Atom Nomenclature for DZG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for DZG

Atom Name (V3) Atom Name (V2)
CAA CAA
OAS OAS
CAV CAV
CAG CAG
CAI CAI
CAF CAF
CAH CAH
CAW CAW
SBC SBC
OAB OAB
OAC OAC
NBA NBA
CAP CAP
CAR CAR
CAO CAO
CAQ CAQ
NBB NBB
SBD SBD
OAD OAD
OAE OAE
CAX CAX
CAL CAL
CAZ CAZ
OAU OAU
CAN CAN
CAM CAM
OAT OAT
CAY CAY
CAK CAK
CAJ CAJ
HAA HAA
HAAA HAAA
HAAB HAAB
HAG HAG
HAI HAI
HAF HAF
HAH HAH
HAP HAP
HAPA HAPA
HAR HAR
HARA HARA
HAO HAO
HAOA HAOA
HAQ HAQ
HAQA HAQA
HAL HAL
HAN HAN
HANA HANA
HAM HAM
HAMA HAMA
HAK HAK
HAJ HAJ