PDB Chemical Component E4K
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for E4K
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O2 |
C28 |
1.300 |
1.215 |
O1 |
C28 |
1.229 |
1.349 |
C |
C1 |
1.509 |
1.507 |
C28 |
C13 |
1.466 |
1.469 |
C16 |
C17 |
1.521 |
1.529 |
C16 |
C15 |
1.518 |
1.530 |
C2 |
C1 |
1.397 |
1.380 |
C2 |
C3 |
1.389 |
1.384 |
C13 |
N |
1.375 |
1.382 |
C13 |
C14 |
1.382 |
1.360 |
C1 |
C6 |
1.413 |
1.394 |
C17 |
O |
1.443 |
1.429 |
N |
C12 |
1.373 |
1.373 |
O |
C18 |
1.375 |
1.359 |
C14 |
C15 |
1.507 |
1.507 |
C14 |
C11 |
1.443 |
1.415 |
C3 |
C4 |
1.378 |
1.383 |
C12 |
C11 |
1.409 |
1.407 |
C12 |
C7 |
1.408 |
1.403 |
C18 |
C19 |
1.394 |
1.385 |
C18 |
C23 |
1.407 |
1.394 |
C6 |
C7 |
1.495 |
1.483 |
C6 |
C5 |
1.400 |
1.394 |
C11 |
C10 |
1.398 |
1.401 |
C19 |
C20 |
1.389 |
1.382 |
C24 |
C23 |
1.514 |
1.507 |
C24 |
C25 |
1.529 |
1.526 |
C7 |
C8 |
1.398 |
1.389 |
C23 |
C22 |
1.412 |
1.375 |
C4 |
C5 |
1.386 |
1.380 |
C20 |
C21 |
1.387 |
1.379 |
C10 |
C9 |
1.391 |
1.365 |
C8 |
C9 |
1.388 |
1.387 |
C25 |
C26 |
1.513 |
1.533 |
C22 |
C21 |
1.395 |
1.390 |
C22 |
C27 |
1.510 |
1.506 |
C26 |
C27 |
1.521 |
1.528 |
C2 |
H1 |
1.080 |
1.080 |
C3 |
H2 |
1.080 |
1.079 |
C8 |
H3 |
1.080 |
1.079 |
C9 |
H4 |
1.080 |
1.080 |
C10 |
H5 |
1.080 |
1.080 |
C15 |
H6 |
1.099 |
1.090 |
C15 |
H7 |
1.100 |
1.090 |
C16 |
H8 |
1.100 |
1.090 |
C16 |
H9 |
1.100 |
1.090 |
C19 |
H10 |
1.080 |
1.080 |
C20 |
H11 |
1.080 |
1.081 |
C21 |
H12 |
1.080 |
1.080 |
C24 |
H13 |
1.100 |
1.090 |
C24 |
H14 |
1.100 |
1.089 |
C27 |
H15 |
1.100 |
1.090 |
C27 |
H16 |
1.100 |
1.090 |
O1 |
H17 |
0.950 |
0.967 |
N |
H18 |
1.000 |
0.970 |
C5 |
H19 |
1.080 |
1.080 |
C4 |
H20 |
1.080 |
1.079 |
C |
H21 |
1.100 |
1.090 |
C |
H22 |
1.100 |
1.090 |
C |
H23 |
1.100 |
1.090 |
C17 |
H24 |
1.100 |
1.089 |
C17 |
H25 |
1.100 |
1.090 |
C25 |
H26 |
1.100 |
1.090 |
C25 |
H27 |
1.100 |
1.090 |
C26 |
H28 |
1.100 |
1.090 |
C26 |
H29 |
1.100 |
1.090 |
Bond Angles for E4K
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C28 |
O1 |
H17 |
109.5 |
117.0 |
C28 |
