PDB Chemical Component DZ

Ideal Model

Chemical Description

Name [(2~{R},3~{S},5~{R})-5-(6-azanyl-5-nitro-2-oxidanylidene-1~{H}-pyridin-3-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate
Formula C10 H14 N3 O9 P
Formal charge 0
Molecular weight 351.207 g/mol
Component type DNA linking

Chemical features

Atom count 37
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms OP3
Bond count 38
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},5~{R})-5-(6-azanyl-5-nitro-2-oxidanylidene-1~{H}-pyridin-3-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=C(C=C([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)N1)[N+]([O-])=O
SMILES (CACTVS) NC1=C(C=C([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)N1)[N+]([O-])=O
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1C2=CC(=C(NC2=O)N)[N+](=O)[O-])COP(=O)(O)O)O
InChI descriptor InChI=1S/C10H14N3O9P/c11-9-5(13(16)17)1-4(10(15)12-9)7-2-6(14)8(22-7)3-21-23(18,19)20/h1,6-8,14H,2-3H2,(H3,11,12,15)(H2,18,19,20)/t6-,7+,8+/m0/s1
InChIKey descriptor IUUXEDXPTYNSEU-XLPZGREQSA-N

Status Information

Last modified 2019-06-07
Created 2018-11-12
Release status REL
Model PDB code 6I4O
Processing site EBI