PDB Chemical Component DYH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DYH

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CAA NH 1.467 1.469
NH CAH 1.498 1.469
CAH CAG 1.546 1.531
CAH CAI 1.554 1.516
CAG OAC 1.444 1.429
CAG CAP 1.547 1.534
CAP OAQ 1.460 1.426
OAQ CAR 1.457 1.428
CAR CAS 1.544 1.559
CAR CAI 1.533 1.542
CAS CAK 1.539 1.545
CAI OAJ 1.466 1.429
OAJ CAK 1.460 1.435
CAK CAE 1.543 1.507
CAK CB 1.538 1.530
CAE OAB 1.258 1.342
CAE OAF 1.248 1.209
CB CA 1.529 1.530
CA C 1.551 1.507
CA N 1.476 1.469
C OXT 1.249 1.209
C O 1.260 1.342
CAA HAA 1.100 1.090
CAA HAAA 1.100 1.090
CAA HAAB 1.100 1.090
NH HNH 1.000 1.009
CAH HAH 1.100 1.089
CAG HAG 1.100 1.090
OAC HOAC 0.950 0.967
CAP HAP 1.100 1.090
CAP HAPA 1.100 1.090
CAR HAR 1.100 1.091
CAS HAS 1.100 1.090
CAS HASA 1.100 1.090
CAI HAI 1.100 1.090
OAB HOAB 0.951 0.967
CB HB 1.100 1.091
CB HBA 1.100 1.089
CA HA 1.100 1.089
O HO 0.950 0.967
N HN 1.000 1.008
N HNA 1.000 1.009

Bond Angles for DYH

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CAA NH CAH 115.4 111.0
NH CAA HAA 109.5 109.5
NH CAA HAAA 109.4 109.5
NH CAA HAAB 109.5 109.5
CAA NH HNH 107.6 111.0
NH CAH CAG 108.3 109.3
NH CAH CAI 111.8 109.3
CAH NH HNH 107.5 111.0
NH CAH HAH 109.3 109.3
CAG CAH CAI 111.2 110.5
CAH CAG OAC 110.6 109.7
CAH CAG CAP 111.8 108.2
CAG CAH HAH 109.9 109.3
CAH CAG HAG 106.9 109.7
CAH CAI CAR 117.0 112.1
CAH CAI OAJ 107.3 112.5
CAI CAH HAH 106.3 109.2
CAH CAI HAI 104.7 109.1
OAC CAG CAP 109.0 109.7
OAC CAG HAG 109.8 109.7
CAG OAC HOAC 109.5 114.0
CAG CAP OAQ 107.2 108.6
CAP CAG HAG 108.6 109.7
CAG CAP HAP 110.2 109.6
CAG CAP HAPA 110.7 109.6
CAP OAQ CAR 113.4 115.6
OAQ CAP HAP 110.2 109.6
OAQ CAP HAPA 110.7 109.6
OAQ CAR CAS 108.7 106.6
OAQ CAR CAI 112.3 110.5
OAQ CAR HAR 105.9 112.5
CAS CAR CAI 101.5 100.2
CAR CAS CAK 102.4 102.1
CAS CAR HAR 115.9 112.9
CAR CAS HAS 111.9 110.9
CAR CAS HASA 113.4 111.0
CAR CAI OAJ 105.3 105.9
CAI CAR HAR 112.6 113.3
CAR CAI HAI 106.7 109.0
CAS CAK OAJ 106.7 107.5
CAS CAK CAE 109.7 109.9
CAS CAK CB 110.0 109.8
CAK CAS HAS 111.9 110.9
CAK CAS HASA 113.4 110.9
CAI OAJ CAK 109.0 109.4
OAJ CAI HAI 116.5 108.2
OAJ CAK CAE 112.2 109.8
OAJ CAK CB 106.1 109.8
CAE CAK CB 112.1 109.9
CAK CAE OAB 117.8 120.0
CAK CAE OAF 116.5 120.0
