PDB Chemical Component DXW
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DXW
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C07 |
C04 |
1.515 |
1.506 |
| C04 |
C03 |
1.399 |
1.383 |
| C04 |
C05 |
1.389 |
1.388 |
| C03 |
C02 |
1.402 |
1.392 |
| C05 |
C06 |
1.399 |
1.380 |
| C02 |
N02 |
1.348 |
1.390 |
| C02 |
N01 |
1.359 |
1.324 |
| C3' |
C2' |
1.531 |
1.544 |
| C3' |
C08 |
1.535 |
1.530 |
| C3' |
C4' |
1.520 |
1.543 |
| C06 |
N01 |
1.354 |
1.320 |
| C06 |
C08 |
1.528 |
1.507 |
| C2' |
N1' |
1.469 |
1.485 |
| C4' |
O09 |
1.423 |
1.429 |
| C4' |
C5' |
1.539 |
1.544 |
| O09 |
C10 |
1.428 |
1.429 |
| C10 |
C11 |
1.520 |
1.531 |
| C11 |
N12 |
1.448 |
1.469 |
| N1' |
C5' |
1.465 |
1.486 |
| N12 |
C13 |
1.470 |
1.470 |
| C25 |
C24 |
1.383 |
1.414 |
| C25 |
C22 |
1.397 |
1.344 |
| C24 |
C23 |
1.384 |
1.345 |
| C13 |
C22 |
1.517 |
1.507 |
| C22 |
O21 |
1.378 |
1.344 |
| C23 |
O21 |
1.384 |
1.343 |
| N02 |
H1 |
1.000 |
0.970 |
| N02 |
H2 |
1.000 |
0.970 |
| C03 |
H3 |
1.080 |
1.080 |
| C05 |
H4 |
1.081 |
1.079 |
| C07 |
H5 |
1.100 |
1.090 |
| C07 |
H6 |
1.101 |
1.090 |
| C07 |
H7 |
1.100 |
1.090 |
| C08 |
H8 |
1.101 |
1.090 |
| C08 |
H9 |
1.100 |
1.091 |
| C3' |
H10 |
1.101 |
1.091 |
| C4' |
H11 |
1.100 |
1.090 |
| C5' |
H12 |
1.100 |
1.090 |
| C5' |
H13 |
1.100 |
1.090 |
| N1' |
H14 |
1.000 |
1.009 |
| C2' |
H16 |
1.100 |
1.090 |
| C2' |
H17 |
1.100 |
1.090 |
| C10 |
H18 |
1.100 |
1.091 |
| C10 |
H19 |
1.100 |
1.091 |
| C11 |
H20 |
1.100 |
1.090 |
| C11 |
H21 |
1.100 |
1.090 |
| N12 |
H22 |
1.000 |
1.009 |
| C13 |
H24 |
1.100 |
1.090 |
| C13 |
H25 |
1.100 |
1.089 |
| C23 |
H26 |
1.080 |
1.079 |
| C24 |
H27 |
1.080 |
1.081 |
| C25 |
H28 |
1.080 |
1.080 |
Bond Angles for DXW
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C04 |
C03 |
H3 |
120.5 |
120.5 |
| C04 |
C05 |
C06 |
120.1 |
119.3 |
| C04 |
C05 |
H4 |
120.0 |
120.3 |
| C03 |
C02 |
N01 |
120.8 |
120.6 |
| C05 |
C06 |
N01 |
120.2 |
120.9 |
| C05 |
C06 |
C08 |
120.0 |
119.6 |
| C06 |
C05 |
H4 |
120.0 |
120.3 |
| C02 |
N02 |
H1 |
109.5 |
120.0 |
| C02 |
N02 |
H2 |
109.5 |
120.0 |
| C4' |
C3' |
C2' |
101.9 |
105.1 |
