PDB Chemical Component DWZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DWZ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CBE |
HBE |
1.100 |
1.090 |
| CBE |
HBEA |
1.100 |
1.090 |
| CBE |
HBEB |
1.100 |
1.090 |
| NBC |
CBE |
1.476 |
1.464 |
| CBD |
NBC |
1.333 |
1.466 |
| CBD |
HBD |
1.100 |
1.090 |
| CBD |
HBDA |
1.100 |
1.090 |
| CBD |
HBDB |
1.100 |
1.091 |
| C |
NBC |
1.363 |
1.348 |
| C |
CA |
1.572 |
1.507 |
| O |
C |
1.235 |
1.214 |
| CA |
N |
1.478 |
1.474 |
| CA |
HA |
1.100 |
1.090 |
| CB |
CA |
1.553 |
1.543 |
| CB |
CG |
1.527 |
1.551 |
| CB |
HB |
1.100 |
1.090 |
| CB |
HBA |
1.100 |
1.090 |
| N |
HN |
1.000 |
1.009 |
| CD |
N |
1.466 |
1.479 |
| CD |
HD |
1.100 |
1.090 |
| CD |
HDA |
1.100 |
1.090 |
| CG |
CD |
1.527 |
1.549 |
| CG |
HG |
1.100 |
1.091 |
| SAK |
CG |
1.847 |
1.814 |
| SAK |
CAI |
1.847 |
1.814 |
| CAI |
HAI |
1.100 |
1.090 |
| CAH |
CAI |
1.531 |
1.549 |
| CAH |
CAS |
1.542 |
1.529 |
| CAH |
HAH |
1.100 |
1.090 |
| CAS |
HAS |
1.100 |
1.090 |
| CAS |
HASA |
1.100 |
1.090 |
| CAS |
HASB |
1.100 |
1.090 |
| CAL |
CAI |
1.519 |
1.513 |
| CAL |
CAM |
1.510 |
1.482 |
| CAM |
OAU |
1.236 |
1.346 |
| OAT |
CAM |
1.234 |
1.214 |
| OAU |
HOAU |
0.950 |
0.967 |
| NAJ |
CAL |
1.316 |
1.273 |
| NAJ |
CAD |
1.466 |
1.473 |
| CAD |
CAH |
1.564 |
1.547 |
| CAD |
CAB |
1.546 |
1.531 |
| CAD |
HAD |
1.100 |
1.090 |
| CAB |
HAB |
1.100 |
1.090 |
| CAE |
CAB |
1.545 |
1.530 |
| CAE |
CAF |
1.532 |
1.530 |
| CAE |
HAE |
1.101 |
1.090 |
| CAF |
HAF |
1.100 |
1.090 |
| CAF |
HAFA |
1.100 |
1.090 |
| CAF |
HAFB |
1.101 |
1.091 |
| OAG |
CAE |
1.460 |
1.429 |
| OAG |
HOAG |
0.950 |
0.968 |
| CAA |
CAB |
1.548 |
1.507 |
| CAA |
OAC |
1.241 |
1.208 |
| CAA |
HAA |
1.080 |
1.080 |
Bond Angles for DWZ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HBE |
CBE |
HBEA |
109.5 |
109.5 |
| HBE |
CBE |
HBEB |
109.5 |
109.4 |
| NBC |
CBE |
HBE |
109.5 |
109.5 |
| HBEA |
CBE |
HBEB |
109.5 |
109.5 |
| NBC |
CBE |
HBEA |
109.5 |
109.5 |
| NBC |
CBE |
HBEB |
109.4 |
109.4 |
| HBD |
CBD |
HBDA |
109.5 |
109.5 |
| HBD |
CBD |
HBDB |
109.4 |
109.4 |
| HBDA |
CBD |
HBDB |
109.5 |
109.5 |
| O |
C |
CA |
117.3 |
120.0 |
| C |
CA |
N |
114.3 |
109.9 |
| C |
CA |
HA |
108.3 |
109.9 |
| N |
CA |
HA |
109.5 |
109.9 |
| CB |
CA |
