Atom Nomenclature for DZA

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for DZA

Atom Name (V3) Atom Name (V2)
O10 O10
C09 C09
O11 O11
C08 C08
C07 C07
C02 C02
O01 O01
N03 N03
N04 N04
C06 C06
C05 C05
H10 H10
H081 H081
H082 H082
H071 H071
H072 H072
H03 H03
H061 H061
H062 H062
H063 H063
H051 H051
H052 H052
H053 H053