PDB Chemical Component DXP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DXP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.475	1.507
C1	HC11	1.115	1.089
C1	HC12	1.116	1.089
C1	HC13	1.115	1.090
C2	C3	1.502	1.506
C2	O2	1.230	1.207
C3	C4	1.539	1.529
C3	O3	1.415	1.428
C3	HC3	1.115	1.091
C4	C5	1.524	1.529
C4	O4	1.431	1.429
C4	HC4	1.115	1.090
C5	O5	1.441	1.429
C5	H51	1.116	1.090
C5	H52	1.114	1.089
O3	HO3	0.951	0.967
O4	HO4	0.949	0.967
O5	P	1.500	1.609
P	O2P	1.503	1.610
P	O1P	1.495	1.610
P	O3P	1.349	1.479
O2P	HOP2	0.951	0.967
O1P	HOP1	0.951	0.968

Bond Angles for DXP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	HC11	119.9	109.5
C2	C1	HC12	108.5	109.5
C2	C1	HC13	108.4	109.5
C1	C2	C3	119.9	120.0
C1	C2	O2	118.5	120.0
HC11	C1	HC12	108.5	109.5
HC11	C1	HC13	108.5	109.5
HC12	C1	HC13	101.5	109.4
C3	C2	O2	121.5	120.0
C2	C3	C4	117.1	109.5
C2	C3	O3	107.7	109.5
C2	C3	HC3	105.0	109.5
C4	C3	O3	107.9	109.5
C4	C3	HC3	104.7	109.4
C3	C4	C5	108.1	109.5
C3	C4	O4	108.9	109.4
C3	C4	HC4	110.2	109.5
O3	C3	HC3	114.7	109.4
C3	O3	HO3	107.6	106.7
C5	C4	O4	107.8	109.5
C5	C4	HC4	111.2	109.5
C4	C5	O5	112.6	109.5
C4	C5	H51	111.1	109.5
C4	C5	H52	111.1	109.5
O4	C4	HC4	110.5	109.4
C4	O4	HO4	108.8	106.8
O5	C5	H51	111.1	109.4
O5	C5	H52	111.1	109.5
C5	O5	P	112.0	106.9
H51	C5	H52	99.2	109.5
O5	P	O2P	112.7	109.5
O5	P	O1P	110.3	109.5
O5	P	O3P	110.2	109.5
O2P	P	O1P	109.0	109.5
O2P	P	O3P	105.1	109.4
P	O2P	HOP2	112.7	106.8
O1P	P	O3P	109.3	109.5
P	O1P	HOP1	110.3	106.8

Torsion Angles for DXP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
HC11	C1	C2	HC12	234.7	240.0
HC11	C1	C2	HC13	125.3	120.1
HC12	C1	C2	HC13	250.6	240.0
C3	C2	C1	O2	180.8	180.0
C1	C2	C3	C4	272.4	270.0
C1	C2	C3	O3	150.6	149.9
C1	C2	C3	HC3	28.0	30.0
C2	C1	HC11	HC12	125.3	120.0
C2	C1	HC11	HC13	234.7	240.0
HC11	C1	C2	C3	180.0	180.0
HC11	C1	C2	O2	359.2	360.0
HC12	C1	HC11	HC13	109.4	120.0
C2	C1	HC12	HC11	228.2	240.0
C2	C1	HC12	HC13	114.1	120.0
HC12	C1	C2	C3	305.3	300.0
HC12	C1	C2	O2	124.4	120.0
HC11	C1	HC12	HC13	245.9	240.0
C2	C1	HC13	HC11	131.8	120.0
C2	C1	HC13	HC12	245.9	240.0
HC13	C1	C2	C3	54.7	60.0
HC13	C1	C2	O2	233.8	239.9
HC11	C1	HC13	HC12	114.1	120.0
C3	C2	C1	HC11	180.0	180.0
C3	C2	C1	HC12	305.3	300.0
C3	C2	C1	HC13	54.7	60.0
C1	C2	C3	O2	179.1	180.0
C4	C3	C2	O3	121.8	120.1
C4	C3	C2	HC3	244.4	240.0
C2	C3	C4	C5	166.3	180.0
C2	C3	C4	O4	283.2	300.0
C2	C3	C4	HC4	44.6	60.0
O3	C3	C2	HC3	122.6	119.9
C2	C3	O3	HO3	180.0	60.0
O2	C2	C1	HC11	359.2	360.0
O2	C2	C1	HC12	124.4	120.0
O2	C2	C1	HC13	233.8	239.9
C1	C2	O2	C3	180.9	180.0