C13 |
N |
119.0 |
125.5 |
C16 |
C17 |
O |
110.3 |
109.5 |
C17 |
C16 |
H8 |
108.9 |
109.5 |
C17 |
C16 |
H9 |
108.9 |
109.5 |
C16 |
C17 |
H24 |
109.3 |
109.5 |
C16 |
C17 |
H25 |
109.3 |
109.5 |
C16 |
C15 |
H6 |
108.4 |
109.4 |
C16 |
C15 |
H7 |
108.4 |
109.5 |
C2 |
C1 |
C6 |
118.1 |
119.9 |
C2 |
C3 |
C4 |
120.1 |
120.2 |
C3 |
C2 |
H1 |
119.3 |
119.9 |
C2 |
C3 |
H2 |
119.9 |
119.9 |
C14 |
C13 |
N |
109.4 |
109.1 |
C13 |
N |
H18 |
125.5 |
125.6 |
C13 |
C14 |
C15 |
127.9 |
126.1 |
C1 |
C6 |
C7 |
121.9 |
120.1 |
C1 |
C6 |
C5 |
119.8 |
119.8 |
C17 |
O |
C18 |
118.9 |
117.0 |
O |
C17 |
H24 |
109.2 |
109.5 |
O |
C17 |
H25 |
109.3 |
109.4 |
O |
C18 |
C23 |
115.0 |
119.8 |
C14 |
C15 |
H6 |
108.5 |
109.4 |
C14 |
C15 |
H7 |
108.5 |
109.5 |
C3 |
C4 |
C5 |
120.0 |
120.1 |
C4 |
C3 |
H2 |
120.0 |
119.8 |
C3 |
C4 |
H20 |
120.0 |
120.0 |
C18 |
C19 |
H10 |
120.2 |
120.1 |
C24 |
C23 |
C18 |
119.6 |
117.7 |
C6 |
C5 |
H19 |
119.7 |
120.0 |
C11 |
C10 |
H5 |
120.0 |
120.0 |
C19 |
C20 |
C21 |
120.3 |
119.9 |
C20 |
C19 |
H10 |
120.2 |
120.2 |
C19 |
C20 |
H11 |
119.9 |
120.1 |
C23 |
C24 |
C25 |
113.6 |
110.7 |
C23 |
C24 |
H13 |
108.4 |
109.2 |
C23 |
C24 |
H14 |
108.4 |
109.2 |
C24 |
C25 |
C26 |
112.1 |
108.5 |
C25 |
C24 |
H13 |
108.5 |
108.9 |
C25 |
C24 |
H14 |
108.5 |
109.6 |
C24 |
C25 |
H26 |
108.8 |
109.7 |
C24 |
C25 |
H27 |
108.8 |
109.7 |
C7 |
C8 |
C9 |
120.5 |
120.4 |
C7 |
C8 |
H3 |
119.8 |
119.7 |
C4 |
C5 |
H19 |
119.8 |
120.1 |
C21 |
C20 |
H11 |
119.9 |
120.1 |
C20 |
C21 |
H12 |
119.5 |
119.7 |
C10 |
C9 |
H4 |
119.6 |
119.7 |
C9 |
C8 |
H3 |
119.7 |
119.8 |
C8 |
C9 |
H4 |
119.6 |
119.5 |
C26 |
C25 |
H26 |
108.8 |
109.9 |
C26 |
C25 |
H27 |
108.8 |
109.3 |
C25 |
C26 |
H28 |
108.7 |
109.7 |
C25 |
C26 |
H29 |
108.7 |
109.7 |
C22 |
C21 |
H12 |
119.6 |
119.7 |
C22 |
C27 |
H15 |
108.4 |
109.3 |
C22 |
C27 |
H16 |
108.4 |
109.2 |
C26 |
C27 |
H15 |
108.4 |
109.3 |
C26 |
C27 |
H16 |
108.4 |
109.2 |
H6 |
C15 |
H7 |
109.5 |
109.5 |
H8 |
C16 |
H9 |
109.5 |
109.4 |
H13 |
C24 |
H14 |
109.5 |
109.2 |
H15 |
C27 |
H16 |
109.5 |
109.2 |
H21 |
