PDB Chemical Component E59
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for E59
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C6 |
1.328 |
1.361 |
| C2 |
N1 |
1.325 |
1.350 |
| C2 |
C3 |
1.389 |
1.406 |
| C3 |
C4 |
1.386 |
1.364 |
| C4 |
N5 |
1.324 |
1.331 |
| C4 |
C8 |
1.497 |
1.507 |
| C6 |
N5 |
1.328 |
1.320 |
| C6 |
S9 |
1.784 |
1.762 |
| O7 |
C2 |
1.233 |
1.220 |
| C10 |
S9 |
1.783 |
1.810 |
| C10 |
C11 |
1.487 |
1.507 |
| C11 |
C13 |
1.456 |
1.472 |
| O12 |
C11 |
1.239 |
1.213 |
| C13 |
C18 |
1.393 |
1.398 |
| C13 |
C14 |
1.382 |
1.399 |
| C14 |
C15 |
1.387 |
1.379 |
| C15 |
C16 |
1.388 |
1.385 |
| C16 |
S19 |
1.756 |
1.762 |
| C17 |
C16 |
1.384 |
1.384 |
| C18 |
C17 |
1.386 |
1.378 |
| S19 |
O21 |
1.512 |
1.420 |
| O20 |
S19 |
1.514 |
1.422 |
| N22 |
S19 |
1.735 |
1.656 |
| N1 |
H1 |
1.000 |
0.970 |
| C3 |
H3 |
1.080 |
1.080 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H8A |
1.100 |
1.090 |
| C8 |
H8B |
1.100 |
1.090 |
| C10 |
H10 |
1.100 |
1.090 |
| C10 |
H10A |
1.100 |
1.090 |
| C14 |
H14 |
1.080 |
1.080 |
| C15 |
H15 |
1.080 |
1.080 |
| C17 |
H17 |
1.080 |
1.080 |
| C18 |
H18 |
1.080 |
1.080 |
| N22 |
HN22 |
1.000 |
0.970 |
| N22 |
HN2A |
1.000 |
0.970 |
Bond Angles for E59
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
121.2 |
119.7 |
| N1 |
C6 |
N5 |
120.9 |
121.2 |
| N1 |
C6 |
S9 |
119.1 |
119.4 |
| C6 |
N1 |
H1 |
119.4 |
120.1 |
| C2 |
N1 |
H1 |
119.4 |
120.1 |
| C2 |
C3 |
C4 |
117.9 |
118.9 |
| C2 |
C3 |
H3 |
121.0 |
120.5 |
| C3 |
C4 |
N5 |
119.8 |
120.2 |
| C3 |
C4 |
C8 |
120.8 |
119.9 |
| C4 |
C3 |
H3 |
121.1 |
120.6 |
| N5 |
C4 |
C8 |
119.3 |
119.9 |
| C4 |
C8 |
H8 |
109.5 |
109.5 |
| C4 |
C8 |
H8A |
109.4 |
109.5 |
| C4 |
C8 |
H8B |
109.5 |
109.5 |
| C10 |
C11 |
C13 |
112.6 |
120.0 |
| C11 |
C10 |
H10 |
107.9 |
109.4 |
| C11 |
C10 |
H10A |
107.9 |
109.4 |
| O12 |
C11 |
C13 |
122.8 |
120.0 |
| C11 |
C13 |
C18 |
117.4 |
120.2 |
| C11 |
C13 |
C14 |
121.7 |
120.1 |
| C14 |
C13 |
C18 |
120.9 |
119.7 |
| C13 |
C18 |
C17 |
120.1 |
119.8 |
| C13 |
C18 |
H18 |
120.0 |
120.1 |
| C13 |
C14 |
C15 |
119.0 |
119.8 |
| C13 |
C14 |
H14 |
120.5 |
120.1 |
| C14 |
C15 |
C16 |
120.1 |
120.2 |
| C15 |
C14 |
H14 |
120.5 |
120.1 |
| C14 |
C15 |
H15 |
120.0 |
119.9 |
| C15 |
C16 |
S19 |
119.7 |
119.8 |