CAK CB CA 114.6 109.5
CAK CB HB 107.8 109.4
CAK CB HBA 106.7 109.6
OAB CAE OAF 125.6 120.0
CAE OAB HOAB 109.5 117.0
CB CA C 107.5 109.5
CB CA N 110.3 109.4
CA CB HB 107.8 109.4
CA CB HBA 106.6 109.5
CB CA HA 110.1 109.5
C CA N 109.2 109.4
CA C OXT 118.2 120.0
CA C O 117.9 120.0
C CA HA 111.2 109.5
N CA HA 108.5 109.4
CA N HN 109.5 111.0
CA N HNA 109.4 111.0
OXT C O 123.8 120.1
C O HO 109.5 117.0
HAA CAA HAAA 109.5 109.4
HAA CAA HAAB 109.4 109.5
HAAA CAA HAAB 109.5 109.5
HAP CAP HAPA 107.7 109.7
HAS CAS HASA 104.2 110.8
HB CB HBA 113.5 109.5
HN N HNA 109.5 111.1

Torsion Angles for DYH

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CAA NH CAH CAG 184.0 275.0
CAA NH CAH CAI 61.0 153.9
CAH NH CAA HNH 240.0 236.1
CAA NH CAH HAH 303.7 34.5
HAA CAA NH HAAA 240.0 240.0
HAA CAA NH HAAB 120.0 120.0
HAAA CAA NH HAAB 240.0 240.0
CAH NH CAA HAA 36.8 180.0
CAH NH CAA HAAA 156.8 300.0
CAH NH CAA HAAB 276.8 60.0
CAA NH CAH HNH 120.0 123.9
CAG CAH NH CAI 122.9 121.0
NH CAH CAG OAC 312.1 302.7
NH CAH CAG CAP 190.4 183.0
CAG CAH NH HAH 240.3 240.5
NH CAH CAG HAG 71.6 63.3
NH CAH CAI CAR 156.8 171.4
NH CAH CAI OAJ 38.8 52.3
CAI CAH NH HAH 117.4 119.5
NH CAH CAI HAI 274.5 292.2
NH CAH CAG CAI 236.8 239.7
CAG CAH NH HNH 63.9 151.0
NH CAH CAG HAH 119.4 119.5
CAG CAH CAI CAR 35.5 51.2
CAG CAH CAI OAJ 277.6 292.0
CAI CAH CAG HAH 242.6 239.8
CAG CAH CAI HAI 153.3 172.0
OAC CAG CAH CAP 121.7 119.7
OAC CAG CAH HAG 240.5 239.4
CAH CAG OAC HOAC 34.5 180.0
CAH CAG CAP OAQ 61.4 60.7
CAP CAG CAH HAG 118.8 119.7
CAH CAG CAP HAP 181.4 180.5
CAH CAG CAP HAPA 300.5 301.0
NH CAH CAI CAG 121.2 120.3
CAI CAH NH HNH 301.0 30.0
NH CAH CAI HAH 240.8 240.5
CAI CAH CAG OAC 75.4 63.0
CAI CAH CAG CAP 313.7 303.3
CAG CAH CAI HAH 119.6 120.3
CAI CAH CAG HAG 194.9 183.6
OAQ CAR CAI CAH 320.9 311.4
CAS CAR CAI CAH 205.0 199.2
CAR CAI CAH OAJ 117.9 119.2
CAH CAI CAR HAR 80.3 78.7
CAR CAI CAH HAI 242.3 239.2
CAH CAI OAJ CAK 146.1 148.3
OAJ CAI CAH HAI 124.3 120.0
OAC CAG CAH CAI 75.4 63.0
CAH CAG OAC CAP 236.6 241.2
OAC CAG CAH HAH 192.7 183.2
CAH CAG OAC HAG 117.7 120.6
OAC CAG CAP OAQ 298.7 301.0
CAP CAG OAC HAG 241.1 239.4
OAC CAG CAP HAP 58.7 60.8
OAC CAG CAP HAPA 177.8 181.2
CAP CAG CAH CAI 313.7 303.3
CAH CAG CAP OAC 122.6 119.7
