PDB Chemical Component DZY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DZY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O10 |
C8 |
1.243 |
1.208 |
| C8 |
O11 |
1.249 |
1.342 |
| C8 |
C4 |
1.500 |
1.506 |
| N2 |
C5 |
1.360 |
1.290 |
| N2 |
C1 |
1.369 |
1.317 |
| C9 |
C5 |
1.503 |
1.507 |
| C4 |
C1 |
1.504 |
1.507 |
| C5 |
S6 |
1.730 |
1.710 |
| C1 |
C3 |
1.486 |
1.337 |
| C3 |
S6 |
1.746 |
1.762 |
| C3 |
C7 |
1.505 |
1.507 |
| O11 |
H1 |
0.950 |
0.967 |
| C4 |
H2 |
1.100 |
1.090 |
| C4 |
H3 |
1.100 |
1.091 |
| C7 |
H4 |
1.100 |
1.090 |
| C7 |
H5 |
1.100 |
1.090 |
| C7 |
H6 |
1.100 |
1.090 |
| C9 |
H7 |
1.100 |
1.090 |
| C9 |
H8 |
1.100 |
1.090 |
| C9 |
H9 |
1.100 |
1.090 |
Bond Angles for DZY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O10 |
C8 |
C4 |
116.3 |
120.0 |
| C8 |
O11 |
H1 |
109.5 |
117.1 |
| C8 |
C4 |
C1 |
110.2 |
109.5 |
| C8 |
C4 |
H2 |
109.3 |
109.5 |
| C8 |
C4 |
H3 |
109.3 |
109.5 |
| C4 |
C1 |
C3 |
123.2 |
122.7 |
| C1 |
C4 |
H2 |
109.3 |
109.5 |
| C1 |
C4 |
H3 |
109.3 |
109.4 |
| C1 |
C3 |
S6 |
108.5 |
107.9 |
| C1 |
C3 |
C7 |
132.2 |
126.1 |
| C7 |
C3 |
S6 |
119.2 |
126.1 |
| C3 |
C7 |
H4 |
109.5 |
109.5 |
| C3 |
C7 |
H5 |
109.5 |
109.5 |
| C3 |
C7 |
H6 |
109.5 |
109.5 |
| H2 |
C4 |
H3 |
109.5 |
109.4 |
| H4 |
C7 |
H5 |
109.5 |
109.5 |
| H4 |
C7 |
H6 |
109.5 |
109.5 |
| H5 |
C7 |
H6 |
109.4 |
109.5 |
| H7 |
C9 |
H8 |
109.5 |
109.5 |
| H7 |
C9 |
H9 |
109.5 |
109.5 |
| H8 |
C9 |
H9 |
109.5 |
109.4 |
Torsion Angles for DZY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O10 |
C8 |
O11 |
H1 |
360.0 |
0.0 |
| O10 |
C8 |
C4 |
C1 |
213.6 |
360.0 |
| O10 |
C8 |
C4 |
H2 |
333.7 |
120.1 |
| O10 |
C8 |
C4 |
H3 |
93.5 |
240.0 |
| C4 |
C8 |
O11 |
H1 |
180.6 |
180.0 |
| C8 |
C4 |
C1 |
C3 |
264.7 |
90.0 |
| C1 |
C4 |
C8 |
H2 |
239.9 |
239.9 |
| C1 |
C4 |
C8 |
H3 |
120.1 |
120.0 |
| H2 |
C4 |
C8 |
H3 |
240.2 |
240.1 |
| N2 |
C1 |
C4 |
H2 |
325.6 |
149.7 |
| N2 |
C1 |
C4 |
H3 |
205.8 |
29.7 |
| C8 |
C4 |
C1 |
H2 |
120.1 |
120.0 |
| C8 |
C4 |
C1 |
H3 |
239.9 |
240.0 |
| C4 |
C1 |
C3 |
S6 |
181.0 |
180.0 |
| C4 |
C1 |
C3 |
C7 |
0.5 |
0.0 |
| H2 |
C4 |
C1 |
H3 |
119.8 |
119.9 |
| C3 |
C1 |
C4 |
H2 |
144.6 |
329.9 |
| C3 |
C1 |
C4 |
H3 |
24.8 |
210.0 |
| C7 |
C3 |
C1 |
S6 |
179.5 |
180.0 |
| C1 |
C3 |
C7 |
H4 |
180.5 |
90.0 |
| C1 |
C3 |
C7 |
H5 |
300.5 |
210.0 |
| C1 |
C3 |
C7 |
H6 |
60.5 |
330.0 |
| C1 |
C3 |
S6 |
C7 |
179.6 |
180.0 |
| S6 |
C3 |
C7 |
H4 |
360.0 |
270.0 |
| S6 |
C3 |
C7 |
H5 |
120.0 |
30.0 |
| S6 |
C3 |
C7 |
H6 |
240.0 |
150.0 |
| C1 |
C3 |
C7 |
S6 |
180.5 |
180.0 |
| H4 |
C7 |
C3 |
H5 |
240.0 |
240.0 |
| H4 |
C7 |
C3 |
H6 |
120.0 |
120.0 |
| H5 |
C7 |
C3 |
H6 |
240.0 |
240.0 |
| C8 |
C4 |
H2 |
C1 |
239.4 |
239.9 |
| C8 |
C4 |
H2 |
H3 |
119.7 |
120.0 |
| H2 |
C4 |
C1 |
C3 |
144.6 |
329.9 |
| C1 |
C4 |
H2 |
H3 |
240.3 |
240.0 |
| C8 |
C4 |
H3 |
C1 |
120.6 |
120.0 |
| C8 |
C4 |
H3 |
H2 |
240.3 |
240.0 |
| H3 |
C4 |
C1 |
C3 |
24.8 |
210.0 |
| C1 |
C4 |
H3 |
H2 |
119.7 |
120.0 |
| H4 |
C7 |
C3 |
S6 |
360.0 |
270.0 |
| C3 |
C7 |
H4 |
H5 |
120.0 |
120.0 |
| C3 |
C7 |
H4 |
H6 |
240.0 |
240.0 |
| H5 |
C7 |
H4 |
H6 |
120.0 |
120.0 |
| H5 |
C7 |
C3 |
S6 |
120.0 |
30.0 |
| C3 |
C7 |
H5 |
H4 |
240.0 |
240.0 |
| C3 |
C7 |
H5 |
H6 |
120.0 |
120.0 |
| H4 |
C7 |
H5 |
H6 |
240.0 |
240.0 |
| H6 |
C7 |
C3 |
S6 |
240.0 |
150.0 |
| C3 |
C7 |
H6 |
H4 |
120.0 |
120.0 |
| C3 |
C7 |
H6 |
H5 |
240.0 |
240.0 |
| H4 |
C7 |
H6 |
H5 |
120.0 |
120.0 |
| H8 |
C9 |
H7 |
H9 |
120.0 |
120.0 |
| H7 |
C9 |
H8 |
H9 |
240.0 |
240.0 |
| H7 |
C9 |
H9 |
H8 |
120.0 |
120.0 |