| C16 |
C15 |
H15 |
120.0 |
119.9 |
| C17 |
C16 |
S19 |
119.3 |
119.9 |
| C16 |
S19 |
O21 |
110.3 |
106.4 |
| C18 |
C17 |
H17 |
120.6 |
119.9 |
| O20 |
S19 |
O21 |
111.9 |
123.2 |
| H8 |
C8 |
H8A |
109.5 |
109.5 |
| H8 |
C8 |
H8B |
109.5 |
109.5 |
| H8A |
C8 |
H8B |
109.5 |
109.4 |
| H10 |
C10 |
H10A |
111.0 |
109.5 |
| HN22 |
N22 |
HN2A |
109.4 |
120.0 |
Torsion Angles for E59
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
H1 |
180.0 |
179.7 |
| C2 |
N1 |
C6 |
N5 |
0.2 |
359.9 |
| C2 |
N1 |
C6 |
S9 |
180.2 |
179.7 |
| C6 |
N1 |
C2 |
H1 |
180.0 |
180.3 |
| C3 |
C2 |
N1 |
C6 |
359.6 |
0.1 |
| C3 |
C2 |
N1 |
H1 |
179.6 |
179.7 |
| C2 |
C3 |
C4 |
N5 |
359.9 |
0.0 |
| C2 |
C3 |
C4 |
C8 |
179.7 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
| N5 |
C4 |
C3 |
C8 |
180.1 |
180.0 |
| C3 |
C4 |
C8 |
H8 |
180.1 |
90.0 |
| C3 |
C4 |
C8 |
H8A |
300.1 |
210.0 |
| C3 |
C4 |
C8 |
H8B |
60.1 |
330.0 |
| N1 |
C6 |
N5 |
C4 |
359.9 |
0.1 |
| C3 |
C4 |
N5 |
C8 |
179.9 |
180.0 |
| N5 |
C4 |
C3 |
H3 |
179.9 |
180.0 |
| N5 |
C4 |
C8 |
H8 |
360.0 |
269.9 |
| N5 |
C4 |
C8 |
H8A |
120.0 |
30.0 |
| N5 |
C4 |
C8 |
H8B |
240.0 |
149.9 |
| C3 |
C4 |
C8 |
N5 |
180.1 |
180.0 |
| C8 |
C4 |
C3 |
H3 |
359.7 |
360.0 |
| H8 |
C8 |
C4 |
H8A |
240.0 |
240.0 |
| H8 |
C8 |
C4 |
H8B |
120.0 |
120.0 |
| H8A |
C8 |
C4 |
H8B |
240.0 |
240.0 |
| N1 |
C6 |
N5 |
S9 |
179.9 |
179.8 |
| N5 |
C6 |
N1 |
H1 |
180.3 |
180.3 |
| C6 |
N5 |
C4 |
C8 |
180.2 |
180.0 |
| N1 |
C6 |
S9 |
N5 |
180.1 |
180.2 |
| S9 |
C6 |
N1 |
H1 |
0.2 |
0.0 |
| O7 |
C2 |
N1 |
H1 |
0.0 |
359.6 |
| O7 |
C2 |
C3 |
H3 |
359.9 |
0.0 |
| O12 |
C11 |
C10 |
C13 |
180.4 |
179.9 |
| C10 |
C11 |
C13 |
C18 |
6.0 |
180.0 |
| C10 |
C11 |
C13 |
C14 |
186.9 |
0.2 |
| H10 |
C10 |
C11 |
H10A |
120.0 |
119.9 |
| C13 |
C11 |
C10 |
H10 |
157.7 |
60.0 |
| C13 |
C11 |
C10 |
H10A |
37.7 |
300.0 |
| C14 |
C13 |
C11 |
C18 |
180.9 |
180.2 |
| C11 |
C13 |
C18 |
C17 |
180.7 |
179.7 |
| C11 |
C13 |
C18 |
H18 |
0.7 |
359.9 |
| C11 |
C13 |
C14 |
C15 |
179.3 |
180.0 |
| C11 |
C13 |
C14 |
H14 |
359.3 |
0.0 |
| C10 |
C11 |
O12 |
C13 |
179.6 |
180.1 |
| O12 |
C11 |
C10 |
H10 |
338.1 |
239.9 |
| O12 |
C11 |
C10 |
H10A |
218.1 |
120.0 |
| O12 |
C11 |
C13 |
C18 |
185.7 |
0.1 |
| O12 |
C11 |
C13 |
C14 |
6.5 |
180.3 |
| C11 |
C13 |
