PDB Chemical Component E38
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for E38
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.344 |
1.366 |
| N1 |
C5 |
1.335 |
1.385 |
| S10 |
C2 |
1.787 |
1.762 |
| C2 |
N3 |
1.355 |
1.310 |
| N3 |
C4 |
1.323 |
1.359 |
| C5 |
C4 |
1.382 |
1.404 |
| C4 |
C9 |
1.378 |
1.398 |
| C6 |
C5 |
1.411 |
1.387 |
| C6 |
C7 |
1.404 |
1.380 |
| C6 |
H6 |
1.080 |
1.080 |
| C7 |
C8 |
1.429 |
1.388 |
| C7 |
H7 |
1.080 |
1.080 |
| C8 |
C9 |
1.375 |
1.379 |
| C8 |
BR14 |
1.901 |
1.891 |
| C9 |
H9 |
1.080 |
1.079 |
| S10 |
C11 |
1.858 |
1.810 |
| C11 |
C12 |
1.531 |
1.507 |
| C11 |
H11 |
1.100 |
1.090 |
| C11 |
H11A |
1.100 |
1.090 |
| O13 |
C12 |
1.284 |
1.212 |
| C12 |
C15 |
1.562 |
1.472 |
| C15 |
C20 |
1.399 |
1.398 |
| C15 |
C16 |
1.415 |
1.399 |
| C16 |
C17 |
1.342 |
1.378 |
| C16 |
H16 |
1.080 |
1.080 |
| C17 |
C18 |
1.392 |
1.385 |
| C17 |
S21 |
1.809 |
1.762 |
| C19 |
C18 |
1.407 |
1.385 |
| C18 |
CL23 |
1.658 |
1.736 |
| C20 |
C19 |
1.348 |
1.378 |
| C19 |
H19 |
1.080 |
1.081 |
| C20 |
H20 |
1.080 |
1.081 |
| N25 |
S21 |
1.619 |
1.656 |
| S21 |
O22 |
1.501 |
1.421 |
| S21 |
O24 |
1.453 |
1.421 |
| N25 |
HN25 |
1.000 |
0.971 |
| N25 |
HN2A |
1.000 |
0.969 |
| N1 |
HN1 |
1.000 |
0.971 |
Bond Angles for E38
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C5 |
105.3 |
107.2 |
| N1 |
C2 |
N3 |
111.9 |
109.9 |
| C2 |
N1 |
HN1 |
127.4 |
126.4 |
| N1 |
C5 |
C4 |
108.6 |
106.2 |
| C5 |
N1 |
HN1 |
127.4 |
126.4 |
| C2 |
N3 |
C4 |
105.4 |
109.6 |
| N3 |
C4 |
C9 |
128.0 |
133.3 |
| C5 |
C4 |
C9 |
123.1 |
119.5 |
| C4 |
C9 |
C8 |
113.7 |
119.8 |
| C4 |
C9 |
H9 |
123.2 |
120.2 |
| C7 |
C6 |
H6 |
121.9 |
120.1 |
| C6 |
C7 |
C8 |
117.6 |
120.5 |
| C6 |
C7 |
H7 |
121.2 |
119.8 |
| C8 |
C7 |
H7 |
121.2 |
119.8 |
| C7 |
C8 |
C9 |
126.5 |
120.4 |
| C7 |
C8 |
BR14 |
123.4 |
119.8 |
| C9 |
C8 |
BR14 |
110.1 |
119.8 |
| C8 |
C9 |
H9 |
123.1 |
120.1 |
| S10 |
C11 |
C12 |
117.0 |
109.4 |
| S10 |
C11 |
H11 |
107.1 |
109.5 |
| S10 |
C11 |
H11A |
107.0 |
109.5 |
| C12 |
C11 |
H11 |
107.0 |
109.4 |
| C12 |
C11 |
H11A |
107.0 |
109.5 |
| C11 |
C12 |
C15 |
117.8 |
119.9 |
| H11 |
C11 |
H11A |
111.8 |
109.5 |
| O13 |
C12 |
C15 |
119.8 |
120.0 |
| C12 |
C15 |
C20 |
123.6 |
120.2 |
| C12 |
C15 |
C16 |
119.2 |
120.1 |
| C16 |
C15 |
C20 |
117.0 |
119.7 |
| C15 |
C20 |
C19 |
121.9 |
119.8 |
| C15 |
C20 |
H20 |
119.0 |
120.1 |
| C15 |
C16 |
C17 |
121.3 |
119.8 |
| C15 |
C16 |
H16 |
119.4 |
120.1 |
| C17 |
C16 |
H16 |
119.3 |
120.0 |
| C16 |
C17 |
C18 |
121.1 |
120.2 |
| C16 |
C17 |
S21 |
118.8 |
119.9 |