| C3' |
C2' |
N1' |
104.0 |
104.6 |
| C2' |
C3' |
H10 |
111.9 |
110.4 |
| C3' |
C2' |
H16 |
111.3 |
110.4 |
| C3' |
C2' |
H17 |
111.3 |
110.4 |
| C3' |
C08 |
H8 |
109.0 |
109.5 |
| C3' |
C08 |
H9 |
109.1 |
109.5 |
| C3' |
C4' |
O09 |
108.9 |
110.3 |
| C3' |
C4' |
C5' |
105.3 |
105.0 |
| C4' |
C3' |
H10 |
115.8 |
110.4 |
| C3' |
C4' |
H11 |
114.6 |
110.3 |
| C06 |
C08 |
H8 |
109.0 |
109.5 |
| C06 |
C08 |
H9 |
109.0 |
109.5 |
| C2' |
N1' |
H14 |
108.4 |
111.0 |
| C5' |
C4' |
O09 |
114.9 |
110.3 |
| C4' |
O09 |
C10 |
113.0 |
114.0 |
| O09 |
C4' |
H11 |
104.9 |
110.3 |
| C5' |
C4' |
H11 |
108.5 |
110.4 |
| C4' |
C5' |
H12 |
112.1 |
110.4 |
| C4' |
C5' |
H13 |
112.1 |
110.4 |
| O09 |
C10 |
C11 |
105.1 |
109.5 |
| O09 |
C10 |
H18 |
110.9 |
109.5 |
| O09 |
C10 |
H19 |
110.9 |
109.5 |
| C10 |
C11 |
N12 |
110.3 |
109.4 |
| C11 |
C10 |
H18 |
111.0 |
109.5 |
| C11 |
C10 |
H19 |
111.0 |
109.5 |
| C10 |
C11 |
H20 |
109.2 |
109.5 |
| C10 |
C11 |
H21 |
109.2 |
109.4 |
| C11 |
N12 |
C13 |
120.4 |
111.0 |
| N12 |
C11 |
H20 |
109.2 |
109.5 |
| N12 |
C11 |
H21 |
109.2 |
109.5 |
| C11 |
N12 |
H22 |
106.0 |
111.0 |
| N1' |
C5' |
H12 |
112.1 |
110.5 |
| N1' |
C5' |
H13 |
112.1 |
110.5 |
| N12 |
C13 |
C22 |
112.0 |
109.4 |
| C13 |
N12 |
H22 |
106.0 |
111.0 |
| N12 |
C13 |
H24 |
108.6 |
109.5 |
| N12 |
C13 |
H25 |
108.6 |
109.4 |
| C25 |
C24 |
H27 |
126.2 |
126.6 |
| C24 |
C23 |
H26 |
125.7 |
125.8 |
| C13 |
C22 |
O21 |
126.5 |
125.7 |
| C22 |
C13 |
H24 |
108.7 |
109.5 |
| C22 |
C13 |
H25 |
108.7 |
109.5 |
| H1 |
N02 |
H2 |
109.5 |
120.0 |
| H5 |
C07 |
H6 |
109.5 |
109.4 |
| H5 |
C07 |
H7 |
109.5 |
109.4 |
| H6 |
C07 |
H7 |
109.5 |
109.5 |
| H8 |
C08 |
H9 |
109.9 |
109.5 |
| H12 |
C5' |
H13 |
106.7 |
110.3 |
| H16 |
C2' |
H17 |
107.6 |
110.5 |
| H18 |
C10 |
H19 |
107.9 |
109.4 |
| H20 |
C11 |
H21 |
109.8 |
109.5 |
| H24 |
C13 |
H25 |
110.3 |
109.5 |
Torsion Angles for DXW
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C07 |
C04 |
C03 |
H3 |
359.7 |
360.0 |
| C07 |
C04 |
C05 |
C06 |
180.4 |
180.1 |
| C07 |
C04 |
C05 |
H4 |
0.4 |
360.0 |
| C04 |
C03 |
C02 |
N01 |
0.5 |
0.3 |
| C05 |
C04 |
C03 |
H3 |
