PDB Chemical Component DZF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DZF

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.346 1.358
N1 C8A 1.459 1.381
N1 HN1 1.020 0.970
C2 NA2 1.355 1.366
C2 N3 1.326 1.316
NA2 HN21 1.020 0.969
NA2 HN22 1.020 0.970
N3 C4 1.519 1.342
C4 O4 1.368 1.220
C4 C4A 1.417 1.474
C4A C5 1.474 1.394
C4A C8A 1.349 1.405
C5 C6 1.360 1.384
C5 H5 1.103 1.080
C6 C7 1.476 1.386
C6 C9 1.635 1.506
C7 N8 1.199 1.318
C7 H7 1.102 1.079
N8 C8A 1.405 1.323
C9 N10 1.628 1.465
C9 H91 1.115 1.090
C9 H92 1.114 1.089
N10 C14 1.413 1.390
N10 HN0 1.020 0.970
C11 C12 1.360 1.398
C11 C16 1.215 1.397
C11 C 1.471 1.475
C12 C13 1.411 1.376
C12 H12 1.103 1.080
C13 C14 1.524 1.391
C13 H13 1.103 1.079
C14 C15 1.403 1.391
C15 C16 1.371 1.376
C15 H15 1.102 1.080
C16 H16 1.103 1.079
C O 1.240 1.216
C N 1.291 1.348
N CA 1.404 1.465
N HN 1.020 0.969
CA CB 1.473 1.529
CA CT 1.515 1.507
CA HA 1.115 1.090
CB CG 1.586 1.529
CB HB1 1.115 1.091
CB HB2 1.115 1.090
CG CD 1.664 1.506
CG HG1 1.115 1.090
CG HG2 1.116 1.090
CD OE1 1.479 1.208
CD OE2 1.394 1.343
OE2 HOE2 0.950 0.967
CT O1 1.228 1.208
CT O2 1.288 1.342
O2 HO2 0.949 0.967

Bond Angles for DZF

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C8A 122.1 120.5
C2 N1 HN1 107.7 119.8
N1 C2 NA2 128.9 118.5
N1 C2 N3 115.5 123.1
C8A N1 HN1 107.7 119.7
N1 C8A C4A 123.2 118.2
N1 C8A N8 112.9 121.7
NA2 C2 N3 115.6 118.4
C2 NA2 HN21 128.9 120.0
C2 NA2 HN22 105.4 120.0
C2 N3 C4 126.5 121.5
HN21 NA2 HN22 105.4 120.0
N3 C4 O4 124.5 120.8
N3 C4 C4A 114.9 118.3
O4 C4 C4A 120.6 120.9
C4 C4A C5 116.6 122.1
C4 C4A C8A 117.7 118.4
C5 C4A C8A 125.0 119.6
C4A C5 C6 107.9 117.9
C4A C5 H5 129.2 121.1
C4A C8A N8 123.3 120.1
C6 C5 H5 122.9 121.0
C5 C6 C7 121.8 119.4
C5 C6 C9 118.6 120.3
C7 C6 C9 119.6 120.3
C6 C7 N8 129.7 121.6
C6 C7 H7 127.6 119.1
C6 C9 N10 110.9 109.5
C6 C9 H91 111.6 109.5
C6 C9 H92 111.6 109.5
N8 C7 H7 102.7 119.3
C7 N8 C8A 112.0 121.5
N10 C9 H91 111.7 109.4
N10 C9 H92 111.6 109.5
C9 N10 C14 124.5 120.0
C9 N10 HN0 106.9 119.9
H91 C9 H92 98.8 109.5
C14 N10 HN0 106.9 120.0
N10 C14 C13 113.3 119.9
N10 C14 C15 125.8 119.9
C12 C11 C16 122.3 119.9