N |
105.6 |
107.2 |
| CA |
N |
HN |
110.8 |
111.0 |
| CB |
CA |
HA |
108.5 |
110.0 |
| CG |
CB |
HB |
110.7 |
110.7 |
| CG |
CB |
HBA |
110.7 |
110.7 |
| CB |
CG |
CD |
101.3 |
101.7 |
| CB |
CG |
HG |
111.8 |
111.0 |
| HB |
CB |
HBA |
109.4 |
110.8 |
| CD |
N |
HN |
110.7 |
111.0 |
| HD |
CD |
HDA |
109.5 |
110.3 |
| CG |
CD |
HD |
111.2 |
110.5 |
| CG |
CD |
HDA |
111.3 |
110.5 |
| SAK |
CG |
HG |
107.9 |
110.9 |
| SAK |
CAI |
HAI |
110.4 |
110.5 |
| CAH |
CAI |
HAI |
114.9 |
110.5 |
| CAL |
CAI |
HAI |
115.1 |
110.6 |
| CAS |
CAH |
HAH |
109.1 |
111.0 |
| CAH |
CAS |
HAS |
109.5 |
109.5 |
| CAH |
CAS |
HASA |
109.4 |
109.5 |
| CAH |
CAS |
HASB |
109.4 |
109.5 |
| CAD |
CAH |
HAH |
108.8 |
111.2 |
| HAS |
CAS |
HASA |
109.5 |
109.5 |
| HAS |
CAS |
HASB |
109.5 |
109.4 |
| HASA |
CAS |
HASB |
109.5 |
109.4 |
| CAL |
CAM |
OAU |
118.8 |
120.0 |
| OAT |
CAM |
OAU |
124.9 |
120.0 |
| CAM |
OAU |
HOAU |
109.5 |
117.1 |
| NAJ |
CAD |
CAB |
103.7 |
110.3 |
| NAJ |
CAD |
HAD |
113.0 |
110.4 |
| CAB |
CAD |
HAD |
111.8 |
110.4 |
| CAD |
CAB |
HAB |
107.6 |
109.5 |
| CAE |
CAB |
HAB |
107.6 |
109.5 |
| CAA |
CAB |
HAB |
107.5 |
109.5 |
| CAF |
CAE |
HAE |
106.9 |
109.5 |
| CAE |
CAF |
HAF |
109.5 |
109.5 |
| CAE |
CAF |
HAFA |
109.5 |
109.5 |
| CAE |
CAF |
HAFB |
109.5 |
109.5 |
| OAG |
CAE |
HAE |
107.8 |
109.5 |
| HAF |
CAF |
HAFA |
109.4 |
109.5 |
| HAF |
CAF |
HAFB |
109.5 |
109.5 |
| HAFA |
CAF |
HAFB |
109.5 |
109.4 |
| OAC |
CAA |
HAA |
119.3 |
120.0 |
Torsion Angles for DWZ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HBEA |
CBE |
HBE |
HBEB |
120.0 |
120.1 |
| NBC |
CBE |
HBE |
HBEA |
120.0 |
120.0 |
| NBC |
CBE |
HBE |
HBEB |
240.0 |
240.1 |
| HBE |
CBE |
HBEA |
HBEB |
240.0 |
240.0 |
| NBC |
CBE |
HBEA |
HBE |
240.0 |
240.0 |
| NBC |
CBE |
HBEA |
HBEB |
120.0 |
120.0 |
| HBE |
CBE |
HBEB |
HBEA |
120.0 |
120.1 |
| NBC |
CBE |
HBEB |
HBE |
120.0 |
120.0 |
| NBC |
CBE |
HBEB |
HBEA |
240.0 |
240.0 |
| HBE |
CBE |
NBC |
HBEA |
240.0 |
240.0 |
| HBE |
CBE |
NBC |
HBEB |
120.0 |
119.9 |
| HBEA |
CBE |
NBC |
HBEB |
240.0 |
240.0 |
| CBD |
NBC |
CBE |
HBE |
180.0 |
90.0 |
| CBD |
NBC |
CBE |
HBEA |
300.0 |
210.0 |
| CBD |
NBC |
CBE |
HBEB |
60.0 |
330.0 |
| HBDA |
CBD |
HBD |
HBDB |
120.0 |
120.0 |
| HBD |
CBD |
HBDA |
HBDB |
240.0 |
