PDB Chemical Component DZP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DZP
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.405 |
1.384 |
C1 |
C11 |
1.416 |
1.379 |
C1 |
H1 |
1.103 |
1.081 |
C2 |
C3 |
1.409 |
1.384 |
C2 |
H2 |
1.103 |
1.079 |
C3 |
C4 |
1.407 |
1.379 |
C3 |
H3 |
1.103 |
1.080 |
C4 |
C12 |
1.433 |
1.395 |
C4 |
H4 |
1.103 |
1.080 |
C5 |
C12 |
1.521 |
1.482 |
C5 |
C13 |
1.493 |
1.471 |
C5 |
N15 |
1.312 |
1.286 |
C6 |
C7 |
1.422 |
1.400 |
C6 |
C13 |
1.446 |
1.390 |
C6 |
N2 |
1.462 |
1.386 |
C7 |
C8 |
1.421 |
1.377 |
C7 |
H7 |
1.103 |
1.080 |
C8 |
C9 |
1.413 |
1.386 |
C8 |
H8 |
1.103 |
1.080 |
C9 |
C14 |
1.369 |
1.376 |
C9 |
CL |
1.755 |
1.736 |
C11 |
C12 |
1.431 |
1.394 |
C11 |
H11 |
1.103 |
1.080 |
C13 |
C14 |
1.423 |
1.404 |
C14 |
H14 |
1.103 |
1.080 |
N15 |
C17 |
1.488 |
1.462 |
C17 |
C18 |
1.520 |
1.505 |
C17 |
H171 |
1.115 |
1.090 |
C17 |
H172 |
1.115 |
1.090 |
C18 |
N2 |
1.402 |
1.331 |
C18 |
O1 |
1.221 |
1.212 |
C20 |
N2 |
1.477 |
1.466 |
C20 |
H201 |
1.115 |
1.090 |
C20 |
H202 |
1.115 |
1.089 |
C20 |
H203 |
1.115 |
1.090 |
Bond Angles for DZP
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C11 |
120.6 |
120.2 |
C2 |
C1 |
H1 |
119.7 |
119.9 |
C1 |
C2 |
C3 |
119.6 |
120.2 |
C1 |
C2 |
H2 |
120.2 |
119.9 |
C11 |
C1 |
H1 |
119.7 |
120.0 |
C1 |
C11 |
C12 |
120.5 |
119.9 |
C1 |
C11 |
H11 |
119.8 |
120.0 |
C3 |
C2 |
H2 |
120.2 |
119.9 |
C2 |
C3 |
C4 |
120.8 |
120.2 |
C2 |
C3 |
H3 |
119.6 |
119.9 |
C4 |
C3 |
H3 |
119.6 |
119.9 |
C3 |
C4 |
C12 |
120.5 |
119.9 |
C3 |
C4 |
H4 |
119.7 |
120.1 |
C12 |
C4 |
H4 |
119.7 |
120.1 |
C4 |
C12 |
C5 |
122.6 |
120.1 |
C4 |
C12 |
C11 |
118.0 |
119.7 |
C12 |
C5 |
C13 |
118.7 |
117.5 |
C12 |
C5 |
N15 |
117.9 |
117.6 |
C5 |
C12 |
C11 |
119.4 |
120.2 |
C13 |
C5 |
N15 |
123.4 |
124.9 |
C5 |
C13 |
C6 |
121.8 |
123.0 |
C5 |
C13 |
C14 |
119.3 |
117.7 |
C5 |
N15 |
C17 |
119.0 |
121.8 |
C7 |
C6 |
C13 |
118.0 |
119.4 |
C7 |
C6 |
N2 |
119.7 |
117.1 |
C6 |
C7 |
C8 |
121.4 |
120.6 |
C6 |
C7 |
H7 |
119.3 |
119.7 |
C13 |
C6 |
N2 |
122.3 |
123.5 |
C6 |
C13 |
C14 |
118.9 |