| C18 |
C17 |
S21 |
119.8 |
119.9 |
| C17 |
C18 |
CL23 |
124.0 |
119.9 |
| C17 |
S21 |
O22 |
103.9 |
106.4 |
| C17 |
S21 |
O24 |
106.7 |
106.4 |
| C19 |
C18 |
CL23 |
117.6 |
119.8 |
| C20 |
C19 |
H19 |
119.9 |
119.9 |
| O22 |
S21 |
O24 |
116.0 |
123.1 |
| HN25 |
N25 |
HN2A |
109.5 |
120.0 |
Torsion Angles for E38
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C5 |
C4 |
358.9 |
0.0 |
| C5 |
N1 |
C2 |
HN1 |
180.0 |
180.2 |
| N1 |
C2 |
N3 |
C4 |
1.2 |
0.0 |
| C5 |
N1 |
C2 |
N3 |
360.0 |
360.0 |
| C2 |
N1 |
C5 |
HN1 |
180.0 |
179.8 |
| N1 |
C5 |
C4 |
C9 |
181.8 |
180.0 |
| S10 |
C2 |
N1 |
HN1 |
358.8 |
359.8 |
| N3 |
C2 |
N1 |
C5 |
360.0 |
360.0 |
| N3 |
C2 |
N1 |
HN1 |
179.9 |
179.7 |
| C2 |
N3 |
C4 |
C9 |
178.2 |
180.0 |
| N1 |
C5 |
C4 |
N3 |
1.9 |
360.0 |
| C5 |
C4 |
N3 |
C9 |
179.9 |
180.0 |
| N3 |
C4 |
C9 |
C8 |
176.9 |
180.0 |
| N3 |
C4 |
C9 |
H9 |
356.9 |
360.0 |
| C4 |
C5 |
N1 |
HN1 |
178.9 |
180.2 |
| N3 |
C4 |
C5 |
C9 |
180.1 |
180.0 |
| C5 |
C4 |
C9 |
C8 |
357.0 |
360.0 |
| C5 |
C4 |
C9 |
H9 |
177.0 |
180.0 |
| C7 |
C8 |
C9 |
C4 |
2.8 |
0.0 |
| C4 |
C9 |
C8 |
BR14 |
182.6 |
180.0 |
| C8 |
C9 |
C4 |
H9 |
180.0 |
180.0 |
| C6 |
C5 |
N1 |
HN1 |
359.2 |
0.2 |
| C6 |
C5 |
C4 |
C9 |
1.6 |
0.0 |
| C8 |
C7 |
C6 |
H7 |
180.0 |
180.0 |
| C6 |
C7 |
C8 |
C9 |
358.8 |
0.0 |
| C6 |
C7 |
C8 |
BR14 |
179.1 |
180.0 |
| H6 |
C6 |
C7 |
C8 |
179.5 |
180.0 |
| H6 |
C6 |
C7 |
H7 |
359.5 |
360.0 |
| C4 |
C9 |
C8 |
C7 |
2.8 |
0.0 |
| C8 |
C7 |
C6 |
H6 |
179.5 |
180.0 |
| C6 |
C7 |
C8 |
H7 |
180.0 |
180.0 |
| C9 |
C8 |
C7 |
BR14 |
179.7 |
180.0 |
| C7 |
C8 |
C9 |
H9 |
182.8 |
180.0 |
| H7 |
C7 |
C6 |
H6 |
359.5 |
360.0 |
| C6 |
C7 |
H7 |
C8 |
180.0 |
180.0 |
| H7 |
C7 |
C8 |
C9 |
178.8 |
180.0 |
| H7 |
C7 |
C8 |
BR14 |
359.1 |
0.0 |
| C4 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
| C9 |
C8 |
C7 |
H7 |
178.8 |
180.0 |
| C7 |
C8 |
C9 |
BR14 |
180.2 |
180.0 |
| BR14 |
C8 |
C7 |
H7 |
359.1 |
0.0 |
| C7 |
C8 |
BR14 |
C9 |
179.8 |
180.0 |
| BR14 |
C8 |
C9 |
H9 |
2.6 |
0.0 |
| C4 |
C9 |
H9 |
C8 |
180.0 |
180.0 |
| H9 |
C9 |
C8 |
BR14 |
2.6 |
0.0 |
| C12 |
C11 |
S10 |
H11 |
240.0 |
240.1 |
| C12 |
C11 |
S10 |
H11A |
120.0 |
120.0 |
| S10 |
C11 |
C12 |
C15 |
220.6 |
180.0 |
| H11 |
C11 |
S10 |
H11A |
240.0 |
239.9 |
| S10 |
C11 |
C12 |
H11 |
120.0 |
120.0 |
| S10 |
C11 |
C12 |
H11A |
240.0 |
240.0 |
| H11 |
C11 |
C12 |
H11A |
120.0 |
120.0 |
| O13 |
C12 |
C11 |
C15 |
178.5 |
180.0 |
| C11 |
C12 |
C15 |
C20 |
141.2 |
360.0 |
| C11 |
C12 |
C15 |
C16 |
316.3 |
180.3 |
| S10 |
C11 |
H11 |
C12 |
233.8 |
240.1 |
| S10 |
C11 |
