PDB Chemical Component E50
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for E50
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C6 |
1.378 |
1.323 |
| N1 |
C2 |
1.323 |
1.326 |
| S7 |
C2 |
1.748 |
1.762 |
| C2 |
N3 |
1.361 |
1.325 |
| N3 |
C4 |
1.378 |
1.323 |
| C5 |
C4 |
1.392 |
1.387 |
| C4 |
H4 |
1.080 |
1.080 |
| C6 |
C5 |
1.417 |
1.386 |
| C5 |
C11 |
1.527 |
1.507 |
| C6 |
H6 |
1.080 |
1.079 |
| S7 |
C8 |
1.807 |
1.810 |
| C8 |
C9 |
1.515 |
1.507 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H8A |
1.100 |
1.090 |
| O10 |
C9 |
1.276 |
1.213 |
| C9 |
C13 |
1.525 |
1.471 |
| C11 |
C12 |
1.562 |
1.530 |
| C11 |
H11 |
1.100 |
1.089 |
| C11 |
H11A |
1.100 |
1.091 |
| C12 |
H12 |
1.100 |
1.090 |
| C12 |
H12A |
1.100 |
1.090 |
| C12 |
H12B |
1.100 |
1.090 |
| C13 |
C18 |
1.400 |
1.399 |
| C13 |
C14 |
1.385 |
1.399 |
| C14 |
C15 |
1.392 |
1.378 |
| C14 |
H14 |
1.080 |
1.080 |
| C15 |
C16 |
1.402 |
1.385 |
| C15 |
S19 |
1.810 |
1.762 |
| C17 |
C16 |
1.368 |
1.386 |
| C16 |
CL21 |
1.716 |
1.736 |
| C18 |
C17 |
1.403 |
1.378 |
| C17 |
H17 |
1.080 |
1.080 |
| C18 |
H18 |
1.080 |
1.080 |
| N23 |
S19 |
1.580 |
1.656 |
| O22 |
S19 |
1.456 |
1.421 |
| S19 |
O20 |
1.446 |
1.421 |
| N23 |
HN23 |
1.000 |
0.970 |
| N23 |
HN2A |
1.000 |
0.970 |
Bond Angles for E50
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
116.6 |
120.8 |
| N1 |
C6 |
C5 |
123.9 |
119.2 |
| N1 |
C6 |
H6 |
118.0 |
120.5 |
| N1 |
C2 |
N3 |
122.4 |
121.6 |
| C2 |
N3 |
C4 |
122.5 |
120.7 |
| N3 |
C4 |
H4 |
121.1 |
120.4 |
| C5 |
C4 |
H4 |
121.1 |
120.4 |
| C6 |
C5 |
C11 |
119.4 |
120.7 |
| C5 |
C11 |
C12 |
112.1 |
109.5 |
| C5 |
C11 |
H11 |
108.6 |
109.5 |
| C5 |
C11 |
H11A |
108.6 |
109.5 |
| S7 |
C8 |
C9 |
113.0 |
109.5 |
| S7 |
C8 |
H8 |
108.3 |
109.5 |
| S7 |
C8 |
H8A |
108.3 |
109.4 |
| C9 |
C8 |
H8 |
108.3 |
109.5 |
| C9 |
C8 |
H8A |
108.3 |
109.5 |
| C8 |
C9 |
C13 |
118.8 |
120.0 |
| H8 |
C8 |
H8A |
110.6 |
109.5 |
| O10 |
C9 |
C13 |
122.3 |
120.0 |
| C9 |
C13 |
C18 |
116.8 |
120.2 |
| C9 |
C13 |
C14 |
123.6 |
120.2 |
| C12 |
C11 |
H11 |
108.6 |
109.5 |
| C12 |
C11 |
H11A |
108.6 |
109.5 |
| C11 |
C12 |
H12 |
109.5 |
109.4 |
| C11 |
C12 |
H12A |
109.5 |
109.5 |
| C11 |
C12 |
H12B |
109.5 |
109.5 |
| H11 |
C11 |
H11A |
110.3 |
109.5 |
| H12 |
C12 |
H12A |
109.5 |
109.4 |
| H12 |
C12 |
H12B |
109.5 |
109.4 |
| H12A |
C12 |
H12B |
109.5 |
109.6 |
| C14 |
C13 |
C18 |
119.6 |
119.7 |
| C13 |
C18 |
C17 |
119.8 |
119.8 |
| C13 |
C18 |
H18 |
120.1 |
120.0 |
| C13 |
C14 |
C15 |
121.3 |
119.8 |
| C13 |
C14 |
H14 |
119.3 |
120.1 |
| C15 |
C14 |
H14 |
119.3 |
120.0 |
| C14 |
C15 |
C16 |
117.7 |
120.2 |
| C14 |
C15 |
S19 |
118.7 |