240.0 |
| HBD |
CBD |
HBDB |
HBDA |
120.0 |
120.0 |
| C |
NBC |
CBE |
HBE |
0.2 |
269.9 |
| C |
NBC |
CBE |
HBEA |
120.2 |
30.0 |
| C |
NBC |
CBE |
HBEB |
240.2 |
150.0 |
| N |
CA |
C |
HA |
122.3 |
121.0 |
| CB |
CA |
C |
N |
119.0 |
117.8 |
| C |
CA |
N |
HN |
268.5 |
240.7 |
| CB |
CA |
C |
HA |
241.3 |
238.8 |
| O |
C |
CA |
N |
179.0 |
341.4 |
| O |
C |
CA |
HA |
56.7 |
220.4 |
| C |
CA |
N |
HA |
238.4 |
239.0 |
| CB |
CA |
N |
HA |
116.6 |
119.6 |
| CD |
N |
CA |
HN |
240.8 |
237.8 |
| C |
CA |
HA |
N |
125.2 |
121.0 |
| CB |
CA |
HA |
N |
245.3 |
242.1 |
| HA |
CA |
N |
HN |
30.1 |
1.7 |
| C |
CA |
CB |
N |
235.8 |
240.6 |
| C |
CA |
CB |
HA |
118.6 |
121.1 |
| N |
CA |
CB |
HA |
242.7 |
240.5 |
| CB |
CA |
N |
HN |
146.7 |
121.3 |
| CG |
CB |
CA |
N |
0.9 |
337.7 |
| CG |
CB |
CA |
HA |
118.2 |
97.2 |
| HB |
CB |
CG |
HBA |
121.6 |
123.2 |
| CB |
CG |
CD |
HD |
286.3 |
204.1 |
| CB |
CG |
CD |
HDA |
163.9 |
81.8 |
| SAK |
CG |
CB |
HG |
239.9 |
236.2 |
| HB |
CB |
CA |
N |
120.1 |
96.1 |
| HB |
CB |
CA |
HA |
237.4 |
215.6 |
| CG |
CB |
HB |
HBA |
237.7 |
236.8 |
| HB |
CB |
CG |
CD |
213.3 |
277.2 |
| HB |
CB |
CG |
HG |
94.0 |
159.2 |
| HBA |
CB |
CA |
N |
241.8 |
219.3 |
| HBA |
CB |
CA |
HA |
359.0 |
338.8 |
| CG |
CB |
HBA |
HB |
122.4 |
123.2 |
| HBA |
CB |
CG |
CD |
91.7 |
154.0 |
| HBA |
CB |
CG |
HG |
332.4 |
36.0 |
| HN |
N |
CA |
HA |
30.1 |
1.7 |
| CD |
N |
CA |
HA |
271.0 |
239.5 |
| CA |
N |
CD |
HN |
119.2 |
122.2 |
| CB |
CG |
CD |
N |
45.1 |
323.0 |
| HD |
CD |
N |
HN |
314.0 |
20.7 |
| CG |
CD |
HD |
HDA |
236.6 |
237.6 |
| HDA |
CD |
N |
HN |
76.4 |
142.9 |
| CG |
CD |
HDA |
HD |
123.4 |
122.4 |
| CD |
CG |
CB |
HB |
213.3 |
277.2 |
| CD |
CG |
CB |
HBA |
91.7 |
154.0 |
| CB |
CG |
CD |
HG |
240.7 |
241.9 |
| CG |
CD |
N |
HN |
195.2 |
261.8 |
| HD |
CD |
CG |
HDA |
122.4 |
122.4 |
| HG |
CG |
CB |
HB |
94.0 |
159.2 |
| HG |
CG |
CB |
HBA |
332.4 |
36.0 |
| CB |
CG |
HG |
CD |
112.8 |
112.3 |
| HG |
CG |
CD |
HD |
45.6 |
322.2 |
| HG |
CG |
CD |
HDA |
283.2 |
199.8 |
| SAK |
CG |
CB |
HB |
334.0 |
35.4 |
| SAK |
CG |
CB |
HBA |
212.4 |
272.1 |
| CB |
CG |
SAK |
HG |
122.4 |
123.9 |
| SAK |
CG |
CD |
HD |
168.0 |
86.0 |
| SAK |
CG |
CD |
HDA |
45.7 |
323.6 |
| CAI |
SAK |
CG |
HG |
72.1 |
51.1 |
| CAH |