119.4 |
C6 |
N2 |
C18 |
123.5 |
125.2 |
C6 |
N2 |
C20 |
120.1 |
117.5 |
C8 |
C7 |
H7 |
119.3 |
119.7 |
C7 |
C8 |
C9 |
119.1 |
120.1 |
C7 |
C8 |
H8 |
120.5 |
119.9 |
C9 |
C8 |
H8 |
120.5 |
120.0 |
C8 |
C9 |
C14 |
120.6 |
120.0 |
C8 |
C9 |
CL |
121.5 |
120.0 |
C14 |
C9 |
CL |
117.8 |
120.0 |
C9 |
C14 |
C13 |
122.0 |
120.5 |
C9 |
C14 |
H14 |
119.0 |
119.7 |
C12 |
C11 |
H11 |
119.7 |
120.1 |
C13 |
C14 |
H14 |
119.0 |
119.7 |
N15 |
C17 |
C18 |
107.8 |
108.9 |
N15 |
C17 |
H171 |
112.8 |
109.6 |
N15 |
C17 |
H172 |
112.8 |
109.5 |
C18 |
C17 |
H171 |
112.8 |
109.6 |
C18 |
C17 |
H172 |
112.8 |
109.6 |
C17 |
C18 |
N2 |
115.8 |
121.6 |
C17 |
C18 |
O1 |
121.9 |
119.2 |
H171 |
C17 |
H172 |
97.6 |
109.7 |
N2 |
C18 |
O1 |
122.3 |
119.2 |
C18 |
N2 |
C20 |
116.4 |
117.4 |
N2 |
C20 |
H201 |
120.0 |
109.5 |
N2 |
C20 |
H202 |
108.4 |
109.4 |
N2 |
C20 |
H203 |
108.4 |
109.4 |
H201 |
C20 |
H202 |
108.4 |
109.5 |
H201 |
C20 |
H203 |
108.4 |
109.5 |
H202 |
C20 |
H203 |
101.6 |
109.5 |
Torsion Angles for DZP
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C11 |
C1 |
C2 |
H1 |
180.0 |
179.9 |
C2 |
C1 |
C11 |
C12 |
359.9 |
0.1 |
C2 |
C1 |
C11 |
H11 |
179.9 |
180.1 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
C1 |
C2 |
C3 |
C4 |
359.9 |
359.7 |
C1 |
C2 |
C3 |
H3 |
179.9 |
180.0 |
C2 |
C1 |
C11 |
H1 |
180.0 |
180.1 |
C11 |
C1 |
C2 |
C3 |
0.1 |
359.9 |
C11 |
C1 |
C2 |
H2 |
180.2 |
180.0 |
C4 |
C12 |
C11 |
C1 |
0.1 |
0.3 |
C5 |
C12 |
C11 |
C1 |
179.9 |
180.0 |
C12 |
C11 |
C1 |
H11 |
180.0 |
180.0 |
C2 |
C1 |
H1 |
C11 |
180.0 |
179.9 |
H1 |
C1 |
C2 |
C3 |
180.1 |
180.0 |
H1 |
C1 |
C2 |
H2 |
0.1 |
0.1 |
H1 |
C1 |
C11 |
C12 |
179.9 |
180.0 |
H1 |
C1 |
C11 |
H11 |
359.9 |
360.0 |
C3 |
C2 |
C1 |
C11 |
0.1 |
359.9 |
C3 |
C2 |
C1 |
H1 |
180.1 |
180.0 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
C4 |
C3 |
C2 |
H3 |
180.0 |
179.7 |
C2 |
C3 |
C4 |
C12 |
0.1 |
0.6 |
C2 |
C3 |
C4 |
H4 |
180.1 |
180.0 |
H2 |
C2 |
C1 |
C11 |
180.2 |
180.0 |
H2 |
C2 |
C1 |
H1 |
0.1 |
0.1 |
C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
H2 |
C2 |
C3 |