C12 C11 C 118.8 120.1
C11 C12 C13 122.8 119.9
C11 C12 H12 116.7 120.0
C16 C11 C 118.9 120.1
C11 C16 C15 126.9 119.9
C11 C16 H16 109.7 120.1
C11 C O 118.0 120.0
C11 C N 122.4 120.0
C13 C12 H12 120.5 120.1
C12 C13 C14 111.6 120.1
C12 C13 H13 120.9 119.9
C14 C13 H13 127.5 120.0
C13 C14 C15 120.9 120.2
C14 C15 C16 115.6 120.1
C14 C15 H15 123.2 120.0
C16 C15 H15 121.2 119.9
C15 C16 H16 123.5 120.1
O C N 119.0 120.0
C N CA 122.5 120.0
C N HN 114.4 120.0
CA N HN 123.1 120.0
N CA CB 99.1 109.5
N CA CT 105.6 109.5
N CA HA 119.1 109.5
CB CA CT 112.2 109.5
CB CA HA 113.1 109.5
CA CB CG 116.5 109.5
CA CB HB1 109.7 109.4
CA CB HB2 109.7 109.4
CT CA HA 107.5 109.5
CA CT O1 120.1 120.0
CA CT O2 119.3 120.0
CG CB HB1 109.6 109.5
CG CB HB2 109.6 109.5
CB CG CD 98.6 109.5
CB CG HG1 116.4 109.5
CB CG HG2 116.4 109.5
HB1 CB HB2 100.5 109.4
CD CG HG1 116.4 109.4
CD CG HG2 116.4 109.4
CG CD OE1 114.7 120.0
CG CD OE2 120.2 120.1
HG1 CG HG2 94.0 109.4
OE1 CD OE2 125.1 119.9
CD OE2 HOE2 120.1 120.0
O1 CT O2 120.6 120.0
CT O2 HO2 119.3 120.0

Torsion Angles for DZF

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C8A N1 C2 HN1 125.2 179.8
C2 N1 C8A C4A 4.1 0.4
C2 N1 C8A N8 175.0 180.2
NA2 C2 N1 N3 179.1 180.1
N1 C2 NA2 HN21 180.0 179.7
N1 C2 NA2 HN22 54.8 359.6
N1 C2 N3 C4 359.1 0.2
C2 N1 C8A HN1 234.8 180.2
C8A N1 C2 NA2 178.6 179.7
C8A N1 C2 N3 359.5 359.6
C4 C4A C8A N1 354.2 359.8
C5 C4A C8A N1 164.5 179.7
C4A C8A N1 N8 189.1 180.2
C7 N8 C8A N1 192.3 180.3
C2 N1 HN1 C8A 133.4 179.8
HN1 N1 C2 NA2 53.4 359.9
HN1 N1 C2 N3 234.3 179.7
HN1 N1 C8A C4A 129.3 180.3
HN1 N1 C8A N8 300.2 0.1
NA2 C2 N1 C8A 178.6 179.7
NA2 C2 N1 HN1 53.4 359.9
N1 C2 NA2 N3 180.9 179.9
NA2 C2 N3 C4 179.8 180.1
HN21 NA2 C2 HN22 125.3 180.1
N3 C2 N1 C8A 359.5 359.6
N3 C2 N1 HN1 234.3 179.7
N1 C2 N3 NA2 179.3 180.1
N3 C2 NA2 HN21 359.2 359.8
N3 C2 NA2 HN22 233.9 179.8
C2 N3 C4 O4 180.6 180.0
C2 N3 C4 C4A 359.1 360.0
HN21 NA2 C2 N3 359.2 359.8
C2 NA2 HN21 HN22 234.7 179.9
HN22 NA2 C2 N3 233.9 179.8
C2 NA2 HN22 HN21 138.8 180.1
O4 C4 N3 C4A 181.5 180.0
N3 C4 C4A C5 193.0 180.1
N3 C4 C4A C8A 4.1 0.0
N3 C4 O4 C4A 178.5 180.0