178.8 |
180.0 |
| C04 |
C05 |
C06 |
N01 |
359.3 |
359.7 |
| C04 |
C05 |
C06 |
C08 |
180.6 |
180.0 |
| C06 |
C05 |
C04 |
H4 |
180.0 |
180.1 |
| C03 |
C02 |
N02 |
H1 |
180.2 |
180.3 |
| C03 |
C02 |
N02 |
H2 |
300.2 |
360.0 |
| C04 |
C05 |
C06 |
H4 |
180.0 |
179.9 |
| C05 |
C06 |
C08 |
H8 |
328.1 |
245.0 |
| C05 |
C06 |
C08 |
H9 |
208.1 |
5.0 |
| H1 |
N02 |
C02 |
H2 |
240.0 |
180.3 |
| C05 |
C06 |
N01 |
C02 |
359.9 |
0.6 |
| N01 |
C02 |
N02 |
H1 |
360.0 |
360.0 |
| N01 |
C02 |
N02 |
H2 |
120.0 |
179.7 |
| C2' |
C3' |
C08 |
H8 |
184.5 |
306.4 |
| C2' |
C3' |
C08 |
H9 |
304.6 |
186.5 |
| C2' |
C3' |
C4' |
O09 |
161.8 |
118.9 |
| C2' |
C3' |
C4' |
C5' |
38.1 |
360.0 |
| C4' |
C3' |
C2' |
H10 |
124.3 |
119.0 |
| C2' |
C3' |
C4' |
H11 |
278.9 |
241.0 |
| C3' |
C2' |
N1' |
H14 |
132.9 |
80.1 |
| H16 |
C2' |
C3' |
H17 |
240.0 |
237.6 |
| C06 |
C08 |
C3' |
H8 |
240.0 |
120.0 |
| C06 |
C08 |
C3' |
H9 |
120.0 |
240.0 |
| H8 |
C08 |
C3' |
H9 |
240.0 |
120.0 |
| C4' |
C3' |
C2' |
N1' |
329.2 |
23.9 |
| C2' |
C3' |
C4' |
H10 |
238.3 |
241.0 |
| C4' |
C3' |
C2' |
H16 |
89.2 |
142.7 |
| C4' |
C3' |
C2' |
H17 |
209.2 |
265.1 |
| C4' |
C3' |
C08 |
H8 |
297.5 |
62.1 |
| C4' |
C3' |
C08 |
H9 |
57.5 |
302.1 |
| C5' |
C4' |
C3' |
O09 |
236.3 |
241.1 |
| C3' |
C4' |
O09 |
C10 |
149.5 |
150.0 |
| O09 |
C4' |
C3' |
H11 |
242.9 |
237.8 |
| C5' |
C4' |
C3' |
H11 |
119.2 |
119.0 |
| C3' |
C4' |
C5' |
H12 |
89.8 |
95.0 |
| C3' |
C4' |
C5' |
H13 |
209.8 |
217.2 |
| C05 |
C06 |
N01 |
C08 |
181.2 |
180.3 |
| N01 |
C06 |
C05 |
H4 |
179.3 |
179.8 |
| C05 |
C06 |
C08 |
N01 |
178.8 |
179.7 |
| C08 |
C06 |
C05 |
H4 |
0.6 |
0.0 |
| C3' |
C08 |
C06 |
H8 |
120.0 |
240.0 |
| C3' |
C08 |
C06 |
H9 |
240.0 |
120.0 |
| H8 |
C08 |
C06 |
H9 |
120.0 |
240.0 |
| N1' |
C2' |
C3' |
H10 |
204.9 |
264.9 |
| C3' |
C2' |
N1' |
H16 |
120.0 |
118.7 |
| C3' |
C2' |
N1' |
H17 |
240.0 |
241.2 |
| C2' |
N1' |
C5' |
H12 |
250.5 |
280.7 |
| C2' |
N1' |
C5' |
H13 |
130.5 |
158.3 |
| O09 |
C4' |
C3' |
C2' |
161.8 |
118.9 |
| C3' |
C4' |
O09 |
C5' |
242.2 |
244.4 |
| O09 |
C4' |
C3' |
H10 |
283.5 |
237.8 |
| C3' |
C4' |
O09 |
H11 |
123.1 |
