PDB Chemical Component DZM

Ideal Model

Chemical Description

Name 3-deaza-3-methyladenine
Synonyms 1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-7-methyl-1H-imidazo[4,5-c]pyridin-4-amine
Formula C12 H17 N4 O6 P
Formal charge 0
Molecular weight 344.260 g/mol
Component type DNA LINKING
Nonstandard Parent Id DA

Chemical features

Atom count 40
Chiral atom count 3
Chiral atoms C1' C3' C4'
Observed leaving atoms OP3 HO3' HOP3
Bond count 42
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-7-methyl-1H-imidazo[4,5-c]pyridin-4-amine
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(4-azanyl-7-methyl-imidazo[4,5-c]pyridin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) Cc1cnc(N)c2ncn([C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c12
SMILES (CACTVS) Cc1cnc(N)c2ncn([CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c12
Stereo SMILES (OpenEye) Cc1cnc(c2c1n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N
InChI descriptor InChI=1S/C12H17N4O6P/c1-6-3-14-12(13)10-11(6)16(5-15-10)9-2-7(17)8(22-9)4-21-23(18,19)20/h3,5,7-9,17H,2,4H2,1H3,(H2,13,14)(H2,18,19,20)/t7-,8+,9+/m0/s1
InChIKey descriptor IQDCOTYILQNADN-DJLDLDEBSA-N

Status Information

Last modified 2021-03-13
Created 2009-09-24
Release status REL
Model PDB code 3JX7
Processing site RCSB