PDB Chemical Component DX2
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DX2
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C4 |
N3 |
1.346 |
1.325 |
| C4 |
C4A |
1.404 |
1.419 |
| C4 |
N4 |
1.324 |
1.378 |
| C6 |
C7 |
1.432 |
1.414 |
| C6 |
CAN |
1.405 |
1.482 |
| C6 |
N5 |
1.340 |
1.322 |
| C7 |
N8 |
1.352 |
1.321 |
| C7 |
NAB |
1.335 |
1.383 |
| N1 |
C2 |
1.353 |
1.321 |
| N1 |
C8A |
1.353 |
1.340 |
| N2 |
C2 |
1.318 |
1.382 |
| N3 |
C2 |
1.344 |
1.329 |
| CAG |
CAE |
1.403 |
1.380 |
| CAG |
CAN |
1.408 |
1.394 |
| CAE |
CAD |
1.393 |
1.383 |
| CAD |
CAF |
1.402 |
1.383 |
| CAF |
CAH |
1.406 |
1.380 |
| CAH |
CAN |
1.392 |
1.395 |
| N5 |
C4A |
1.345 |
1.331 |
| C4A |
C8A |
1.396 |
1.417 |
| C8A |
N8 |
1.342 |
1.336 |
| N2 |
HN2 |
1.000 |
0.970 |
| N2 |
HN2A |
0.999 |
0.970 |
| CAG |
HAG |
1.081 |
1.079 |
| CAE |
HAE |
1.080 |
1.080 |
| CAD |
HAD |
1.080 |
1.080 |
| CAF |
HAF |
1.080 |
1.080 |
| CAH |
HAH |
1.080 |
1.080 |
| N4 |
HN4 |
1.000 |
0.970 |
| N4 |
HN4A |
0.999 |
0.970 |
| NAB |
HNAB |
1.000 |
0.970 |
| NAB |
HNAA |
1.000 |
0.969 |
Bond Angles for DX2
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C4 |
C4A |
119.8 |
118.4 |
| N3 |
C4 |
N4 |
120.3 |
120.8 |
| C4 |
N3 |
C2 |
120.7 |
121.4 |
| C4A |
C4 |
N4 |
119.9 |
120.8 |
| C4 |
C4A |
N5 |
120.7 |
121.6 |
| C4 |
C4A |
C8A |
118.5 |
118.2 |
| C4 |
N4 |
HN4 |
109.5 |
120.0 |
| C4 |
N4 |
HN4A |
109.5 |
120.1 |
| C7 |
C6 |
CAN |
126.7 |
119.8 |
| C7 |
C6 |
N5 |
118.0 |
120.3 |
| C6 |
C7 |
N8 |
120.4 |
120.4 |
| C6 |
C7 |
NAB |
123.7 |
119.8 |
| CAN |
C6 |
N5 |
115.3 |
119.8 |
| C6 |
CAN |
CAG |
118.5 |
120.1 |
| C6 |
CAN |
CAH |
123.2 |
120.1 |
| C6 |
N5 |
C4A |
121.2 |
119.7 |
| N8 |
C7 |
NAB |
116.0 |
119.8 |
| C7 |
N8 |
C8A |
120.3 |
119.7 |
| C7 |
NAB |
HNAB |
109.5 |
120.0 |
| C7 |
NAB |
HNAA |
109.5 |
120.0 |
| C2 |
N1 |
C8A |
120.8 |
120.5 |
| N1 |
C2 |
N2 |
120.3 |
118.6 |
| N1 |
C2 |
N3 |
121.0 |
122.7 |
| N1 |
C8A |
C4A |
119.2 |
118.8 |
| N1 |
C8A |
N8 |
121.4 |
121.4 |
| N2 |
C2 |
N3 |
118.8 |
118.7 |
| C2 |
N2 |
HN2 |
109.5 |
120.1 |
| C2 |
N2 |
HN2A |
109.5 |
120.0 |
| CAE |
CAG |
CAN |
122.5 |
119.9 |
| CAG |
CAE |
CAD |
119.0 |
120.1 |
| CAE |
CAG |
HAG |
118.7 |
120.1 |
| CAG |
CAE |