122.1 |
| C5' |
C4' |
O09 |
H11 |
240.9 |
237.7 |
| O09 |
C4' |
C5' |
H12 |
330.0 |
336.1 |
| O09 |
C4' |
C5' |
H13 |
90.0 |
98.4 |
| C4' |
O09 |
C10 |
C11 |
181.7 |
180.0 |
| C4' |
O09 |
C10 |
H18 |
301.7 |
300.1 |
| C4' |
O09 |
C10 |
H19 |
61.7 |
60.0 |
| C5' |
C4' |
C3' |
C2' |
38.1 |
360.0 |
| C3' |
C4' |
C5' |
O09 |
119.8 |
118.9 |
| C5' |
C4' |
C3' |
H10 |
159.8 |
119.0 |
| C3' |
C4' |
C5' |
H11 |
236.9 |
241.1 |
| C5' |
C4' |
O09 |
C10 |
267.2 |
265.6 |
| O09 |
C4' |
C5' |
H11 |
117.1 |
122.2 |
| N1' |
C5' |
C4' |
H12 |
240.0 |
241.2 |
| N1' |
C5' |
C4' |
H13 |
120.0 |
118.9 |
| H12 |
C5' |
C4' |
H13 |
240.0 |
237.7 |
| C10 |
O09 |
C4' |
H11 |
26.3 |
27.8 |
| O09 |
C10 |
C11 |
N12 |
285.1 |
65.0 |
| C11 |
C10 |
O09 |
H18 |
240.0 |
240.0 |
| C11 |
C10 |
O09 |
H19 |
120.0 |
120.0 |
| O09 |
C10 |
C11 |
H20 |
45.1 |
185.1 |
| O09 |
C10 |
C11 |
H21 |
165.1 |
305.0 |
| H18 |
C10 |
O09 |
H19 |
240.0 |
240.1 |
| O09 |
C10 |
C11 |
H18 |
120.0 |
120.1 |
| O09 |
C10 |
C11 |
H19 |
240.0 |
240.0 |
| C10 |
C11 |
N12 |
C13 |
286.8 |
180.0 |
| N12 |
C11 |
C10 |
H20 |
240.0 |
239.9 |
| N12 |
C11 |
C10 |
H21 |
120.0 |
120.0 |
| C10 |
C11 |
N12 |
H22 |
46.8 |
304.0 |
| H18 |
C10 |
C11 |
H19 |
120.0 |
119.9 |
| H20 |
C11 |
C10 |
H21 |
240.0 |
240.1 |
| N12 |
C11 |
C10 |
H18 |
165.1 |
304.9 |
| N12 |
C11 |
C10 |
H19 |
45.1 |
185.0 |
| C10 |
C11 |
N12 |
H20 |
120.0 |
120.0 |
| C10 |
C11 |
N12 |
H21 |
240.0 |
240.1 |
| C11 |
N12 |
C13 |
C22 |
286.0 |
180.0 |
| C13 |
N12 |
C11 |
H22 |
240.0 |
236.0 |
| C11 |
N12 |
C13 |
H24 |
46.0 |
300.0 |
| C11 |
N12 |
C13 |
H25 |
166.0 |
60.0 |
| H20 |
C11 |
N12 |
H21 |
120.0 |
120.1 |
| C3' |
C2' |
N1' |
C5' |
12.9 |
320.5 |
| N1' |
C5' |
C4' |
O09 |
210.0 |
217.3 |
| N1' |
C5' |
C4' |
H11 |
93.0 |
95.1 |
| C4' |
C5' |
N1' |
H12 |
120.0 |
118.8 |
| C4' |
C5' |
N1' |
H13 |
240.0 |
241.2 |
| H12 |
C5' |
N1' |
H13 |
120.0 |
122.4 |
| C13 |
N12 |
C11 |
H20 |
166.8 |
60.0 |
| C13 |
N12 |
C11 |
H21 |
46.8 |
300.0 |
| C11 |
N12 |
C13 |
H22 |
120.0 |
124.0 |
| N12 |
C13 |
C22 |
O21 |
302.2 |
270.0 |
| C22 |
C13 |
N12 |
H24 |
240.0 |
240.0 |
| C22 |
C13 |
N12 |
H25 |