119.9 |
| C16 |
C15 |
S19 |
123.2 |
119.9 |
| C15 |
C16 |
CL21 |
118.3 |
119.9 |
| C15 |
S19 |
O20 |
106.3 |
106.4 |
| C17 |
C16 |
CL21 |
119.4 |
119.8 |
| C18 |
C17 |
H17 |
120.4 |
119.9 |
| HN23 |
N23 |
HN2A |
109.5 |
120.0 |
Torsion Angles for E50
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
N1 |
C2 |
N3 |
359.3 |
0.0 |
| N1 |
C6 |
C5 |
C11 |
180.6 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
0.6 |
360.0 |
| C2 |
N1 |
C6 |
H6 |
180.6 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
1.6 |
360.0 |
| N3 |
C2 |
N1 |
C6 |
359.3 |
0.0 |
| C2 |
N3 |
C4 |
H4 |
177.7 |
179.9 |
| C5 |
C4 |
N3 |
H4 |
180.0 |
180.1 |
| N1 |
C6 |
C5 |
C4 |
358.7 |
0.1 |
| N3 |
C4 |
C5 |
H4 |
180.0 |
179.9 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
H4 |
182.1 |
180.0 |
| C6 |
C5 |
C11 |
C12 |
186.9 |
270.0 |
| C6 |
C5 |
C11 |
H11 |
306.9 |
30.0 |
| C6 |
C5 |
C11 |
H11A |
66.9 |
150.0 |
| C11 |
C5 |
C4 |
H4 |
0.1 |
0.1 |
| C12 |
C11 |
C5 |
H11 |
240.0 |
240.0 |
| C12 |
C11 |
C5 |
H11A |
120.0 |
120.0 |
| C5 |
C11 |
C12 |
H12 |
180.0 |
300.0 |
| C5 |
C11 |
C12 |
H12A |
300.0 |
60.0 |
| C5 |
C11 |
C12 |
H12B |
60.0 |
180.1 |
| H11 |
C11 |
C5 |
H11A |
240.0 |
240.0 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
C11 |
0.6 |
0.0 |
| C9 |
C8 |
S7 |
H8 |
240.0 |
240.0 |
| C9 |
C8 |
S7 |
H8A |
120.0 |
120.0 |
| S7 |
C8 |
C9 |
C13 |
217.7 |
180.0 |
| H8 |
C8 |
S7 |
H8A |
240.0 |
240.0 |
| S7 |
C8 |
C9 |
H8 |
120.0 |
120.0 |
| S7 |
C8 |
C9 |
H8A |
240.0 |
240.0 |
| H8 |
C8 |
C9 |
H8A |
120.0 |
120.0 |
| O10 |
C9 |
C8 |
C13 |
177.9 |
180.0 |
| C8 |
C9 |
C13 |
C18 |
142.4 |
359.9 |
| C8 |
C9 |
C13 |
C14 |
326.1 |
180.3 |
| S7 |
C8 |
H8 |
C9 |
237.1 |
240.0 |
| S7 |
C8 |
H8 |
H8A |
118.6 |
120.0 |
| C9 |
C8 |
H8 |
H8A |
241.4 |
240.0 |
| H8 |
C8 |
C9 |
C13 |
97.8 |
60.0 |
| S7 |
C8 |
H8A |
C9 |
122.9 |
120.0 |
| S7 |
C8 |
H8A |
H8 |
241.4 |
240.0 |
| C9 |
C8 |
H8A |
H8 |
118.6 |
120.0 |
| H8A |
C8 |
C9 |
C13 |
337.7 |
300.0 |
| O10 |
C9 |
C8 |
H8 |
275.6 |
240.0 |
| O10 |
C9 |
C8 |
H8A |
155.6 |
120.0 |
| C8 |
C9 |
O10 |
C13 |
182.2 |
180.0 |
| O10 |
C9 |
C13 |
C18 |
324.6 |
180.0 |
| O10 |
C9 |
C13 |
C14 |
148.3 |
0.3 |
| C13 |
C9 |
C8 |
H8 |
97.8 |
60.0 |
| C13 |
C9 |
C8 |
H8A |
337.7 |
300.0 |
| C14 |
C13 |
C9 |
C18 |
183.7 |
180.3 |
| C9 |
C13 |
C18 |
C17 |
181.4 |
179.8 |
| C9 |
C13 |
C18 |
H18 |
1.4 |
0.1 |
| C9 |
C13 |
C14 |
C15 |
180.6 |
179.9 |
| C9 |
C13 |
C14 |
H14 |
0.5 |
360.0 |
| C5 |
C11 |
C12 |
H11 |
120.0 |
120.0 |
| C5 |
C11 |
C12 |
H11A |
240.0 |
240.0 |
| H11 |
C11 |
C12 |
H11A |
120.0 |
120.0 |
| H12 |
C12 |
C11 |
H12A |
240.0 |
240.0 |
| H12 |
C12 |
C11 |
H12B |
120.0 |
119.9 |