O4 C4 C4A C5 11.6 0.0
O4 C4 C4A C8A 182.8 180.0
N1 C8A C4A C4 354.2 359.8
N3 C4 C4A O4 181.4 180.0
C5 C4A C4 C8A 188.9 180.0
C4 C4A C5 C6 174.8 180.0
C4 C4A C5 H5 354.8 359.9
C4 C4A C8A N8 184.2 180.0
N1 C8A C4A C5 164.5 179.7
C4 C4A C5 C8A 170.4 180.0
C5 C4A C8A N8 354.5 359.9
C6 C5 C4A H5 180.0 180.0
C4A C5 C6 C7 358.2 0.0
C4A C5 C6 C9 179.5 180.0
C4A C8A N1 HN1 129.3 180.3
N1 C8A C4A N8 169.9 179.8
C4 C4A C8A C5 189.7 180.0
C8A C4A C5 C6 4.4 0.0
C8A C4A C5 H5 184.4 180.0
C7 N8 C8A C4A 3.1 0.0
C6 C5 C4A C8A 4.4 0.0
C4A C5 C6 H5 180.0 180.0
C7 C6 C5 C9 178.7 180.1
C5 C6 C7 N8 0.2 359.9
C5 C6 C7 H7 180.2 180.0
C5 C6 C9 N10 16.3 90.0
C5 C6 C9 H91 141.5 210.0
C5 C6 C9 H92 251.1 330.0
H5 C5 C4A C8A 184.4 180.0
C4A C5 H5 C6 180.0 180.0
H5 C5 C6 C7 178.2 180.1
H5 C5 C6 C9 359.5 0.0
C7 C6 C5 H5 178.2 180.1
C5 C6 C7 C9 181.3 179.9
C7 C6 C9 N10 197.6 270.0
C7 C6 C9 H91 322.8 29.9
C7 C6 C9 H92 72.4 150.0
N8 C7 C6 H7 180.0 180.0
C6 C7 N8 C8A 359.4 0.0
C9 C6 C5 H5 359.5 0.0
C5 C6 C9 C7 178.7 180.1
C9 C6 C7 N8 178.8 180.0
C9 C6 C7 H7 358.8 0.1
N10 C9 C6 H91 234.7 240.1
N10 C9 C6 H92 125.2 120.0
C6 C9 N10 C14 61.1 180.0
C6 C9 N10 HN0 295.8 360.0
H91 C9 C6 H92 250.5 239.9
N1 C8A N8 C7 192.3 180.3
C4A C8A N8 C7 3.1 0.0
N8 C7 C6 C9 178.8 180.0
C6 C7 N8 H7 180.0 180.0
H7 C7 C6 C9 358.8 0.1
C6 C7 H7 N8 180.0 180.0
H7 C7 N8 C8A 179.4 180.0
N8 C8A N1 HN1 300.2 0.1
N1 C8A N8 C4A 189.1 180.2
C8A N8 C7 H7 179.4 180.0
C6 C9 N10 H91 125.2 120.0
C6 C9 N10 H92 234.8 240.0
H91 C9 N10 H92 109.6 120.0
C14 N10 C9 HN0 125.2 180.0
C9 N10 C14 C13 184.1 180.0
C9 N10 C14 C15 4.5 359.7
C6 C9 H91 N10 235.2 240.0
C6 C9 H91 H92 117.6 120.1
N10 C9 H91 H92 242.4 240.0
H91 C9 N10 C14 295.9 60.0
H91 C9 N10 HN0 170.6 240.0
C6 C9 H92 N10 124.8 120.0
C6 C9 H92 H91 242.4 240.0
N10 C9 H92 H91 117.6 119.9
H92 C9 N10 C14 186.3 300.0
H92 C9 N10 HN0 61.0 120.0
C14 N10 C9 H91 295.9 60.0
C14 N10 C9 H92 186.3 300.0
C9 N10 C14 HN0 234.8 180.0
C12 C13 C14 N10 180.9 180.0
N10 C14 C13 H13 0.9 360.0
C13 C14 N10 C15 179.6 180.2
N10 C14 C15 C16 179.5 179.7
N10 C14 C15 H15 359.5 0.3
HN0 N10 C9 H91 170.6 240.0
HN0 N10 C9 H92 61.0 120.0
C9 N10 HN0 C14 135.3 180.0