C4 |
179.9 |
179.7 |
H2 |
C2 |
C3 |
H3 |
359.9 |
360.0 |
C4 |
C3 |
C2 |
H2 |
179.9 |
179.7 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.3 |
C12 |
C4 |
C3 |
H4 |
180.0 |
180.6 |
C3 |
C4 |
C12 |
C5 |
180.1 |
179.7 |
C3 |
C4 |
C12 |
C11 |
360.0 |
359.4 |
H3 |
C3 |
C2 |
H2 |
359.9 |
360.0 |
C2 |
C3 |
H3 |
C4 |
180.0 |
179.7 |
H3 |
C3 |
C4 |
C12 |
180.1 |
180.3 |
H3 |
C3 |
C4 |
H4 |
0.1 |
359.7 |
C1 |
C11 |
C12 |
C4 |
0.1 |
0.3 |
C12 |
C4 |
C3 |
H3 |
180.1 |
180.3 |
C3 |
C4 |
C12 |
H4 |
180.0 |
179.4 |
C4 |
C12 |
C5 |
C13 |
36.9 |
156.1 |
C4 |
C12 |
C5 |
N15 |
218.1 |
336.1 |
C5 |
C12 |
C4 |
C11 |
180.2 |
180.2 |
C4 |
C12 |
C11 |
H11 |
180.1 |
180.2 |
H4 |
C4 |
C3 |
H3 |
0.1 |
359.7 |
C3 |
C4 |
H4 |
C12 |
180.0 |
180.6 |
H4 |
C4 |
C12 |
C5 |
0.1 |
0.3 |
H4 |
C4 |
C12 |
C11 |
180.0 |
180.0 |
C1 |
C11 |
C12 |
C5 |
179.9 |
180.0 |
C5 |
C12 |
C4 |
H4 |
0.1 |
0.3 |
C4 |
C12 |
C5 |
C11 |
179.8 |
179.8 |
C13 |
C5 |
C12 |
N15 |
178.8 |
180.0 |
C12 |
C5 |
C13 |
C6 |
224.9 |
139.5 |
C12 |
C5 |
C13 |
C14 |
46.5 |
319.7 |
C12 |
C5 |
N15 |
C17 |
178.6 |
180.3 |
C5 |
C12 |
C11 |
H11 |
359.9 |
360.0 |
C12 |
C5 |
C13 |
N15 |
181.3 |
180.0 |
C13 |
C5 |
C12 |
C11 |
217.0 |
336.3 |
C13 |
C5 |
N15 |
C17 |
359.9 |
0.4 |
C7 |
C6 |
C13 |
C5 |
179.7 |
179.7 |
C5 |
C13 |
C6 |
N2 |
0.2 |
0.1 |
C6 |
C13 |
C5 |
C14 |
178.3 |
179.8 |
C9 |
C14 |
C13 |
C5 |
180.0 |
180.1 |
C5 |
C13 |
C14 |
H14 |
360.0 |
0.1 |
C12 |
C5 |
N15 |
C13 |
178.7 |
180.0 |
N15 |
C5 |
C12 |
C11 |
38.3 |
156.4 |
N15 |
C5 |
C13 |
C6 |
43.6 |
319.4 |
N15 |
C5 |
C13 |
C14 |
225.2 |
139.6 |
C5 |
N15 |
C17 |
C18 |
285.6 |
63.7 |
C5 |
N15 |
C17 |
H171 |
160.3 |
303.8 |
C5 |
N15 |
C17 |
H172 |
50.8 |
183.5 |
C5 |
C13 |
C6 |
C7 |
179.7 |
179.7 |
C13 |
C6 |
C7 |
N2 |
180.5 |
180.4 |
C7 |
C6 |
C13 |
C14 |
358.1 |
359.5 |
C7 |
C6 |
N2 |
C18 |
135.9 |
220.5 |
C7 |
C6 |
N2 |
C20 |
318.2 |
40.7 |
C8 |
C7 |
C6 |
H7 |
180.0 |
180.1 |
C6 |
C7 |
C8 |
C9 |
359.2 |
360.0 |
C6 |
C7 |
C8 |
H8 |
179.2 |
179.9 |
C6 |
C13 |
C5 |
N15 |
43.6 |
319.4 |
C5 |
C13 |
C6 |
C14 |
181.7 |
180.2 |
C7 |