120.0 |
120.0 |
| H24 |
C13 |
N12 |
H25 |
240.0 |
240.0 |
| C25 |
C24 |
C23 |
H26 |
179.7 |
179.7 |
| C25 |
C22 |
C13 |
H24 |
1.7 |
329.8 |
| C25 |
C22 |
C13 |
H25 |
241.6 |
209.7 |
| C22 |
C13 |
N12 |
H22 |
166.0 |
56.1 |
| N12 |
C13 |
C22 |
H24 |
120.0 |
120.0 |
| N12 |
C13 |
C22 |
H25 |
240.0 |
240.0 |
| H24 |
C13 |
C22 |
H25 |
120.1 |
120.1 |
| O21 |
C22 |
C13 |
H24 |
182.2 |
150.0 |
| O21 |
C22 |
C13 |
H25 |
62.2 |
29.9 |
| C02 |
N02 |
H1 |
H2 |
120.0 |
179.7 |
| C02 |
N02 |
H2 |
H1 |
239.9 |
180.3 |
| H3 |
C03 |
C02 |
N01 |
180.5 |
180.3 |
| C04 |
C05 |
H4 |
C06 |
180.0 |
180.1 |
| H4 |
C05 |
C06 |
N01 |
179.3 |
179.8 |
| H4 |
C05 |
C06 |
C08 |
0.6 |
0.0 |
| H6 |
C07 |
H5 |
H7 |
120.0 |
120.0 |
| H5 |
C07 |
H6 |
H7 |
240.0 |
240.1 |
| H5 |
C07 |
H7 |
H6 |
120.0 |
119.9 |
| C3' |
C08 |
H8 |
H9 |
119.5 |
240.0 |
| C06 |
C08 |
H8 |
H9 |
240.5 |
120.0 |
| C3' |
C08 |
H9 |
H8 |
240.5 |
120.0 |
| C06 |
C08 |
H9 |
H8 |
119.5 |
240.0 |
| C4' |
C3' |
H10 |
C2' |
243.9 |
244.3 |
| H10 |
C3' |
C2' |
N1' |
204.9 |
264.9 |
| H10 |
C3' |
C2' |
H16 |
324.9 |
23.6 |
| H10 |
C3' |
C2' |
H17 |
84.9 |
146.1 |
| H10 |
C3' |
C08 |
H8 |
62.2 |
184.3 |
| H10 |
C3' |
C08 |
H9 |
182.2 |
64.3 |
| H10 |
C3' |
C4' |
O09 |
283.5 |
237.8 |
| H10 |
C3' |
C4' |
C5' |
159.8 |
119.0 |
| H10 |
C3' |
C4' |
H11 |
40.6 |
360.0 |
| H11 |
C4' |
C3' |
C2' |
278.9 |
241.0 |
| C3' |
C4' |
H11 |
O09 |
240.6 |
237.8 |
| C3' |
C4' |
H11 |
C5' |
117.3 |
115.6 |
| H11 |
C4' |
C3' |
H10 |
40.6 |
360.0 |
| C5' |
C4' |
H11 |
O09 |
123.3 |
122.2 |
| H11 |
C4' |
O09 |
C10 |
26.3 |
27.8 |
| H11 |
C4' |
C5' |
H12 |
213.0 |
213.9 |
| H11 |
C4' |
C5' |
H13 |
333.0 |
336.2 |
| H12 |
C5' |
C4' |
O09 |
330.0 |
336.1 |
| H12 |
C5' |
C4' |
H11 |
213.0 |
213.9 |
| C4' |
C5' |
H12 |
H13 |
123.1 |
122.3 |
| N1' |
C5' |
H12 |
H13 |
236.9 |
237.5 |
| H13 |
C5' |
C4' |
O09 |
90.0 |
98.4 |
| H13 |
C5' |
C4' |
H11 |
333.0 |
336.2 |
| C4' |
C5' |
H13 |
H12 |
236.9 |
237.7 |
| N1' |
C5' |
H13 |
H12 |
123.1 |
122.5 |
| H14 |
N1' |
C5' |
H12 |
130.5 |
161.1 |
| H14 |
N1' |
C5' |
H13 |
10.5 |
38.7 |
| C3' |
C2' |
H16 |
N1' |
244.4 |
244.8 |
| H16 |