HAE |
120.5 |
119.9 |
| CAG |
CAN |
CAH |
118.2 |
119.8 |
| CAN |
CAG |
HAG |
118.8 |
120.1 |
| CAE |
CAD |
CAF |
118.9 |
120.3 |
| CAD |
CAE |
HAE |
120.5 |
120.0 |
| CAE |
CAD |
HAD |
120.5 |
119.8 |
| CAD |
CAF |
CAH |
121.9 |
120.2 |
| CAF |
CAD |
HAD |
120.5 |
119.9 |
| CAD |
CAF |
HAF |
119.0 |
119.9 |
| CAF |
CAH |
CAN |
119.6 |
119.8 |
| CAH |
CAF |
HAF |
119.1 |
119.9 |
| CAF |
CAH |
HAH |
120.2 |
120.1 |
| CAN |
CAH |
HAH |
120.2 |
120.1 |
| N5 |
C4A |
C8A |
120.8 |
120.2 |
| C4A |
C8A |
N8 |
119.4 |
119.8 |
| HN2 |
N2 |
HN2A |
109.5 |
120.0 |
| HN4 |
N4 |
HN4A |
109.5 |
119.9 |
| HNAB |
NAB |
HNAA |
109.5 |
120.0 |
Torsion Angles for DX2
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4A |
C4 |
N3 |
N4 |
181.2 |
180.2 |
| N3 |
C4 |
C4A |
N5 |
178.6 |
180.0 |
| N3 |
C4 |
C4A |
C8A |
358.7 |
0.0 |
| N3 |
C4 |
N4 |
HN4 |
292.0 |
360.0 |
| N3 |
C4 |
N4 |
HN4A |
52.0 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
359.2 |
0.0 |
| N2 |
C2 |
N3 |
C4 |
178.9 |
180.0 |
| N3 |
C4 |
C4A |
N4 |
178.8 |
179.8 |
| C4A |
C4 |
N3 |
C2 |
1.2 |
359.9 |
| C4A |
C4 |
N4 |
HN4 |
110.8 |
179.7 |
| C4A |
C4 |
N4 |
HN4A |
230.8 |
359.7 |
| C6 |
N5 |
C4A |
C4 |
179.1 |
180.0 |
| N1 |
C8A |
C4A |
C4 |
1.0 |
0.0 |
| N5 |
C4A |
C4 |
C8A |
179.8 |
180.0 |
| C4 |
C4A |
C8A |
N8 |
179.8 |
180.0 |
| N3 |
C4 |
N4 |
C4A |
181.2 |
180.2 |
| N4 |
C4 |
N3 |
C2 |
180.0 |
179.7 |
| N4 |
C4 |
C4A |
N5 |
359.8 |
0.3 |
| N4 |
C4 |
C4A |
C8A |
179.9 |
180.3 |
| HN4 |
N4 |
C4 |
HN4A |
240.0 |
180.0 |
| CAN |
C6 |
C7 |
N5 |
183.8 |
180.0 |
| C7 |
C6 |
CAN |
CAG |
58.9 |
43.9 |
| C7 |
C6 |
CAN |
CAH |
234.0 |
223.9 |
| C7 |
C6 |
N5 |
C4A |
1.9 |
359.9 |
| N8 |
C7 |
C6 |
NAB |
178.8 |
180.0 |
| C6 |
C7 |
N8 |
C8A |
0.9 |
360.0 |
| C6 |
C7 |
NAB |
HNAB |
283.5 |
8.7 |
| C6 |
C7 |
NAB |
HNAA |
43.6 |
188.7 |
| C7 |
C6 |
CAN |
N5 |
176.3 |
180.0 |
| CAN |
C6 |
C7 |
N8 |
181.9 |
180.0 |
| CAN |
C6 |
C7 |
NAB |
3.1 |
360.0 |
| CAN |
C6 |
N5 |
C4A |
178.6 |
180.0 |
| CAE |
CAG |
CAN |
C6 |
178.2 |
180.0 |
| CAG |
CAN |
C6 |
CAH |
184.9 |
180.0 |
| C6 |
CAN |
CAG |
HAG |
358.2 |
0.2 |
| CAF |
CAH |
CAN |
C6 |
181.8 |
180.0 |
| C6 |
CAN |
CAH |
HAH |
1.8 |
0.1 |
| C4 |
C4A |
N5 |
C6 |
179.1 |
180.0 |
| C7 |
