PDB Chemical Component DX4
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DX4
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C4 |
C5 |
1.402 |
1.400 |
C4 |
N3 |
1.343 |
1.338 |
C4 |
N9 |
1.339 |
1.369 |
C5 |
C6 |
1.402 |
1.414 |
C5 |
N7 |
1.332 |
1.355 |
C6 |
N1 |
1.349 |
1.351 |
C6 |
S6 |
1.781 |
1.712 |
C8 |
N9 |
1.354 |
1.365 |
C8 |
N7 |
1.343 |
1.301 |
C8 |
H8 |
1.080 |
1.080 |
N1 |
C2 |
1.356 |
1.363 |
N1 |
H5 |
1.000 |
0.971 |
N2 |
C2 |
1.313 |
1.372 |
N2 |
HN2 |
1.001 |
0.970 |
N2 |
HN2A |
1.000 |
0.970 |
N3 |
C2 |
1.348 |
1.315 |
N9 |
HN9 |
1.000 |
0.970 |
Bond Angles for DX4
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C5 |
C4 |
N3 |
119.1 |
119.7 |
C5 |
C4 |
N9 |
107.9 |
106.1 |
C4 |
C5 |
C6 |
119.1 |
118.6 |
C4 |
C5 |
N7 |
106.7 |
107.3 |
N3 |
C4 |
N9 |
133.0 |
134.2 |
C4 |
N3 |
C2 |
120.9 |
121.1 |
C4 |
N9 |
C8 |
107.5 |
107.5 |
C4 |
N9 |
HN9 |
126.3 |
126.2 |
C6 |
C5 |
N7 |
134.2 |
134.2 |
C5 |
C6 |
N1 |
119.2 |
118.4 |
C5 |
C6 |
S6 |
121.8 |
120.8 |
C5 |
N7 |
C8 |
108.9 |
109.3 |
N1 |
C6 |
S6 |
119.0 |
120.8 |
C6 |
N1 |
C2 |
120.3 |
120.4 |
C6 |
N1 |
H5 |
119.9 |
119.8 |
N9 |
C8 |
N7 |
109.0 |
109.8 |
N9 |
C8 |
H8 |
125.5 |
125.1 |
C8 |
N9 |
HN9 |
126.2 |
126.3 |
N7 |
C8 |
H8 |
125.5 |
125.1 |
C2 |
N1 |
H5 |
119.8 |
119.8 |
N1 |
C2 |
N2 |
120.0 |
119.1 |
N1 |
C2 |
N3 |
121.3 |
121.9 |
C2 |
N2 |
HN2 |
110.5 |
120.0 |
C2 |
N2 |
HN2A |
124.7 |
120.0 |
N2 |
C2 |
N3 |
118.7 |
119.1 |
HN2 |
N2 |
HN2A |
124.8 |
120.0 |
Torsion Angles for DX4
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N3 |
C4 |
C5 |
N9 |
179.7 |
179.8 |
C5 |
C4 |
N3 |
C2 |
359.5 |
360.0 |
C5 |
C4 |
N9 |
C8 |
0.1 |
0.1 |
C5 |
C4 |
N9 |
HN9 |
180.1 |
180.0 |
C6 |
C5 |
C4 |
N7 |
180.4 |
180.0 |
C4 |
C5 |
C6 |
N1 |
0.5 |
0.1 |
C4 |
C5 |
C6 |
S6 |
179.1 |
179.9 |
C4 |
C5 |
N7 |
C8 |
0.2 |
359.6 |
C5 |
C4 |
N3 |
N9 |
180.3 |
180.2 |
N3 |
C4 |
C5 |
C6 |
360.0 |
360.0 |
N3 |
C4 |
C5 |
N7 |
179.6 |
180.0 |
N3 |
C4 |
N9 |
C8 |
180.4 |
180.3 |
N3 |
C4 |
N9 |
HN9 |
0.4 |
0.2 |
N1 |
C2 |
N3 |
C4 |
0.6 |
360.0 |
N2 |
C2 |
N3 |
C4 |
180.3 |
180.0 |
C5 |
C4 |
N9 |
N3 |
179.7 |
179.8 |
N9 |
C4 |
C5 |
C6 |
180.3 |
180.2 |
N9 |
C4 |
C5 |
N7 |