C6 |
C13 |
N2 |
179.5 |
179.6 |
C13 |
C6 |
C7 |
C8 |
1.6 |
0.4 |
C13 |
C6 |
C7 |
H7 |
181.6 |
180.3 |
C13 |
C6 |
N2 |
C18 |
315.5 |
40.0 |
C13 |
C6 |
N2 |
C20 |
137.7 |
220.3 |
C9 |
C14 |
C13 |
C6 |
1.6 |
0.3 |
C6 |
C13 |
C14 |
H14 |
181.6 |
180.3 |
C7 |
C6 |
N2 |
C13 |
180.5 |
180.4 |
N2 |
C6 |
C7 |
C8 |
181.1 |
180.0 |
N2 |
C6 |
C7 |
H7 |
1.1 |
359.8 |
N2 |
C6 |
C13 |
C14 |
178.6 |
179.9 |
C17 |
C18 |
N2 |
C6 |
3.8 |
357.5 |
C6 |
N2 |
C18 |
O1 |
182.2 |
177.5 |
C18 |
N2 |
C6 |
C20 |
177.8 |
179.7 |
C6 |
N2 |
C20 |
H201 |
180.0 |
179.7 |
C6 |
N2 |
C20 |
H202 |
54.7 |
299.8 |
C6 |
N2 |
C20 |
H203 |
305.3 |
59.8 |
C8 |
C7 |
C6 |
C13 |
1.6 |
0.4 |
C8 |
C7 |
C6 |
N2 |
181.1 |
180.0 |
C6 |
C7 |
C8 |
H7 |
180.0 |
179.9 |
C9 |
C8 |
C7 |
H8 |
180.0 |
180.1 |
C7 |
C8 |
C9 |
C14 |
0.4 |
359.8 |
C7 |
C8 |
C9 |
CL |
178.8 |
179.9 |
H7 |
C7 |
C6 |
C13 |
181.6 |
180.3 |
H7 |
C7 |
C6 |
N2 |
1.1 |
359.8 |
C6 |
C7 |
H7 |
C8 |
180.0 |
180.1 |
H7 |
C7 |
C8 |
C9 |
179.2 |
180.1 |
H7 |
C7 |
C8 |
H8 |
359.2 |
360.0 |
C9 |
C8 |
C7 |
H7 |
179.2 |
180.1 |
C7 |
C8 |
C9 |
H8 |
180.0 |
179.9 |
C14 |
C9 |
C8 |
CL |
181.6 |
179.9 |
C8 |
C9 |
C14 |
C13 |
359.2 |
0.0 |
C8 |
C9 |
C14 |
H14 |
179.2 |
180.0 |
H8 |
C8 |
C7 |
H7 |
359.2 |
360.0 |
C7 |
C8 |
H8 |
C9 |
180.0 |
180.1 |
H8 |
C8 |
C9 |
C14 |
180.4 |
179.9 |
H8 |
C8 |
C9 |
CL |
358.8 |
360.0 |
C5 |
C13 |
C14 |
C9 |
180.0 |
180.1 |
C6 |
C13 |
C14 |
C9 |
1.6 |
0.3 |
C14 |
C9 |
C8 |
H8 |
180.4 |
179.9 |
C8 |
C9 |
C14 |
CL |
178.5 |
180.1 |
C13 |
C14 |
C9 |
H14 |
180.0 |
180.0 |
CL |
C9 |
C8 |
H8 |
358.8 |
360.0 |
C8 |
C9 |
CL |
C14 |
181.5 |
179.9 |
CL |
C9 |
C14 |
C13 |
180.7 |
180.0 |
CL |
C9 |
C14 |
H14 |
0.7 |
359.9 |
C12 |
C11 |
C1 |
H1 |
179.9 |
180.0 |
C1 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
C11 |
C12 |
C4 |
H4 |
180.0 |
180.0 |
C4 |
C12 |
C11 |
C5 |
180.2 |
180.2 |
C11 |
C12 |
C5 |
C13 |
217.0 |
336.3 |
C11 |
C12 |
C5 |
N15 |
38.3 |
156.4 |
H11 |
C11 |
C1 |
H1 |
359.9 |
360.0 |
C1 |
C11 |
H11 |
C12 |
180.0 |
180.0 |
C14 |
C13 |
C5 |
N15 |
225.2 |
139.6 |
C5 |
C13 |
C14 |