CAP CAG CAH HAH 71.0 63.5
CAH CAG CAP HAG 242.3 240.3
OAC CAG CAP HAG 119.6 120.6
CAP CAG OAC HOAC 157.9 298.7
CAG CAP OAQ CAR 293.5 297.4
OAQ CAP CAG HAP 240.0 240.2
OAQ CAP CAG HAPA 120.9 119.7
HAP CAP CAG HAPA 240.9 239.5
OAQ CAP CAG HAG 179.1 180.4
CAG CAP OAQ HAP 120.0 119.8
CAG CAP OAQ HAPA 239.1 240.3
CAP OAQ CAR CAS 166.9 163.7
CAP OAQ CAR CAI 55.4 55.8
CAP OAQ CAR HAR 292.1 288.0
HAP CAP OAQ HAPA 119.1 120.5
CAH CAI CAR OAQ 320.9 311.4
CAR OAQ CAP HAP 173.5 177.6
CAR OAQ CAP HAPA 54.4 57.1
CAS CAR OAQ CAI 111.5 108.0
OAQ CAR CAS CAK 278.5 279.7
CAS CAR OAQ HAR 234.8 235.7
OAQ CAR CAS HAS 38.5 37.9
OAQ CAR CAS HASA 156.0 161.5
OAQ CAR CAI OAJ 79.9 74.4
CAI CAR OAQ HAR 123.3 127.7
OAQ CAR CAI HAI 204.3 190.6
CAH CAI CAR CAS 205.0 199.2
OAQ CAR CAS CAI 241.5 244.8
OAQ CAR CAS HAR 119.1 124.0
CAS CAR CAI OAJ 324.0 322.3
CAI CAR CAS HAR 237.6 239.2
CAS CAR CAI HAI 88.3 78.4
CAR CAS CAK OAJ 334.3 338.2
CAR CAS CAK CAE 96.0 97.7
CAR CAS CAK CB 219.7 218.8
CAK CAS CAR HAS 240.0 241.9
CAK CAS CAR HASA 122.5 118.2
HAS CAS CAR HASA 242.5 236.3
CAH CAI CAR OAJ 241.0 237.0
CAR CAI CAH HAH 276.0 290.9
CAH CAI CAR HAI 116.7 120.8
OAQ CAR CAI CAS 116.0 112.2
OAQ CAR CAI HAR 240.6 232.7
CAI CAR CAS CAK 37.0 34.9
CAS CAR CAI HAR 124.7 120.5
CAI CAR CAS HAS 157.0 153.0
CAI CAR CAS HASA 274.5 276.7
CAR CAI OAJ CAK 20.8 25.6
OAJ CAI CAR HAI 235.7 243.8
CAK CAS CAR CAI 37.0 34.9
CAK CAS CAR HAR 159.4 155.7
CAR CAS CAK HAS 120.0 118.2
CAR CAS CAK HASA 237.5 241.7
CAI OAJ CAK CAS 3.3 358.1
OAJ CAK CAS CAE 238.3 240.5
OAJ CAK CAS CB 114.6 119.4
CAE CAK CAS CB 236.4 239.0
CAS CAK CAE OAB 253.3 205.0
CAS CAK CAE OAF 74.3 25.0
CAS CAK CB CA 186.7 185.0
CAS CAK CB HB 306.8 304.9
CAS CAK CB HBA 69.0 65.0
HAS CAS CAK HASA 117.4 123.5
CAH CAI OAJ CAR 125.3 122.8
OAJ CAI CAH HAH 158.0 171.7
CAH CAI OAJ HAI 243.2 239.5
OAJ CAI CAR HAR 199.3 201.7
CAR CAI OAJ HAI 117.9 116.7
CAS CAK OAJ CAI 3.3 358.1
CAI OAJ CAK CAE 243.2 238.5
CAI OAJ CAK CB 120.6 117.5
CAS CAK OAJ CAE 120.1 119.6
CAS CAK OAJ CB 242.8 240.5
OAJ CAK CAS HAS 214.3 220.0
OAJ CAK CAS HASA 96.8 96.5
CAK OAJ CAI HAI 262.9 268.8
CAE CAK OAJ CB 122.6 121.0
OAJ CAK CAE OAB 11.7 323.1
OAJ CAK CAE OAF 192.7 143.1
OAJ CAK CB CA 71.7 67.0
OAJ CAK CB HB 191.7 186.9