HN0 N10 C14 C13 309.3 360.0
HN0 N10 C14 C15 129.8 179.7
C16 C11 C12 C 181.6 180.0
C12 C11 C16 C15 359.0 359.8
C12 C11 C16 H16 179.0 180.0
C12 C11 C O 341.6 360.0
C12 C11 C N 170.6 180.0
C13 C12 C11 H12 180.0 179.9
C11 C12 C13 C14 358.8 0.1
C11 C12 C13 H13 178.8 180.1
C12 C11 C16 C 178.4 180.0
C16 C11 C12 C13 1.6 359.9
C16 C11 C12 H12 181.6 180.0
C16 C11 C O 160.1 180.0
C16 C11 C N 349.1 0.0
C14 C15 C16 C11 0.3 0.5
C11 C16 C15 H15 180.3 179.9
C15 C16 C11 H16 180.0 179.8
C12 C11 C C16 181.5 180.0
C C11 C12 C13 180.0 180.0
C C11 C12 H12 0.0 0.0
C C11 C16 C15 180.5 179.7
C C11 C16 H16 0.6 359.9
O C C11 N 171.0 180.0
C11 C N CA 174.5 180.0
C11 C N HN 354.4 359.9
N10 C14 C13 C12 180.9 180.0
C13 C12 C11 C16 1.6 359.9
C13 C12 C11 C 180.0 180.0
C11 C12 C13 H12 180.0 180.1
C14 C13 C12 H13 180.0 180.0
C12 C13 C14 C15 0.5 0.2
H12 C12 C11 C16 181.6 180.0
H12 C12 C11 C 0.0 0.0
C11 C12 H12 C13 180.0 179.9
H12 C12 C13 C14 178.8 180.0
H12 C12 C13 H13 358.8 360.0
C13 C14 N10 HN0 309.3 360.0
N10 C14 C13 C15 180.4 179.8
C14 C13 C12 H12 178.8 180.0
C12 C13 C14 H13 180.0 180.0
C13 C14 C15 C16 0.0 359.5
C13 C14 C15 H15 180.0 180.0
H13 C13 C12 H12 358.8 360.0
C12 C13 H13 C14 180.0 180.0
H13 C13 C14 C15 180.5 180.2
C15 C14 N10 HN0 129.8 179.7
N10 C14 C15 C13 179.5 180.2
C11 C16 C15 C14 0.3 0.5
C15 C14 C13 H13 180.5 180.2
C16 C15 C14 H15 180.0 179.4
C14 C15 C16 H16 180.2 180.3
C15 C16 C11 C 180.5 179.7
C11 C16 C15 H16 180.0 180.2
C14 C15 C16 H15 180.0 180.6
C14 C15 H15 C16 180.0 179.4
H15 C15 C16 H16 0.2 359.7
H16 C16 C11 C 0.6 359.9
C11 C16 H16 C15 180.0 179.8
H16 C16 C15 H15 0.2 359.7
C11 C O N 188.7 180.0
O C N CA 3.5 360.0
O C N HN 183.5 179.9
C11 C N O 170.9 180.0
CA N C HN 180.0 180.1
C N CA CB 93.2 150.0
C N CA CT 209.5 270.0
C N CA HA 330.2 30.0
C N CA HN 180.0 179.9
CB CA N CT 243.8 240.0
CB CA N HA 123.0 120.0
N CA CB CG 203.6 300.0
N CA CB HB1 328.9 60.0
N CA CB HB2 78.3 179.9
CT CA N HA 239.2 240.0
N CA CT O1 335.3 150.0
N CA CT O2 155.6 330.0
C N HN CA 180.0 180.1
HN N CA CB 273.3 330.1
HN N CA CT 29.5 90.1
HN N CA HA 150.3 210.0
CB CA N HN 273.3 330.1
N CA CB CT 111.1 120.0
N CA CB HA 232.9 240.0