C6 |
N5 |
CAN |
183.3 |
180.0 |
| N5 |
C6 |
C7 |
N8 |
358.2 |
0.0 |
| N5 |
C6 |
C7 |
NAB |
179.3 |
180.0 |
| N5 |
C6 |
CAN |
CAG |
242.6 |
223.9 |
| N5 |
C6 |
CAN |
CAH |
57.7 |
43.9 |
| C6 |
N5 |
C4A |
C8A |
359.0 |
0.0 |
| N8 |
C7 |
C6 |
CAN |
181.9 |
180.0 |
| N8 |
C7 |
C6 |
N5 |
358.2 |
0.0 |
| C6 |
C7 |
N8 |
NAB |
181.1 |
180.0 |
| N8 |
C7 |
NAB |
HNAB |
104.7 |
188.7 |
| N8 |
C7 |
NAB |
HNAA |
224.7 |
8.7 |
| N1 |
C8A |
N8 |
C7 |
178.9 |
180.0 |
| C4A |
C8A |
N8 |
C7 |
0.1 |
0.0 |
| NAB |
C7 |
C6 |
CAN |
3.1 |
360.0 |
| NAB |
C7 |
C6 |
N5 |
179.3 |
180.0 |
| C6 |
C7 |
NAB |
N8 |
178.9 |
180.0 |
| NAB |
C7 |
N8 |
C8A |
179.8 |
180.0 |
| HNAB |
NAB |
C7 |
HNAA |
239.9 |
180.1 |
| C4 |
N3 |
C2 |
N1 |
359.2 |
0.0 |
| C2 |
N1 |
C8A |
C4A |
359.4 |
360.0 |
| C2 |
N1 |
C8A |
N8 |
180.5 |
180.0 |
| N2 |
C2 |
N1 |
N3 |
180.2 |
180.0 |
| N1 |
C2 |
N2 |
HN2 |
61.3 |
0.1 |
| N1 |
C2 |
N2 |
HN2A |
181.3 |
180.0 |
| C4 |
C4A |
C8A |
N1 |
1.0 |
0.0 |
| C7 |
N8 |
C8A |
N1 |
178.9 |
180.0 |
| C8A |
N1 |
C2 |
N2 |
180.8 |
180.0 |
| C8A |
N1 |
C2 |
N3 |
0.6 |
0.0 |
| N5 |
C4A |
C8A |
N1 |
181.1 |
180.0 |
| C4A |
C8A |
N1 |
N8 |
178.8 |
180.0 |
| C4 |
N3 |
C2 |
N2 |
178.9 |
180.0 |
| N2 |
C2 |
N1 |
C8A |
180.8 |
180.0 |
| N1 |
C2 |
N2 |
N3 |
179.8 |
180.0 |
| HN2 |
N2 |
C2 |
HN2A |
239.9 |
180.1 |
| C2 |
N3 |
C4 |
C4A |
1.2 |
359.9 |
| C2 |
N3 |
C4 |
N4 |
180.0 |
179.7 |
| N3 |
C2 |
N1 |
C8A |
0.6 |
0.0 |
| N1 |
C2 |
N3 |
N2 |
180.2 |
180.0 |
| N3 |
C2 |
N2 |
HN2 |
241.5 |
180.1 |
| N3 |
C2 |
N2 |
HN2A |
1.6 |
0.0 |
| C6 |
CAN |
CAG |
CAE |
178.2 |
180.0 |
| CAE |
CAG |
CAN |
CAH |
2.9 |
0.0 |
| CAN |
CAG |
CAE |
HAG |
180.0 |
180.2 |
| CAG |
CAE |
CAD |
CAF |
359.9 |
0.0 |
| CAD |
CAE |
CAG |
HAE |
180.0 |
180.0 |
| CAG |
CAE |
CAD |
HAD |
179.9 |
180.0 |
| CAG |
CAN |
C6 |
N5 |
242.6 |
223.9 |
| C6 |
CAN |
CAG |
CAH |
175.3 |
180.0 |
| CAN |
CAG |
CAE |
CAD |
358.7 |
0.0 |
| CAE |
CAG |
CAN |
HAG |
180.0 |
179.8 |
| CAN |
CAG |
CAE |
HAE |
178.7 |
180.0 |
| CAF |
CAH |
CAN |
CAG |
356.9 |
360.0 |
| CAG |
CAN |
CAH |
HAH |
176.9 |
180.1 |
| CAD |
CAE |
CAG |
CAN |
358.7 |
0.0 |
| CAD |
CAE |
CAG |
HAG |
178.7 |
179.8 |
| CAG |
CAE |
CAD |
HAE |
180.0 |
180.0 |
| CAE |
CAD |
CAF |
CAH |
359.8 |