H11 |
H11A |
116.9 |
120.0 |
| C12 |
C11 |
H11 |
H11A |
243.1 |
240.0 |
| H11 |
C11 |
C12 |
C15 |
100.6 |
60.0 |
| S10 |
C11 |
H11A |
C12 |
126.2 |
120.0 |
| S10 |
C11 |
H11A |
H11 |
243.0 |
240.0 |
| C12 |
C11 |
H11A |
H11 |
116.9 |
120.0 |
| H11A |
C11 |
C12 |
C15 |
340.6 |
300.0 |
| O13 |
C12 |
C11 |
H11 |
279.1 |
240.0 |
| O13 |
C12 |
C11 |
H11A |
159.1 |
120.0 |
| C11 |
C12 |
O13 |
C15 |
181.5 |
180.0 |
| O13 |
C12 |
C15 |
C20 |
322.7 |
180.0 |
| O13 |
C12 |
C15 |
C16 |
137.7 |
0.2 |
| C15 |
C12 |
C11 |
H11 |
100.6 |
60.0 |
| C15 |
C12 |
C11 |
H11A |
340.6 |
300.0 |
| C16 |
C15 |
C12 |
C20 |
175.0 |
180.3 |
| C12 |
C15 |
C20 |
C19 |
177.4 |
179.8 |
| C12 |
C15 |
C20 |
H20 |
357.4 |
0.0 |
| C12 |
C15 |
C16 |
C17 |
181.6 |
180.0 |
| C12 |
C15 |
C16 |
H16 |
1.6 |
360.0 |
| C12 |
C15 |
C20 |
C16 |
175.1 |
180.3 |
| C20 |
C15 |
C16 |
C17 |
357.0 |
0.2 |
| C20 |
C15 |
C16 |
H16 |
177.0 |
180.3 |
| C15 |
C20 |
C19 |
H19 |
177.8 |
180.2 |
| C12 |
C15 |
C16 |
C20 |
184.6 |
179.7 |
| C16 |
C15 |
C20 |
C19 |
2.3 |
359.5 |
| C16 |
C15 |
C20 |
H20 |
182.3 |
179.7 |
| C17 |
C16 |
C15 |
H16 |
180.0 |
180.0 |
| C15 |
C16 |
C17 |
C18 |
3.7 |
0.0 |
| C15 |
C16 |
C17 |
S21 |
176.8 |
180.0 |
| C17 |
C16 |
C15 |
C20 |
357.0 |
0.2 |
| C15 |
C16 |
C17 |
H16 |
180.0 |
180.0 |
| C18 |
C17 |
C16 |
S21 |
187.0 |
180.1 |
| C16 |
C17 |
C18 |
CL23 |
177.7 |
180.0 |
| C16 |
C17 |
S21 |
O22 |
250.4 |
228.6 |
| C16 |
C17 |
S21 |
O24 |
127.4 |
1.5 |
| H16 |
C16 |
C15 |
C20 |
177.0 |
180.3 |
| C15 |
C16 |
H16 |
C17 |
180.0 |
180.0 |
| H16 |
C16 |
C17 |
C18 |
183.7 |
180.0 |
| H16 |
C16 |
C17 |
S21 |
356.8 |
360.0 |
| C18 |
C17 |
C16 |
H16 |
183.7 |
180.0 |
| C16 |
C17 |
C18 |
S21 |
173.0 |
179.9 |
| C18 |
C17 |
S21 |
O22 |
63.6 |
48.5 |
| C18 |
C17 |
S21 |
O24 |
300.5 |
181.4 |
| C19 |
C18 |
C17 |
CL23 |
178.8 |
180.0 |
| S21 |
C17 |
C16 |
H16 |
356.8 |
360.0 |
| C16 |
C17 |
S21 |
C18 |
186.9 |
180.1 |
| S21 |
C17 |
C18 |
CL23 |
4.8 |
0.0 |
| O22 |
S21 |
C17 |
O24 |
123.1 |
227.1 |
| C15 |
C20 |
C19 |
C18 |
357.8 |
0.5 |
| C19 |
C18 |
C17 |
S21 |
183.6 |
180.0 |
| C17 |
C18 |
C19 |
CL23 |
181.1 |
180.0 |
| CL23 |
C18 |
C17 |
S21 |
4.8 |
0.0 |
| C15 |
C20 |
C19 |
H20 |
180.0 |
180.3 |
| C20 |
C19 |
C18 |
CL23 |
181.5 |
179.8 |
| H19 |
C19 |
C18 |
CL23 |
1.6 |
0.0 |
| C15 |
C20 |
H20 |
C19 |
180.0 |
179.7 |
| H20 |
C20 |
C19 |
H19 |
357.8 |
360.0 |
| C17 |
S21 |
O22 |
O24 |
243.3 |
122.9 |
| C17 |
S21 |
O24 |
O22 |
115.2 |
237.1 |
| C2 |
N1 |
HN1 |
C5 |
180.0 |
180.3 |
| HN1 |
N1 |
C2 |
N3 |
179.9 |
179.7 |
| HN1 |
N1 |
C5 |
C4 |
178.9 |
180.2 |