C |
H22 |
109.5 |
109.5 |
H21 |
C |
H23 |
109.5 |
109.5 |
H22 |
C |
H23 |
109.4 |
109.5 |
H24 |
C17 |
H25 |
109.5 |
109.5 |
H26 |
C25 |
H27 |
109.5 |
109.7 |
H28 |
C26 |
H29 |
109.5 |
109.8 |
Torsion Angles for E4K
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
C28 |
O1 |
H17 |
0.0 |
360.0 |
O2 |
C28 |
C13 |
N |
0.5 |
180.1 |
O1 |
C28 |
C13 |
N |
181.5 |
0.1 |
C14 |
C13 |
C28 |
N |
182.0 |
180.0 |
C28 |
C13 |
N |
H18 |
4.6 |
360.0 |
C17 |
C16 |
C15 |
H6 |
322.0 |
60.0 |
C17 |
C16 |
C15 |
H7 |
80.8 |
300.0 |
C16 |
C17 |
O |
C18 |
165.0 |
180.0 |
O |
C17 |
C16 |
H24 |
239.9 |
240.0 |
O |
C17 |
C16 |
H25 |
120.1 |
119.9 |
H8 |
C16 |
C17 |
H9 |
240.7 |
120.0 |
H24 |
C17 |
C16 |
H25 |
240.2 |
239.9 |
C14 |
C15 |
C16 |
H6 |
239.4 |
119.9 |
C14 |
C15 |
C16 |
H7 |
120.6 |
240.0 |
H6 |
C15 |
C16 |
H7 |
241.2 |
120.0 |
C2 |
C1 |
C6 |
C7 |
182.0 |
180.0 |
C2 |
C1 |
C6 |
C5 |
356.2 |
359.9 |
C3 |
C2 |
C1 |
C6 |
3.2 |
0.1 |
C2 |
C3 |
C4 |
C5 |
1.6 |
0.0 |
C4 |
C3 |
C2 |
H2 |
180.0 |
179.9 |
C2 |
C3 |
C4 |
H20 |
181.7 |
180.0 |
N |
C13 |
C14 |
C15 |
187.8 |
180.0 |
C28 |
C13 |
C14 |
N |
178.2 |
180.0 |
C14 |
C13 |
N |
H18 |
183.1 |
180.0 |
C13 |
C14 |
C15 |
H6 |
144.1 |
210.0 |
C13 |
C14 |
C15 |
H7 |
25.3 |
329.9 |
C1 |
C6 |
C5 |
H19 |
183.5 |
180.0 |
O |
C17 |
C16 |
H8 |
62.9 |
60.0 |
O |
C17 |
C16 |
H9 |
182.2 |
300.0 |
C16 |
C17 |
O |
H24 |
120.1 |
120.1 |
C16 |
C17 |
O |
H25 |
239.9 |
240.1 |
C17 |
O |
C18 |
C23 |
195.4 |
180.6 |
H24 |
C17 |
O |
H25 |
119.8 |
120.0 |
C18 |
O |
C17 |
H24 |
44.9 |
59.9 |
C18 |
O |
C17 |
H25 |
285.1 |
299.9 |
O |
C18 |
C19 |
H10 |
0.2 |
0.3 |
C24 |
C23 |
C18 |
O |
357.9 |
359.7 |
C16 |
C15 |
C14 |
H6 |
120.6 |
240.1 |
C16 |
C15 |
C14 |
H7 |
239.4 |
120.1 |
C15 |
C14 |
C13 |
N |
187.8 |
180.0 |
H6 |
C15 |
C14 |
H7 |
118.8 |
240.0 |
C14 |
C11 |
C10 |
H5 |
5.7 |
360.0 |
C4 |
C3 |
C2 |
H1 |
177.9 |
180.0 |
C2 |
C3 |
C4 |
H2 |
180.0 |
180.1 |
C3 |
C4 |
C5 |
H19 |
177.6 |
180.0 |
C12 |
C11 |
C10 |
H5 |
185.0 |
180.1 |
C1 |
C6 |
C7 |
C12 |
74.6 |
64.7 |
C12 |
C7 |
C8 |
H3 |
181.5 |
180.0 |
