Atom Nomenclature for E46

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for E46

Atom Name (V3) Atom Name (V2)
FAA FAA
CBB CBB
FAB FAB
FAC FAC
OAT OAT
CAU CAU
CAI CAI
CAE CAE
CAD CAD
CAF CAF
CAW CAW
NBA NBA
NAP NAP
NAO NAO
CAX CAX
CAH CAH
CAG CAG
CAY CAY
NAQ NAQ
CAV CAV
NAS NAS
CAN CAN
CAZ CAZ
CAL CAL
CAM CAM
CAK CAK
NAR NAR
CAJ CAJ
HAI HAI
HAE HAE
HAD HAD
HAF HAF
HAH HAH
HAG HAG
HAS HAS
HAN1 HAN1
HAN2 HAN2
HAZ HAZ
HAL1 HAL1
HAL2 HAL2
HAM1 HAM1
HAM2 HAM2
HAJ1 HAJ1
HAJ2 HAJ2
HAK1 HAK1
HAK2 HAK2
HAR HAR