C2' |
C3' |
H10 |
324.9 |
23.6 |
| C3' |
C2' |
H16 |
H17 |
122.2 |
122.4 |
| H16 |
C2' |
N1' |
H14 |
12.9 |
321.4 |
| C3' |
C2' |
H17 |
N1' |
115.6 |
115.2 |
| H17 |
C2' |
C3' |
H10 |
84.9 |
146.1 |
| C3' |
C2' |
H17 |
H16 |
237.8 |
237.6 |
| H17 |
C2' |
N1' |
H14 |
252.9 |
198.9 |
| O09 |
C10 |
H18 |
C11 |
243.5 |
239.9 |
| O09 |
C10 |
H18 |
H19 |
121.7 |
120.0 |
| H18 |
C10 |
C11 |
N12 |
165.1 |
304.9 |
| C11 |
C10 |
H18 |
H19 |
238.2 |
240.1 |
| H18 |
C10 |
C11 |
H20 |
285.1 |
65.0 |
| H18 |
C10 |
C11 |
H21 |
45.1 |
184.9 |
| O09 |
C10 |
H19 |
C11 |
116.5 |
120.1 |
| O09 |
C10 |
H19 |
H18 |
238.2 |
240.0 |
| H19 |
C10 |
C11 |
N12 |
45.1 |
185.0 |
| C11 |
C10 |
H19 |
H18 |
121.8 |
120.0 |
| H19 |
C10 |
C11 |
H20 |
165.1 |
305.1 |
| H19 |
C10 |
C11 |
H21 |
285.1 |
65.0 |
| C10 |
C11 |
H20 |
N12 |
239.3 |
240.0 |
| H20 |
C11 |
C10 |
H18 |
285.1 |
65.0 |
| H20 |
C11 |
C10 |
H19 |
165.1 |
305.1 |
| C10 |
C11 |
H20 |
H21 |
119.6 |
119.9 |
| H20 |
C11 |
N12 |
C13 |
166.8 |
60.0 |
| N12 |
C11 |
H20 |
H21 |
240.4 |
239.9 |
| H20 |
C11 |
N12 |
H22 |
286.8 |
184.0 |
| C10 |
C11 |
H21 |
N12 |
120.7 |
119.9 |
| H21 |
C11 |
C10 |
H18 |
45.1 |
184.9 |
| H21 |
C11 |
C10 |
H19 |
285.1 |
65.0 |
| C10 |
C11 |
H21 |
H20 |
240.3 |
240.1 |
| H21 |
C11 |
N12 |
C13 |
46.8 |
300.0 |
| N12 |
C11 |
H21 |
H20 |
119.6 |
120.1 |
| H21 |
C11 |
N12 |
H22 |
166.8 |
63.9 |
| C11 |
N12 |
H22 |
C13 |
231.0 |
236.1 |
| H22 |
N12 |
C11 |
H20 |
286.8 |
184.0 |
| H22 |
N12 |
C11 |
H21 |
166.8 |
63.9 |
| H22 |
N12 |
C13 |
C22 |
166.0 |
56.1 |
| H22 |
N12 |
C13 |
H24 |
286.0 |
176.0 |
| H22 |
N12 |
C13 |
H25 |
46.0 |
296.0 |
| N12 |
C13 |
H24 |
C22 |
238.0 |
240.1 |
| H24 |
C13 |
N12 |
H22 |
286.0 |
176.0 |
| N12 |
C13 |
H24 |
H25 |
118.9 |
120.0 |
| H24 |
C13 |
C22 |
O21 |
182.2 |
150.0 |
| C22 |
C13 |
H24 |
H25 |
241.0 |
239.9 |
| N12 |
C13 |
H25 |
C22 |
122.0 |
120.0 |
| H25 |
C13 |
N12 |
H22 |
46.0 |
296.0 |
| N12 |
C13 |
H25 |
H24 |
241.1 |
240.0 |
| H25 |
C13 |
C22 |
O21 |
62.2 |
29.9 |
| C22 |
C13 |
H25 |
H24 |
119.0 |
120.1 |
| H27 |
C24 |
C23 |
H26 |
359.7 |
360.0 |
| H28 |
C25 |
C24 |
H27 |
0.3 |
359.7 |