C20 |
C19 |
C18 |
H10 |
180.0 |
179.7 |
C18 |
C19 |
C20 |
H11 |
181.0 |
180.4 |
C23 |
C18 |
C19 |
H10 |
178.2 |
179.8 |
C18 |
C23 |
C24 |
C25 |
166.1 |
162.9 |
C18 |
C23 |
C24 |
H13 |
286.7 |
282.8 |
C18 |
C23 |
C24 |
H14 |
45.5 |
42.2 |
C1 |
C6 |
C7 |
C5 |
174.3 |
179.9 |
C6 |
C7 |
C8 |
H3 |
357.4 |
359.7 |
C1 |
C6 |
C5 |
C7 |
185.6 |
180.1 |
C3 |
C4 |
C5 |
C6 |
357.6 |
0.0 |
C4 |
C5 |
C6 |
H19 |
180.0 |
180.0 |
C11 |
C10 |
C9 |
H4 |
173.9 |
180.0 |
C18 |
C19 |
C20 |
H10 |
180.0 |
180.3 |
C21 |
C20 |
C19 |
H11 |
180.0 |
180.0 |
C19 |
C20 |
C21 |
H12 |
177.7 |
179.9 |
O |
C18 |
C23 |
C24 |
357.9 |
359.7 |
C23 |
C24 |
C25 |
C26 |
43.7 |
50.7 |
C25 |
C24 |
C23 |
H13 |
239.4 |
240.1 |
C25 |
C24 |
C23 |
H14 |
120.6 |
120.7 |
C23 |
C24 |
C25 |
H26 |
164.1 |
170.7 |
C23 |
C24 |
C25 |
H27 |
283.3 |
291.3 |
H13 |
C24 |
C23 |
H14 |
241.3 |
240.6 |
C25 |
C24 |
C23 |
C18 |
166.1 |
162.9 |
C23 |
C24 |
C25 |
H13 |
120.6 |
120.1 |
C23 |
C24 |
C25 |
H14 |
239.4 |
239.5 |
C26 |
C25 |
C24 |
H26 |
239.6 |
239.9 |
C26 |
C25 |
C24 |
H27 |
120.4 |
119.4 |
C24 |
C25 |
C26 |
H28 |
62.7 |
170.4 |
C24 |
C25 |
C26 |
H29 |
181.8 |
49.8 |
H13 |
C24 |
C25 |
H14 |
118.8 |
119.4 |
H26 |
C25 |
C24 |
H27 |
240.8 |
239.4 |
C1 |
C6 |
C7 |
C8 |
258.8 |
245.0 |
C9 |
C8 |
C7 |
H3 |
180.0 |
180.0 |
C7 |
C8 |
C9 |
H4 |
182.8 |
179.9 |
C23 |
C22 |
C21 |
H12 |
184.4 |
180.0 |
C23 |
C22 |
C27 |
H15 |
102.2 |
102.6 |
C23 |
C22 |
C27 |
H16 |
221.0 |
222.0 |
C5 |
C4 |
C3 |
H2 |
181.6 |
180.0 |
C3 |
C4 |
C5 |
H20 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
H19 |
180.0 |
180.0 |
C21 |
C20 |
C19 |
H10 |
181.0 |
180.1 |
C19 |
C20 |
C21 |
H11 |
180.0 |
180.0 |
C22 |
C21 |
C20 |
H12 |
180.0 |
180.0 |
C10 |
C9 |
C8 |
H3 |
182.8 |
180.1 |
C8 |
C9 |
C10 |
H4 |
180.0 |
179.9 |
C7 |
C8 |
C9 |
H3 |
180.0 |
180.0 |
C10 |
C9 |
C8 |
H4 |
180.0 |
180.1 |
C26 |
C25 |
C24 |
H13 |
283.1 |
290.6 |
C26 |
C25 |
C24 |
H14 |
164.3 |
171.2 |
C24 |
C25 |
C26 |
H26 |
120.4 |
119.9 |
C24 |
C25 |
C26 |
H27 |
239.6 |
240.4 |
C25 |
C26 |
C27 |
H15 |
283.6 |
290.8 |
