.1
C12 N2 C11 HN2 180.0 180.0
C11 N2 C12 C13 15.9 180.0
C11 N2 C12 H121 141.1 300.0
C11 N2 C12 H122 250.6 60.0
C11 N2 C12 HN2 180.0 180.0
C13 C12 N2 H121 234.7 240.1
C13 C12 N2 H122 125.2 120.0
N2 C12 C13 C14 241.3 180.0
N2 C12 C13 H131 6.6 300.0
N2 C12 C13 H132 116.0 60.0
H121 C12 N2 H122 250.5 240.0
C11 N2 HN2 C12 180.0 180.0
HN2 N2 C12 C13 195.8 0.0
HN2 N2 C12 H121 321.1 120.0
HN2 N2 C12 H122 70.6 240.0
C13 C12 N2 HN2 195.8 0.0
N2 C12 C13 H121 125.3 120.0
N2 C12 C13 H122 234.8 240.0
H121 C12 C13 H122 109.5 120.0
C14 C13 C12 H131 234.7 240.0
C14 C13 C12 H132 125.3 120.0
C12 C13 C14 C15 214.6 180.0
C12 C13 C14 H141 339.9 300.0
C12 C13 C14 H142 89.3 60.0
H131 C13 C12 H132 250.6 240.0
H121 C12 N2 HN2 321.1 120.0
N2 C12 H121 C13 231.4 240.0
N2 C12 H121 H122 115.7 120.0
C13 C12 H121 H122 244.3 240.0
H121 C12 C13 C14 116.0 60.0
H121 C12 C13 H131 241.3 180.0
H121 C12 C13 H132 350.7 300.0
H122 C12 N2 HN2 70.6 240.0
N2 C12 H122 C13 128.6 120.0
N2 C12 H122 H121 244.3 240.0
C13 C12 H122 H121 115.7 120.0
H122 C12 C13 C14 6.5 300.0
H122 C12 C13 H131 131.8 60.0
H122 C12 C13 H132 241.2 180.0
C14 C13 C12 H121 116.0 60.0
C14 C13 C12 H122 6.5 300.0
C12 C13 C14 H131 125.2 120.0
C12 C13 C14 H132 234.7 240.0
H131 C13 C14 H132 109.5 120.0
C15 C14 C13 H141 234.7 240.0
C15 C14 C13 H142 125.3 120.0
C13 C14 C15 N3 212.7 180.0
C13 C14 C15 H151 337.9 300.1
C13 C14 C15 H152 87.4 60.0
H141 C14 C13 H142 250.6 240.0
H131 C13 C12 H121 241.3 180.0
H131 C13 C12 H122 131.8 60.0
C12 C13 H131 C14 234.5 240.0
C12 C13 H131 H132 117.3 120.0
C14 C13 H131 H132 242.7 240.0
H131 C13 C14 C15 89.4 60.0
H131 C13 C14 H141 214.7 180.0
H131 C13 C14 H142 324.1 300.0
H132 C13 C12 H121 350.7 300.0
H132 C13 C12 H122 241.2 180.0
C12 C13 H132 C14 125.5 120.0
C12 C13 H132 H131 242.8 240.0
C14 C13 H132 H131 117.3 120.0
H132 C13 C14 C15 339.9 300.0
H132 C13 C14 H141 105.2 60.0
H132 C13 C14 H142 214.6 180.0
C15 C14 C13 H131 89.4 60.0
C15 C14 C13 H132 339.9 300.0
C13 C14 C15 H141 125.3 120.0
C13 C14 C15 H142 234.7 240.0
H141 C14 C15 H142 109.4 120.0
N3 C15 C14 H151 234.8 239.9
N3 C15 C14 H152 125.2 119.9
C14 C15 N3 C16 190.9 180.0
C14 C15 N3 HN3 65.6 0.0
H151 C15 C14 H152 250.5 240.0
H141 C14 C13 H131 214.7 180.0
H141 C14 C13 H132 105.2 60.0
C13 C14 H141 C15 232.8 240.0
C13 C14 H141 H142 116.4 120.0
C15 C14 H141 H142 243.6 240.0
H141 C14 C15 N3 87.4 60.0
H141 C14 C15 H151 212.6 180.0
H141 C14 C15 H152 322.1 300.0
H142 C14 C13 H131 324.1 300.0
H142 C14 C13 H132 214.6 180.0
C13 C14 H142 C15 127.2 120.0
C13 C14 H142 H141 243.6 240.0
C15 C14 H142 H141 116.4 120.0
H142 C14 C15 N3 337.9 300.0
H142 C14 C15 H151 103.2 60.1
H142 C14 C15 H152 212.7 180.0
N3 C15 C14 H141 87.4 60.0
N3 C15 C14 H142 337.9 300.0
C14 C15 N3 H151 125.2 120.0
C14 C15 N3 H152 234.8 240.1
H151 C15 N3 H152 109.5 120.0
C16 N3 C15 HN3 125.3 179.9
C15 N3 C16 N4 359.4 0.1
C15 N3 C16 N5 181.9 180.0
H151 C15 C14 H141 212.6 180.0
H151 C15 C14 H142 103.2 60.1
C14 C15 H151 N3 232.7 240.0
C14 C15 H151 H152 116.3 120.0
N3 C15 H151 H152 243.7 240.0
H151 C15 N3 C16 65.7 59.9
H151 C15 N3 HN3 300.4 240.0
H152 C15 C14 H141 322.1 300.0
H152 C15 C14 H142 212.7 180.0
C14 C15 H152 N3 127.3 119.9
C14 C15 H152 H151 243.7 240.0
N3 C15 H152 H151 116.3 120.1
H152 C15 N3 C16 316.1 299.9
H152 C15 N3 HN3 190.8 120.0
C16 N3 C15 H151 65.7 59.9
C16 N3 C15 H152 316.1 299.9
C15 N3 C16 HN3 234.7 180.1
N4 C16 N3 N5 177.5 180.0
N3 C16 N4 HN41 180.0 360.0
N3 C16 N4 HN42 54.7 180.0
N3 C16 N5 HN51 357.5 180.1
N3 C16 N5 HN52 180.0 359.9
HN3 N3 C15 H151 300.4 240.0
HN3 N3 C15 H152 190.8 120.0
C15 N3 HN3 C16 135.6 179.9
HN3 N3 C16 N4 124.7 180.0
HN3 N3 C16 N5 307.2 360.0
N4 C16 N3 HN3 124.7 180.0
N3 C16 N4 N5 182.5 180.0
N4 C16 N5 HN51 180.0 0.1
N4 C16 N5 HN52 2.5 179.9
HN41 N4 C16 HN42 125.3 180.0
N5 C16 N3 HN3 307.2 360.0
N3 C16 N5 N4 177.5 180.0
N5 C16 N4 HN41 357.5 180.0
N5 C16 N4 HN42 232.2 360.0
HN51 N5 C16 HN52 177.5 180.1
HN41 N4 C16 N5 357.5 180.0
C16 N4 HN41 HN42 234.8 180.0
HN42 N4 C16 N5 232.2 360.0
C16 N4 HN42 HN41 131.6 180.0
C16 N5 HN51 HN52 182.5 179.9
C16 N5 HN52 HN51 177.5 180.1