PDB Chemical Component E3C

Ideal Model

Chemical Description

Name 3-ethyl, cytidine-5'-monophosphate
Formula C11 H20 N3 O8 P
Formal charge 0
Molecular weight 353.266 g/mol
Component type RNA linking
Nonstandard Parent Id C

Chemical features

Atom count 43
Chiral atom count 5
Chiral atoms C1' C2' C3' C4 C4'
Bond count 44
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-3-ethyl-2-oxidanylidene-4~{H}-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CCN1[C@H](N)C=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C1=O
SMILES (CACTVS) CCN1[CH](N)C=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C1=O
Stereo SMILES (OpenEye) CCN1C(C=CN(C1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N
InChI descriptor InChI=1S/C11H20N3O8P/c1-2-13-7(12)3-4-14(11(13)17)10-9(16)8(15)6(22-10)5-21-23(18,19)20/h3-4,6-10,15-16H,2,5,12H2,1H3,(H2,18,19,20)/t6-,7?,8-,9-,10-/m1/s1
InChIKey descriptor PFBPABKTMDMXDL-HXURKHJASA-N

Status Information

Last modified 2019-05-02
Created 2017-09-25
Release status REL
Model PDB code 6EK0
Processing site EBI