C25 |
C26 |
C27 |
H16 |
164.8 |
171.4 |
H26 |
C25 |
C26 |
H27 |
119.2 |
120.5 |
H28 |
C26 |
C25 |
H29 |
240.9 |
120.6 |
C22 |
C21 |
C20 |
H11 |
177.6 |
179.9 |
C20 |
C21 |
C22 |
H12 |
180.0 |
180.0 |
C27 |
C22 |
C21 |
H12 |
358.1 |
359.7 |
C26 |
C27 |
C22 |
H15 |
239.4 |
239.6 |
C26 |
C27 |
C22 |
H16 |
120.6 |
120.2 |
H15 |
C27 |
C22 |
H16 |
241.2 |
240.6 |
C24 |
C25 |
C26 |
C27 |
302.2 |
290.3 |
C22 |
C27 |
C26 |
H15 |
120.6 |
120.4 |
C22 |
C27 |
C26 |
H16 |
239.4 |
239.8 |
H15 |
C27 |
C26 |
H16 |
118.7 |
119.4 |
H1 |
C2 |
C1 |
C6 |
183.1 |
180.0 |
H1 |
C2 |
C3 |
C4 |
177.9 |
180.0 |
H1 |
C2 |
C3 |
H2 |
357.9 |
0.1 |
C2 |
C3 |
H2 |
C4 |
180.0 |
179.9 |
H2 |
C3 |
C2 |
H1 |
357.9 |
0.1 |
H2 |
C3 |
C4 |
C5 |
181.6 |
180.0 |
H2 |
C3 |
C4 |
H20 |
1.7 |
360.0 |
C7 |
C8 |
H3 |
C9 |
180.0 |
180.0 |
H3 |
C8 |
C9 |
H4 |
2.8 |
360.0 |
H4 |
C9 |
C8 |
H3 |
2.8 |
360.0 |
H5 |
C10 |
C9 |
H4 |
353.9 |
0.0 |
C16 |
C15 |
H6 |
H7 |
118.1 |
239.9 |
C14 |
C15 |
H6 |
H7 |
241.8 |
120.0 |
C16 |
C15 |
H7 |
H6 |
241.9 |
120.0 |
C14 |
C15 |
H7 |
H6 |
118.2 |
240.0 |
H8 |
C16 |
C17 |
O |
62.9 |
60.0 |
C17 |
C16 |
H8 |
H9 |
119.0 |
240.0 |
H8 |
C16 |
C17 |
H24 |
183.0 |
180.0 |
H8 |
C16 |
C17 |
H25 |
302.8 |
300.0 |
H8 |
C16 |
C15 |
H6 |
201.7 |
180.1 |
H8 |
C16 |
C15 |
H7 |
320.5 |
60.0 |
H9 |
C16 |
C17 |
O |
182.2 |
300.0 |
C17 |
C16 |
H9 |
H8 |
241.1 |
120.1 |
H9 |
C16 |
C17 |
H24 |
302.3 |
60.0 |
H9 |
C16 |
C17 |
H25 |
62.1 |
180.1 |
H9 |
C16 |
C15 |
H6 |
82.4 |
300.0 |
H9 |
C16 |
C15 |
H7 |
201.2 |
180.0 |
H10 |
C19 |
C20 |
C21 |
181.0 |
180.1 |
H10 |
C19 |
C20 |
H11 |
1.0 |
0.1 |
C19 |
C20 |
H11 |
C21 |
180.0 |
180.0 |
H11 |
C20 |
C19 |
H10 |
1.0 |
0.1 |
H11 |
C20 |
C21 |
H12 |
357.7 |
359.9 |
H12 |
C21 |
C20 |
H11 |
357.7 |
359.9 |
H13 |
C24 |
C23 |
C18 |
286.7 |
282.8 |
C23 |
C24 |
H13 |
C25 |
236.2 |
239.0 |
C23 |
C24 |
H13 |
H14 |
118.1 |
119.4 |
H13 |
C24 |
C25 |
C26 |
283.1 |
290.6 |
C25 |
C24 |
H13 |
H14 |
241.9 |
240.4 |
H13 |
C24 |
C25 |
H26 |
43.5 |
50.7 |
H13 |
C24 |
C25 |
H27 |
162.7 |
171.2 |
H14 |
C24 |
C23 |
C18 |