359.8 |
0.2 |
N9 |
C4 |
N3 |
C2 |
179.1 |
179.8 |
C4 |
N9 |
C8 |
N7 |
0.0 |
359.7 |
C4 |
N9 |
C8 |
H8 |
180.0 |
180.0 |
C8 |
N9 |
C4 |
HN9 |
180.0 |
180.1 |
C6 |
C5 |
C4 |
N3 |
360.0 |
360.0 |
C6 |
C5 |
C4 |
N9 |
180.3 |
180.2 |
C4 |
C5 |
C6 |
N7 |
179.4 |
180.0 |
C6 |
C5 |
N7 |
C8 |
179.7 |
179.6 |
N1 |
C6 |
C5 |
S6 |
181.4 |
180.1 |
C5 |
C6 |
N1 |
C2 |
359.6 |
359.9 |
C5 |
C6 |
N1 |
H5 |
179.6 |
180.0 |
N7 |
C5 |
C4 |
N3 |
179.6 |
180.0 |
N7 |
C5 |
C4 |
N9 |
359.8 |
0.2 |
C4 |
C5 |
N7 |
C6 |
180.5 |
180.0 |
N7 |
C5 |
C6 |
N1 |
181.0 |
180.1 |
N7 |
C5 |
C6 |
S6 |
359.6 |
359.9 |
N9 |
C8 |
N7 |
C5 |
359.9 |
0.4 |
C5 |
N7 |
C8 |
H8 |
179.9 |
180.1 |
N1 |
C6 |
C5 |
N7 |
181.0 |
180.1 |
C5 |
C6 |
N1 |
S6 |
178.6 |
179.9 |
C2 |
N1 |
C6 |
H5 |
180.0 |
179.9 |
C6 |
N1 |
C2 |
N2 |
180.1 |
180.1 |
C6 |
N1 |
C2 |
N3 |
359.9 |
0.1 |
S6 |
C6 |
C5 |
N7 |
359.6 |
359.9 |
C5 |
C6 |
S6 |
N1 |
181.4 |
180.1 |
S6 |
C6 |
N1 |
C2 |
181.0 |
180.0 |
S6 |
C6 |
N1 |
H5 |
0.9 |
0.1 |
C4 |
N9 |
C8 |
HN9 |
180.0 |
179.9 |
C5 |
N7 |
C8 |
N9 |
359.9 |
0.4 |
N7 |
C8 |
N9 |
H8 |
180.0 |
179.7 |
N9 |
C8 |
N7 |
H8 |
180.0 |
180.3 |
N7 |
C8 |
N9 |
HN9 |
180.0 |
179.8 |
N9 |
C8 |
H8 |
N7 |
180.0 |
179.7 |
H8 |
C8 |
N9 |
HN9 |
360.0 |
0.1 |
C4 |
N3 |
C2 |
N1 |
0.6 |
360.0 |
C2 |
N1 |
C6 |
S6 |
181.0 |
180.0 |
C6 |
N1 |
C2 |
H5 |
180.0 |
180.1 |
N1 |
C2 |
N2 |
HN2 |
180.0 |
0.0 |
N1 |
C2 |
N2 |
HN2A |
360.0 |
180.0 |
N2 |
C2 |
N1 |
N3 |
180.2 |
180.0 |
H5 |
N1 |
C6 |
S6 |
0.9 |
0.1 |
C6 |
N1 |
H5 |
C2 |
180.0 |
179.9 |
H5 |
N1 |
C2 |
N2 |
0.2 |
360.0 |
H5 |
N1 |
C2 |
N3 |
179.9 |
180.0 |
C4 |
N3 |
C2 |
N2 |
180.3 |
180.0 |
N2 |
C2 |
N1 |
H5 |
0.2 |
360.0 |
N1 |
C2 |
N2 |
N3 |
179.8 |
180.0 |
HN2 |
N2 |
C2 |
HN2A |
180.0 |
180.0 |
C2 |
N2 |
HN2 |
HN2A |
180.0 |
180.0 |
HN2 |
N2 |
C2 |
N3 |
0.3 |
180.0 |
C2 |
N2 |
HN2A |
HN2 |
180.0 |
180.0 |
HN2A |
N2 |
C2 |
N3 |
180.2 |
0.0 |
C2 |
N3 |
C4 |
N9 |
179.1 |
179.8 |
N3 |
C2 |
N1 |
H5 |
179.9 |
180.0 |
N1 |
C2 |
N3 |
N2 |
180.2 |
180.0 |
N3 |
C2 |
N2 |
HN2 |
0.3 |
180.0 |
N3 |
C2 |
N2 |
HN2A |
180.2 |
0.0 |
C4 |
N9 |
HN9 |
C8 |
180.0 |
180.1 |
HN9 |
N9 |
C8 |
N7 |
180.0 |
179.8 |
HN9 |
N9 |
C8 |
H8 |
360.0 |
0.1 |