C6 |
178.4 |
179.8 |
C14 |
C13 |
C6 |
N2 |
178.6 |
179.9 |
C13 |
C14 |
C9 |
CL |
180.7 |
180.0 |
C9 |
C14 |
C13 |
H14 |
180.0 |
180.0 |
H14 |
C14 |
C9 |
CL |
0.7 |
359.9 |
C9 |
C14 |
H14 |
C13 |
180.0 |
180.0 |
C18 |
C17 |
N15 |
H171 |
125.3 |
119.9 |
C18 |
C17 |
N15 |
H172 |
234.8 |
240.2 |
N15 |
C17 |
C18 |
N2 |
70.9 |
296.6 |
N15 |
C17 |
C18 |
O1 |
252.5 |
116.6 |
H171 |
C17 |
N15 |
H172 |
109.5 |
120.3 |
C6 |
N2 |
C18 |
C17 |
3.8 |
357.5 |
N15 |
C17 |
C18 |
H171 |
234.7 |
240.1 |
N15 |
C17 |
C18 |
H172 |
125.2 |
119.8 |
H171 |
C17 |
C18 |
H172 |
250.5 |
239.6 |
N2 |
C18 |
C17 |
O1 |
178.4 |
180.0 |
C17 |
C18 |
N2 |
C20 |
181.6 |
177.3 |
N15 |
C17 |
H171 |
C18 |
122.5 |
119.5 |
N15 |
C17 |
H171 |
H172 |
241.2 |
239.8 |
C18 |
C17 |
H171 |
H172 |
118.7 |
120.3 |
H171 |
C17 |
C18 |
N2 |
196.1 |
56.5 |
H171 |
C17 |
C18 |
O1 |
17.7 |
236.5 |
N15 |
C17 |
H172 |
C18 |
237.5 |
240.6 |
N15 |
C17 |
H172 |
H171 |
118.8 |
120.3 |
C18 |
C17 |
H172 |
H171 |
241.2 |
239.7 |
H172 |
C17 |
C18 |
N2 |
305.6 |
176.9 |
H172 |
C17 |
C18 |
O1 |
127.2 |
356.9 |
C6 |
N2 |
C18 |
C20 |
182.2 |
180.3 |
N2 |
C18 |
C17 |
H171 |
196.1 |
56.5 |
N2 |
C18 |
C17 |
H172 |
305.6 |
176.9 |
C17 |
C18 |
N2 |
O1 |
181.6 |
180.0 |
C18 |
N2 |
C20 |
H201 |
2.1 |
360.0 |
C18 |
N2 |
C20 |
H202 |
236.8 |
120.0 |
C18 |
N2 |
C20 |
H203 |
127.3 |
240.0 |
O1 |
C18 |
C17 |
H171 |
17.7 |
236.5 |
O1 |
C18 |
C17 |
H172 |
127.2 |
356.9 |
C17 |
C18 |
O1 |
N2 |
178.3 |
180.0 |
O1 |
C18 |
N2 |
C20 |
0.0 |
357.3 |
C6 |
N2 |
C20 |
C18 |
177.9 |
179.8 |
C20 |
N2 |
C18 |
O1 |
0.0 |
357.3 |
H201 |
C20 |
N2 |
H202 |
125.3 |
240.0 |
H201 |
C20 |
N2 |
H203 |
234.8 |
120.0 |
H202 |
C20 |
N2 |
H203 |
109.5 |
240.0 |
N2 |
C20 |
H201 |
H202 |
234.7 |
120.0 |
N2 |
C20 |
H201 |
H203 |
125.2 |
240.1 |
H202 |
C20 |
H201 |
H203 |
250.5 |
120.1 |
N2 |
C20 |
H202 |
H201 |
131.8 |
240.0 |
N2 |
C20 |
H202 |
H203 |
245.9 |
119.9 |
H201 |
C20 |
H202 |
H203 |
114.1 |
239.9 |
N2 |
C20 |
H203 |
H201 |
228.2 |
120.0 |
N2 |
C20 |
H203 |
H202 |
114.1 |
240.1 |
H201 |
C20 |
H203 |
H202 |
245.9 |
120.1 |