45.5 |
42.2 |
C23 |
C24 |
H14 |
C25 |
123.8 |
121.4 |
C23 |
C24 |
H14 |
H13 |
241.9 |
240.6 |
H14 |
C24 |
C25 |
C26 |
164.3 |
171.2 |
C25 |
C24 |
H14 |
H13 |
118.1 |
119.2 |
H14 |
C24 |
C25 |
H26 |
284.7 |
291.3 |
H14 |
C24 |
C25 |
H27 |
43.9 |
51.8 |
C22 |
C27 |
H15 |
H16 |
118.1 |
119.4 |
C26 |
C27 |
H15 |
H16 |
242.0 |
240.6 |
C22 |
C27 |
H16 |
H15 |
241.9 |
240.5 |
C26 |
C27 |
H16 |
H15 |
118.0 |
119.5 |
C3 |
C4 |
H20 |
C5 |
180.0 |
180.0 |
H20 |
C4 |
C3 |
H2 |
1.7 |
360.0 |
H20 |
C4 |
C5 |
H19 |
357.6 |
0.0 |
H22 |
C |
H21 |
H23 |
120.0 |
120.0 |
H21 |
C |
H22 |
H23 |
240.0 |
240.0 |
H21 |
C |
H23 |
H22 |
120.0 |
120.0 |
C16 |
C17 |
H24 |
O |
239.3 |
240.0 |
H24 |
C17 |
C16 |
H8 |
183.0 |
180.0 |
H24 |
C17 |
C16 |
H9 |
302.3 |
60.0 |
C16 |
C17 |
H24 |
H25 |
119.7 |
120.0 |
H24 |
C17 |
O |
C18 |
44.9 |
59.9 |
O |
C17 |
H24 |
H25 |
240.4 |
240.1 |
C16 |
C17 |
H25 |
O |
120.7 |
119.9 |
H25 |
C17 |
C16 |
H8 |
302.8 |
300.0 |
H25 |
C17 |
C16 |
H9 |
62.1 |
180.1 |
C16 |
C17 |
H25 |
H24 |
240.3 |
239.9 |
H25 |
C17 |
O |
C18 |
285.1 |
299.9 |
O |
C17 |
H25 |
H24 |
119.6 |
120.0 |
C24 |
C25 |
H26 |
C26 |
237.6 |
240.8 |
H26 |
C25 |
C24 |
H13 |
43.5 |
50.7 |
H26 |
C25 |
C24 |
H14 |
284.7 |
291.3 |
C24 |
C25 |
H26 |
H27 |
118.8 |
120.5 |
C26 |
C25 |
H26 |
H27 |
241.2 |
239.7 |
H26 |
C25 |
C26 |
H28 |
302.2 |
50.5 |
H26 |
C25 |
C26 |
H29 |
61.4 |
289.9 |
C24 |
C25 |
H27 |
C26 |
122.4 |
118.9 |
H27 |
C25 |
C24 |
H13 |
162.7 |
171.2 |
H27 |
C25 |
C24 |
H14 |
43.9 |
51.8 |
C24 |
C25 |
H27 |
H26 |
241.2 |
239.5 |
C26 |
C25 |
H27 |
H26 |
118.8 |
120.6 |
H27 |
C25 |
C26 |
H28 |
183.0 |
290.0 |
H27 |
C25 |
C26 |
H29 |
302.2 |
169.4 |
H28 |
C26 |
C25 |
H26 |
302.2 |
50.5 |
H28 |
C26 |
C25 |
H27 |
183.0 |
290.0 |
C25 |
C26 |
H28 |
H29 |
118.7 |
239.4 |
H28 |
C26 |
C27 |
H15 |
163.1 |
50.6 |
H28 |
C26 |
C27 |
H16 |
44.4 |
291.1 |
H29 |
C26 |
C25 |
H26 |
61.4 |
289.9 |
H29 |
C26 |
C25 |
H27 |
302.2 |
169.4 |
C25 |
C26 |
H29 |
H28 |
241.3 |
120.6 |
H29 |
C26 |
C27 |
H15 |
44.0 |
171.1 |
H29 |
C26 |
C27 |
H16 |
285.2 |
51.7 |