| H12A |
C12 |
C11 |
H12B |
240.0 |
239.9 |
| C5 |
C11 |
H11 |
C12 |
237.9 |
240.0 |
| C5 |
C11 |
H11 |
H11A |
118.9 |
120.0 |
| C12 |
C11 |
H11 |
H11A |
241.1 |
240.0 |
| H11 |
C11 |
C12 |
H12 |
60.0 |
180.0 |
| H11 |
C11 |
C12 |
H12A |
180.0 |
299.9 |
| H11 |
C11 |
C12 |
H12B |
300.0 |
60.0 |
| C5 |
C11 |
H11A |
C12 |
122.1 |
120.0 |
| C5 |
C11 |
H11A |
H11 |
241.1 |
240.0 |
| C12 |
C11 |
H11A |
H11 |
118.9 |
120.0 |
| H11A |
C11 |
C12 |
H12 |
300.0 |
60.0 |
| H11A |
C11 |
C12 |
H12A |
60.0 |
179.9 |
| H11A |
C11 |
C12 |
H12B |
180.0 |
300.1 |
| H12 |
C12 |
C11 |
H11 |
60.0 |
180.0 |
| H12 |
C12 |
C11 |
H11A |
300.0 |
60.0 |
| C11 |
C12 |
H12 |
H12A |
120.0 |
120.0 |
| C11 |
C12 |
H12 |
H12B |
240.0 |
240.1 |
| H12A |
C12 |
H12 |
H12B |
120.0 |
120.1 |
| H12A |
C12 |
C11 |
H11 |
180.0 |
299.9 |
| H12A |
C12 |
C11 |
H11A |
60.0 |
179.9 |
| C11 |
C12 |
H12A |
H12 |
240.0 |
240.0 |
| C11 |
C12 |
H12A |
H12B |
120.0 |
120.0 |
| H12 |
C12 |
H12A |
H12B |
240.0 |
240.0 |
| H12B |
C12 |
C11 |
H11 |
300.0 |
60.0 |
| H12B |
C12 |
C11 |
H11A |
180.0 |
300.1 |
| C11 |
C12 |
H12B |
H12 |
120.0 |
119.9 |
| C11 |
C12 |
H12B |
H12A |
240.0 |
239.9 |
| H12 |
C12 |
H12B |
H12A |
120.0 |
120.0 |
| C9 |
C13 |
C18 |
C14 |
183.5 |
180.3 |
| C18 |
C13 |
C14 |
C15 |
4.4 |
0.3 |
| C18 |
C13 |
C14 |
H14 |
184.3 |
180.3 |
| C13 |
C18 |
C17 |
H17 |
178.8 |
180.3 |
| C9 |
C13 |
C14 |
C18 |
176.2 |
179.7 |
| C14 |
C13 |
C18 |
C17 |
357.8 |
359.4 |
| C14 |
C13 |
C18 |
H18 |
177.9 |
179.7 |
| C15 |
C14 |
C13 |
H14 |
180.0 |
180.0 |
| C13 |
C14 |
C15 |
C16 |
356.9 |
360.0 |
| C13 |
C14 |
C15 |
S19 |
170.2 |
180.0 |
| C15 |
C14 |
C13 |
C18 |
4.4 |
0.3 |
| C13 |
C14 |
C15 |
H14 |
180.0 |
180.0 |
| C16 |
C15 |
C14 |
S19 |
186.8 |
180.0 |
| C14 |
C15 |
C16 |
CL21 |
180.7 |
180.0 |
| C14 |
C15 |
S19 |
O20 |
122.9 |
228.6 |
| H14 |
C14 |
C13 |
C18 |
184.3 |
180.3 |
| C13 |
C14 |
H14 |
C15 |
180.0 |
180.0 |
| H14 |
C14 |
C15 |
C16 |
177.0 |
180.0 |
| H14 |
C14 |
C15 |
S19 |
350.2 |
360.0 |
| C16 |
C15 |
C14 |
H14 |
177.0 |
180.0 |
| C14 |
C15 |
C16 |
S19 |
172.9 |
180.0 |
| C16 |
C15 |
S19 |
O20 |
295.7 |
48.6 |
| C17 |
C16 |
C15 |
CL21 |
178.9 |
180.0 |
| S19 |
C15 |
C14 |
H14 |
350.2 |
360.0 |
| C14 |
C15 |
S19 |
C16 |
187.2 |
180.0 |
| S19 |
C15 |
C16 |
CL21 |
7.8 |
360.0 |
| C13 |
C18 |
C17 |
C16 |
358.8 |
0.6 |
| C17 |
C16 |
C15 |
S19 |
186.7 |
180.0 |
| C15 |
C16 |
C17 |
CL21 |
181.1 |
180.0 |
| CL21 |
C16 |
C15 |
S19 |
7.8 |
360.0 |
| C13 |
C18 |
C17 |
H18 |
180.0 |
180.3 |
| C18 |
C17 |
C16 |
CL21 |
181.3 |
179.7 |
| H17 |
C17 |
C16 |
CL21 |
1.4 |
0.0 |
| C13 |
C18 |
H18 |
C17 |
180.0 |
179.7 |
| H18 |
C18 |
C17 |
H17 |
358.8 |
0.0 |