359.9 |
| CAF |
CAD |
CAE |
HAD |
180.0 |
180.0 |
| CAE |
CAD |
CAF |
HAF |
179.8 |
180.0 |
| CAF |
CAD |
CAE |
HAE |
179.9 |
180.0 |
| CAE |
CAD |
CAF |
HAD |
180.0 |
180.0 |
| CAD |
CAF |
CAH |
CAN |
1.8 |
0.1 |
| CAH |
CAF |
CAD |
HAF |
180.0 |
179.9 |
| CAD |
CAF |
CAH |
HAH |
181.8 |
179.9 |
| C6 |
CAN |
CAH |
CAF |
181.8 |
180.0 |
| CAG |
CAN |
CAH |
CAF |
356.9 |
360.0 |
| CAH |
CAF |
CAD |
HAD |
179.8 |
180.0 |
| CAD |
CAF |
CAH |
HAF |
180.0 |
180.1 |
| CAN |
CAH |
CAF |
HAH |
180.0 |
180.1 |
| CAH |
CAN |
C6 |
N5 |
57.7 |
43.9 |
| C6 |
CAN |
CAH |
CAG |
184.9 |
180.0 |
| CAH |
CAN |
CAG |
HAG |
182.9 |
180.2 |
| CAN |
CAH |
CAF |
HAF |
181.8 |
180.0 |
| CAF |
CAH |
CAN |
HAH |
180.0 |
179.9 |
| N5 |
C4A |
C4 |
N4 |
359.8 |
0.3 |
| C4 |
C4A |
N5 |
C8A |
180.2 |
180.0 |
| N1 |
C8A |
C4A |
N5 |
181.1 |
180.0 |
| N5 |
C4A |
C8A |
N8 |
360.0 |
360.0 |
| C8A |
C4A |
C4 |
N4 |
179.9 |
180.3 |
| C4 |
C4A |
C8A |
N5 |
179.8 |
180.0 |
| C7 |
N8 |
C8A |
C4A |
0.1 |
0.0 |
| N1 |
C8A |
C4A |
N8 |
181.2 |
180.0 |
| C8A |
N8 |
C7 |
NAB |
179.8 |
180.0 |
| N1 |
C8A |
N8 |
C4A |
178.8 |
180.0 |
| HN2 |
N2 |
C2 |
N3 |
241.5 |
180.1 |
| C2 |
N2 |
HN2 |
HN2A |
120.0 |
179.9 |
| HN2A |
N2 |
C2 |
N3 |
1.6 |
0.0 |
| C2 |
N2 |
HN2A |
HN2 |
239.9 |
180.1 |
| CAE |
CAG |
HAG |
CAN |
180.0 |
180.2 |
| HAG |
CAG |
CAE |
CAD |
178.7 |
179.8 |
| HAG |
CAG |
CAE |
HAE |
358.7 |
359.8 |
| HAG |
CAG |
CAN |
CAH |
182.9 |
180.2 |
| HAE |
CAE |
CAG |
CAN |
178.7 |
180.0 |
| CAG |
CAE |
HAE |
CAD |
180.0 |
180.0 |
| HAE |
CAE |
CAG |
HAG |
358.7 |
359.8 |
| HAE |
CAE |
CAD |
CAF |
179.9 |
180.0 |
| HAE |
CAE |
CAD |
HAD |
359.9 |
0.0 |
| CAE |
CAD |
HAD |
CAF |
180.0 |
180.0 |
| HAD |
CAD |
CAE |
HAE |
359.9 |
0.0 |
| HAD |
CAD |
CAF |
CAH |
179.8 |
180.0 |
| HAD |
CAD |
CAF |
HAF |
359.8 |
0.0 |
| CAD |
CAF |
HAF |
CAH |
180.0 |
179.9 |
| HAF |
CAF |
CAD |
HAD |
359.8 |
0.0 |
| HAF |
CAF |
CAH |
CAN |
181.8 |
180.0 |
| HAF |
CAF |
CAH |
HAH |
1.8 |
359.9 |
| CAF |
CAH |
HAH |
CAN |
180.0 |
180.1 |
| HAH |
CAH |
CAF |
HAF |
1.8 |
359.9 |
| C4 |
N4 |
HN4 |
HN4A |
120.0 |
180.0 |
| C4 |
N4 |
HN4A |
HN4 |
240.0 |
180.0 |
| C7 |
NAB |
HNAB |
HNAA |
120.0 |
179.9 |
| C7 |
NAB |
HNAA |
HNAB |
240.0 |
180.1 |