C18 |
C14 |
180.8 |
180.2 |
| C18 |
C13 |
C14 |
C15 |
0.2 |
0.2 |
| C18 |
C13 |
C14 |
H14 |
180.2 |
180.2 |
| C13 |
C18 |
C17 |
H17 |
179.8 |
180.2 |
| C11 |
C13 |
C14 |
C18 |
179.1 |
179.8 |
| C14 |
C13 |
C18 |
C17 |
359.9 |
359.5 |
| C14 |
C13 |
C18 |
H18 |
179.8 |
179.7 |
| C13 |
C14 |
C15 |
C16 |
0.0 |
0.0 |
| C15 |
C14 |
C13 |
H14 |
180.0 |
180.0 |
| C13 |
C14 |
C15 |
H15 |
180.1 |
180.0 |
| C15 |
C14 |
C13 |
C18 |
0.2 |
0.2 |
| C13 |
C14 |
C15 |
H14 |
180.0 |
180.0 |
| C14 |
C15 |
C16 |
S19 |
180.4 |
180.0 |
| C16 |
C15 |
C14 |
H15 |
180.0 |
180.0 |
| C16 |
C15 |
C14 |
H14 |
180.0 |
180.0 |
| C14 |
C15 |
C16 |
H15 |
180.0 |
180.0 |
| C17 |
C16 |
C15 |
S19 |
179.2 |
180.0 |
| C15 |
C16 |
S19 |
O21 |
257.3 |
336.4 |
| S19 |
C16 |
C15 |
H15 |
0.4 |
0.0 |
| O20 |
S19 |
C16 |
O21 |
121.8 |
227.1 |
| C13 |
C18 |
C17 |
C16 |
359.8 |
0.5 |
| C15 |
C16 |
C17 |
S19 |
180.8 |
180.0 |
| C17 |
C16 |
C15 |
H15 |
179.6 |
180.0 |
| C17 |
C16 |
S19 |
O21 |
78.1 |
156.4 |
| C13 |
C18 |
C17 |
H18 |
180.0 |
180.2 |
| C18 |
C17 |
C16 |
S19 |
179.6 |
179.7 |
| C16 |
S19 |
O20 |
O21 |
239.2 |
122.9 |
| C2 |
N1 |
H1 |
C6 |
180.0 |
180.3 |
| H1 |
N1 |
C6 |
N5 |
180.3 |
180.3 |
| H1 |
N1 |
C6 |
S9 |
0.2 |
0.0 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
| H3 |
C3 |
C4 |
N5 |
179.9 |
180.0 |
| H3 |
C3 |
C4 |
C8 |
359.7 |
360.0 |
| C4 |
C8 |
H8 |
H8A |
120.0 |
120.0 |
| C4 |
C8 |
H8 |
H8B |
240.0 |
240.0 |
| H8A |
C8 |
H8 |
H8B |
120.0 |
119.9 |
| C4 |
C8 |
H8A |
H8 |
240.0 |
240.0 |
| C4 |
C8 |
H8A |
H8B |
120.0 |
120.0 |
| H8 |
C8 |
H8A |
H8B |
240.0 |
240.1 |
| C4 |
C8 |
H8B |
H8 |
120.0 |
120.0 |
| C4 |
C8 |
H8B |
H8A |
240.0 |
240.0 |
| H8 |
C8 |
H8B |
H8A |
120.0 |
120.0 |
| H10 |
C10 |
C11 |
C13 |
157.7 |
60.0 |
| C11 |
C10 |
H10 |
H10A |
241.9 |
240.1 |
| H10A |
C10 |
C11 |
C13 |
37.7 |
300.0 |
| C11 |
C10 |
H10A |
H10 |
118.1 |
119.9 |
| H14 |
C14 |
C13 |
C18 |
180.2 |
180.2 |
| C13 |
C14 |
H14 |
C15 |
180.0 |
180.0 |
| H14 |
C14 |
C15 |
C16 |
180.0 |
180.0 |
| H14 |
C14 |
C15 |
H15 |
0.1 |
0.0 |
| C14 |
C15 |
H15 |
C16 |
180.0 |
180.0 |
| H15 |
C15 |
C14 |
H14 |
0.1 |
0.0 |
| H15 |
C15 |
C16 |
S19 |
0.4 |
0.0 |
| H17 |
C17 |
C16 |
S19 |
359.7 |
360.0 |
| C13 |
C18 |
H18 |
C17 |
180.0 |
179.8 |
| H18 |
C18 |
C17 |
H17 |
359.8 |
0.0 |