O2	C2	C3	C4	93.3	90.1
O2	C2	C3	O3	331.5	330.0
O2	C2	C3	HC3	208.9	210.0
C4	C3	C2	O2	93.3	90.1
C2	C3	C4	O3	238.4	239.9
C2	C3	C4	HC3	115.8	120.0
O3	C3	C4	HC3	237.4	240.1
C4	C3	O3	HO3	52.7	299.9
C5	C4	C3	O4	243.1	240.0
C5	C4	C3	HC4	121.7	120.1
C3	C4	C5	O5	177.4	180.0
C3	C4	C5	H51	302.7	299.9
C3	C4	C5	H52	52.2	59.9
O4	C4	C3	HC4	238.6	240.0
C3	C4	O4	HO4	180.0	300.0
O3	C3	C2	O2	331.5	330.0
C2	C3	O3	C4	127.3	120.1
C2	C3	O3	HC3	243.5	240.0
C4	C3	O3	HC3	116.3	119.9
O3	C3	C4	C5	287.9	300.1
O3	C3	C4	O4	44.8	60.1
O3	C3	C4	HC4	166.2	180.1
HC3	C3	C2	O2	208.9	210.0
C2	C3	HC3	C4	236.1	240.0
C2	C3	HC3	O3	118.0	120.0
C4	C3	HC3	O3	241.9	240.0
HC3	C3	C4	C5	50.5	60.0
HC3	C3	C4	O4	167.4	180.0
HC3	C3	C4	HC4	288.8	300.0
HC3	C3	O3	HO3	296.5	180.0
C5	C4	C3	O3	287.9	300.1
C5	C4	C3	HC3	50.5	60.0
C3	C4	C5	O4	117.6	120.0
C3	C4	C5	HC4	238.9	239.9
O4	C4	C5	HC4	121.3	120.0
C5	C4	O4	HO4	297.1	60.0
O5	C5	C4	H51	234.7	240.1
O5	C5	C4	H52	125.3	120.0
C4	C5	O5	P	182.3	180.0
H51	C5	C4	H52	250.5	240.0
O4	C4	C3	O3	44.8	60.1
O4	C4	C3	HC3	167.4	180.0
C3	C4	O4	C5	243.0	240.0
C3	C4	O4	HC4	121.2	120.0
C5	C4	O4	HC4	238.3	240.0
O4	C4	C5	O5	59.9	60.0
O4	C4	C5	H51	185.2	180.0
O4	C4	C5	H52	294.6	300.0
HC4	C4	C3	O3	166.2	180.1
HC4	C4	C3	HC3	288.8	300.0
C3	C4	HC4	C5	119.9	120.1
C3	C4	HC4	O4	239.6	240.0
C5	C4	HC4	O4	119.7	120.0
HC4	C4	C5	O5	298.5	300.0
HC4	C4	C5	H51	63.8	60.0
HC4	C4	C5	H52	173.3	180.0
HC4	C4	O4	HO4	58.8	179.9
O5	C5	C4	O4	59.9	60.0
O5	C5	C4	HC4	298.5	300.0
C4	C5	O5	H51	125.3	120.0
C4	C5	O5	H52	234.7	239.9
H51	C5	O5	H52	109.4	119.9
C5	O5	P	O2P	304.7	180.0
C5	O5	P	O1P	182.7	300.0
C5	O5	P	O3P	61.8	60.0
H51	C5	C4	O4	185.2	180.0
H51	C5	C4	HC4	63.8	60.0
C4	C5	H51	O5	233.9	240.0
C4	C5	H51	H52	116.9	120.1
O5	C5	H51	H52	243.1	240.1
H51	C5	O5	P	57.0	60.0
H52	C5	C4	O4	294.6	300.0
H52	C5	C4	HC4	173.3	180.0
C4	C5	H52	O5	126.1	120.1
C4	C5	H52	H51	243.0	240.0
O5	C5	H52	H51	116.9	119.9
H52	C5	O5	P	307.5	300.0
HO3	O3	C3	HC3	296.5	180.0
HO4	O4	C4	HC4	58.8	179.9
P	O5	C5	H51	57.0	60.0
P	O5	C5	H52	307.5	300.0
O2P	P	O5	O1P	122.1	240.0
O2P	P	O5	O3P	242.9	120.0
O5	P	O2P	HOP2	180.0	180.0
O1P	P	O5	O3P	120.9	240.0
O5	P	O1P	HOP1	180.0	300.0
O5	P	O2P	O1P	237.2	120.0
O5	P	O2P	O3P	120.1	240.0
O1P	P	O2P	O3P	242.9	120.0
O2P	P	O1P	HOP1	55.8	60.0
O5	P	O1P	O2P	124.2	239.9
O5	P	O1P	O3P	238.6	120.0
O2P	P	O1P	O3P	114.4	240.1
O1P	P	O2P	HOP2	302.8	60.0
O5	P	O3P	O2P	238.3	120.0
O5	P	O3P	O1P	121.4	240.0
O2P	P	O3P	O1P	243.1	120.0
O3P	P	O2P	HOP2	59.9	300.0
O3P	P	O1P	HOP1	301.4	180.0
HOP2	O2P	P	O1P	302.8	60.0
HOP2	O2P	P	O3P	59.9	300.0
HOP1	O1P	P	O3P	301.4	180.0