CT CA CB HA 121.8 120.0
CB CA CT O1 82.2 270.0
CB CA CT O2 262.5 90.0
CG CB CA HB1 234.7 240.0
CG CB CA HB2 125.3 120.1
CA CB CG CD 254.0 180.0
CA CB CG HG1 19.2 300.0
CA CB CG HG2 128.7 60.0
HB1 CB CA HB2 250.5 240.1
CT CA N HN 29.5 90.1
N CA CT CB 253.1 240.0
N CA CT HA 128.1 120.0
CB CA CT HA 235.0 240.0
CT CA CB CG 92.5 180.0
CT CA CB HB1 217.8 300.1
CT CA CB HB2 327.2 60.0
O1 CT CA O2 179.7 179.9
CA CT O2 HO2 179.9 180.0
HA CA N HN 150.3 210.0
N CA HA CB 115.7 120.0
N CA HA CT 240.1 240.0
CB CA HA CT 124.4 120.0
HA CA CB CG 330.7 60.0
HA CA CB HB1 96.0 180.0
HA CA CB HB2 205.4 300.0
HA CA CT O1 207.2 30.0
HA CA CT O2 27.5 210.1
CG CB CA CT 92.5 180.0
CG CB CA HA 330.7 60.0
CA CB CG HB1 125.3 120.0
CA CB CG HB2 234.7 240.0
HB1 CB CG HB2 109.4 120.0
CD CG CB HG1 234.7 240.0
CD CG CB HG2 125.3 120.0
CB CG CD OE1 181.6 0.0
CB CG CD OE2 2.2 180.0
HG1 CG CB HG2 250.5 240.0
HB1 CB CA CT 217.8 300.1
HB1 CB CA HA 96.0 180.0
CA CB HB1 CG 230.9 240.0
CA CB HB1 HB2 115.4 119.9
CG CB HB1 HB2 244.6 240.0
HB1 CB CG CD 128.7 60.0
HB1 CB CG HG1 253.9 180.0
HB1 CB CG HG2 3.4 300.0
HB2 CB CA CT 327.2 60.0
HB2 CB CA HA 205.4 300.0
CA CB HB2 CG 129.1 120.1
CA CB HB2 HB1 244.5 240.1
CG CB HB2 HB1 115.4 120.0
HB2 CB CG CD 19.2 300.0
HB2 CB CG HG1 144.5 60.0
HB2 CB CG HG2 254.0 180.0
CD CG CB HB1 128.7 60.0
CD CG CB HB2 19.2 300.0
CB CG CD HG1 125.3 120.0
CB CG CD HG2 234.7 239.9
HG1 CG CD HG2 109.5 119.9
OE1 CD CG OE2 179.4 180.1
CG CD OE2 HOE2 180.0 179.9
HG1 CG CB HB1 253.9 180.0
HG1 CG CB HB2 144.5 60.0
CB CG HG1 CD 244.3 240.0
CB CG HG1 HG2 122.2 120.1
CD CG HG1 HG2 237.8 240.1
HG1 CG CD OE1 56.4 240.0
HG1 CG CD OE2 237.0 59.9
HG2 CG CB HB1 3.4 300.0
HG2 CG CB HB2 254.0 180.0
CB CG HG2 CD 115.6 120.1
CB CG HG2 HG1 237.8 240.0
CD CG HG2 HG1 122.2 119.9
HG2 CG CD OE1 306.9 120.1
HG2 CG CD OE2 127.5 300.0
OE1 CD CG HG1 56.4 240.0
OE1 CD CG HG2 306.9 120.1
CG CD OE1 OE2 180.6 179.9
OE1 CD OE2 HOE2 0.7 359.9
OE2 CD CG HG1 237.0 59.9
OE2 CD CG HG2 127.5 300.0
CG CD OE2 OE1 179.4 180.1
O1 CT CA HA 207.2 30.0
CA CT O1 O2 180.3 180.1
O1 CT O2 HO2 0.3 0.1
O2 CT CA HA 27.5 210.1
CA CT O2 O1 179.7 179.9