OAJ CAK CB HBA 313.9 306.9
CAS CAK CAE OAJ 241.6 241.9
CAS CAK CAE CB 122.4 121.0
CAE CAK CAS HAS 336.0 339.5
CAE CAK CAS HASA 218.6 216.0
OAJ CAK CAE CB 240.8 239.1
CAE CAK CB CA 309.0 306.1
CAE CAK CB HB 69.0 66.0
CAE CAK CB HBA 191.2 186.0
OAB CAE CAK OAF 179.0 180.1
CAK CAE OAB HOAB 181.1 180.0
CAS CAK CB OAJ 115.1 118.0
CAS CAK CB CAE 237.8 239.0
CB CAK CAS HAS 99.6 100.6
CB CAK CAS HASA 342.2 337.0
OAJ CAK CB CAE 122.7 120.9
CB CAK CAE OAB 130.9 84.1
CB CAK CAE OAF 311.9 264.0
CAK CB CA C 161.8 175.0
CAK CB CA N 280.8 294.9
CA CB CAK HB 240.0 240.1
CA CB CAK HBA 117.7 120.1
CAK CB CA HA 40.5 54.9
HB CB CAK HBA 237.8 240.0
OAB CAE CAK CB 130.9 84.1
CAK CAE OAB OAF 181.1 179.9
OAF CAE CAK CB 311.9 264.0
CAK CAE OAF OAB 178.9 180.1
OAF CAE OAB HOAB 360.0 0.1
CAK CB CA HB 120.0 119.9
CAK CB CA HBA 242.2 239.9
C CA CB N 241.0 240.1
CB CA C OXT 124.7 99.9
CB CA C O 301.7 280.0
C CA CB HA 121.3 120.1
N CA CB HA 240.3 240.0
CB CA N HN 356.2 176.1
CB CA N HNA 116.2 300.1
HB CB CA HBA 122.2 120.0
CB CA C N 119.7 119.9
C CA CB HB 41.8 55.1
C CA CB HBA 279.6 295.1
CB CA C HA 239.4 239.9
N CA C HA 119.7 120.0
C CA N HN 114.2 296.0
C CA N HNA 234.2 60.1
OXT C CA O 183.0 180.0
CA C O HO 183.2 180.0
CB CA N C 242.0 240.0
N CA CB HB 160.8 175.0
N CA CB HBA 38.6 55.0
CB CA N HA 120.7 120.0
N CA C OXT 5.0 340.0
N CA C O 182.0 160.0
C CA N HA 238.7 240.0
HN N CA HNA 240.0 236.0
OXT C CA N 5.0 340.0
CA C OXT O 176.8 180.0
OXT C CA HA 245.3 220.1
OXT C O HO 0.0 0.0
O C CA N 182.0 160.0
CA C O OXT 183.2 180.0
O C CA HA 62.3 40.1
HAA CAA NH CAH 36.8 180.0
NH CAA HAA HAAA 120.0 120.0
NH CAA HAA HAAB 240.0 240.0
HAA CAA NH HNH 156.8 303.9
HAAA CAA HAA HAAB 120.0 120.0
HAAA CAA NH CAH 156.8 300.0
NH CAA HAAA HAA 240.0 240.0
NH CAA HAAA HAAB 120.0 120.0
HAAA CAA NH HNH 276.8 63.9
HAA CAA HAAA HAAB 240.0 240.0
HAAB CAA NH CAH 276.8 60.0
NH CAA HAAB HAA 120.0 120.0
NH CAA HAAB HAAA 240.0 239.9
HAAB CAA NH HNH 36.8 183.9
HAA CAA HAAB HAAA 120.0 120.0
CAA NH HNH CAH 235.1 236.1
HNH NH CAA HAA 156.8 303.9
HNH NH CAA HAAA 276.8 63.9
HNH NH CAA HAAB 36.8 183.9
HNH NH CAH CAG 63.9 151.0
HNH NH CAH CAI 301.0 30.0
HNH NH CAH HAH 183.7 270.5
NH CAH HAH CAG 241.2 240.5
NH CAH HAH CAI 120.8 119.5
HAH CAH NH HNH 183.7 270.5
CAG CAH HAH CAI 239.6 239.0
HAH CAH CAG OAC 192.7 183.2
HAH CAH CAG CAP 71.0 63.5
HAH CAH CAG HAG 312.3 303.8
HAH CAH CAI CAR 276.0 290.9
HAH CAH CAI OAJ 158.0 171.7
HAH CAH CAI HAI 33.7 51.7
HAG CAG CAH CAI 194.9 183.6
CAH CAG HAG OAC 239.9 239.4
CAH CAG HAG CAP 120.8 118.8
HAG CAG CAH HAH 312.3 303.8
OAC CAG HAG CAP 240.9 239.4
HAG CAG OAC HOAC 276.8 59.3
HAG CAG CAP OAQ 179.1 180.4
HAG CAG CAP HAP 299.1 300.2
HAG CAG CAP HAPA 58.2 60.6
HOAC OAC CAG CAP 157.9 298.7
HOAC OAC CAG HAG 276.8 59.3
CAG CAP HAP OAQ 241.8 240.8
HAP CAP CAG HAG 299.1 300.2
CAG CAP HAP HAPA 120.9 120.4
HAP CAP OAQ CAR 173.5 177.6
OAQ CAP HAP HAPA 239.1 239.5
CAG CAP HAPA OAQ 118.8 119.1
HAPA CAP CAG HAG 58.2 60.6
CAG CAP HAPA HAP 239.4 239.6
HAPA CAP OAQ CAR 54.4 57.1
OAQ CAP HAPA HAP 120.6 120.5
OAQ CAR HAR CAS 239.4 239.2
OAQ CAR HAR CAI 123.0 126.3
CAS CAR HAR CAI 243.7 247.0
HAR CAR CAS CAK 159.4 155.7
HAR CAR CAS HAS 279.5 273.8
HAR CAR CAS HASA 36.9 37.5
HAR CAR CAI OAJ 199.3 201.7
HAR CAR CAI HAI 323.6 317.9
HAS CAS CAR CAI 157.0 153.0
CAR CAS HAS CAK 245.7 247.3
HAS CAS CAR HAR 279.5 273.8
CAR CAS HAS HASA 122.8 123.7
HAS CAS CAK OAJ 214.3 220.0
HAS CAS CAK CAE 336.0 339.5
HAS CAS CAK CB 99.6 100.6
CAK CAS HAS HASA 237.2 236.4
HASA CAS CAR CAI 274.5 276.7
CAR CAS HASA CAK 116.3 112.7
HASA CAS CAR HAR 36.9 37.5
CAR CAS HASA HAS 238.1 236.3
HASA CAS CAK OAJ 96.8 96.5
HASA CAS CAK CAE 218.6 216.0
HASA CAS CAK CB 342.2 337.0
CAK CAS HASA HAS 121.9 123.6
CAH CAI HAI CAR 235.4 237.3
CAH CAI HAI OAJ 118.3 122.6
HAI CAI CAH HAH 33.7 51.7
CAR CAI HAI OAJ 242.8 245.3
HAI CAI CAR HAR 323.6 317.9
HAI CAI OAJ CAK 262.9 268.8
HOAB OAB CAE OAF 360.0 0.1
CAK CB HB CA 235.8 240.1
CAK CB HB HBA 117.9 120.1
HB CB CA C 41.8 55.1
HB CB CA N 160.8 175.0
CA CB HB HBA 242.1 240.0
HB CB CA HA 280.5 295.0
CAK CB HBA CA 122.9 120.1
CAK CB HBA HB 241.4 240.0
HBA CB CA C 279.6 295.1
HBA CB CA N 38.6 55.0
CA CB HBA HB 118.5 119.9
HBA CB CA HA 158.3 175.0
CB CA HA C 119.1 120.1
CB CA HA N 239.2 240.0
HA CA CB HB 280.5 295.0
HA CA CB HBA 158.3 175.0
C CA HA N 120.1 120.0
HA CA C OXT 245.3 220.1
HA CA C O 62.3 40.1
HA CA N HN 235.6 56.0
HA CA N HNA 355.5 180.1
HN N CA HA 235.6 56.0
CA N HN HNA 120.0 124.0
HNA N CA HA 355.5 180.1
CA N HNA HN 240.0 236.0