CAI |
SAK |
HAI |
125.1 |
122.7 |
| CAL |
CAI |
SAK |
HAI |
233.2 |
237.2 |
| SAK |
CAI |
CAH |
HAI |
237.7 |
237.3 |
| CAL |
CAI |
CAH |
HAI |
124.8 |
118.7 |
| CAS |
CAH |
CAI |
HAI |
334.0 |
335.6 |
| CAD |
CAH |
CAS |
HAH |
237.4 |
235.7 |
| HAS |
CAS |
CAH |
HASA |
240.0 |
240.0 |
| HAS |
CAS |
CAH |
HASB |
120.0 |
120.0 |
| HASA |
CAS |
CAH |
HASB |
240.0 |
240.0 |
| HAH |
CAH |
CAI |
HAI |
94.0 |
99.8 |
| HAH |
CAH |
CAS |
HAS |
59.9 |
302.9 |
| HAH |
CAH |
CAS |
HASA |
179.9 |
63.0 |
| HAH |
CAH |
CAS |
HASB |
299.9 |
182.9 |
| HAS |
CAS |
CAH |
HAH |
59.9 |
302.9 |
| CAH |
CAS |
HAS |
HASA |
120.0 |
120.0 |
| CAH |
CAS |
HAS |
HASB |
240.0 |
239.9 |
| HASA |
CAS |
HAS |
HASB |
120.0 |
119.9 |
| HASA |
CAS |
CAH |
HAH |
179.9 |
63.0 |
| CAH |
CAS |
HASA |
HAS |
240.0 |
240.0 |
| CAH |
CAS |
HASA |
HASB |
120.0 |
120.0 |
| HAS |
CAS |
HASA |
HASB |
240.0 |
240.1 |
| HASB |
CAS |
CAH |
HAH |
299.9 |
182.9 |
| CAH |
CAS |
HASB |
HAS |
120.0 |
120.1 |
| CAH |
CAS |
HASB |
HASA |
240.0 |
240.0 |
| HAS |
CAS |
HASB |
HASA |
120.0 |
119.9 |
| SAK |
CAI |
CAL |
HAI |
124.0 |
122.7 |
| CAH |
CAI |
CAL |
HAI |
235.4 |
241.4 |
| CAM |
CAL |
CAI |
HAI |
321.8 |
314.7 |
| OAT |
CAM |
CAL |
OAU |
180.9 |
180.0 |
| CAL |
CAM |
OAU |
HOAU |
181.0 |
179.9 |
| CAL |
CAM |
OAT |
OAU |
179.0 |
180.0 |
| OAT |
CAM |
OAU |
HOAU |
360.0 |
360.0 |
| NAJ |
CAL |
CAI |
HAI |
144.7 |
134.6 |
| NAJ |
CAD |
CAH |
HAH |
139.6 |
141.8 |
| CAB |
CAD |
NAJ |
HAD |
121.2 |
122.2 |
| NAJ |
CAD |
CAB |
HAB |
97.8 |
171.8 |
| CAD |
CAH |
CAI |
HAI |
210.0 |
217.7 |
| CAS |
CAH |
CAD |
HAH |
122.7 |
124.3 |
| CAD |
CAH |
CAS |
HAS |
297.3 |
178.6 |
| CAD |
CAH |
CAS |
HASA |
57.3 |
298.6 |
| CAD |
CAH |
CAS |
HASB |
177.3 |
58.6 |
| CAB |
CAD |
CAH |
HAH |
251.0 |
260.7 |
| NAJ |
CAD |
CAB |
HAD |
238.0 |
237.8 |
| CAE |
CAB |
CAD |
HAB |
118.9 |
120.0 |
| CAA |
CAB |
CAD |
HAB |
243.7 |
240.0 |
| HAD |
CAD |
CAH |
HAH |
17.6 |
22.9 |
| NAJ |
CAD |
HAD |
CAB |
116.5 |
122.2 |
| HAD |
CAD |
CAB |
HAB |
219.8 |
294.0 |
| HAB |
CAB |
CAD |
HAD |
219.8 |
294.0 |
| CAE |
CAB |
CAD |
HAD |
338.7 |
54.0 |
| CAD |
CAB |
CAE |
HAB |
241.1 |
240.0 |
| CAA |
CAB |
CAE |
HAB |
117.7 |
120.0 |
| CAF |
CAE |
CAB |
HAB |
52.1 |
60.0 |
| OAG |
CAE |
CAF |
HAE |
117.4 |
120.0 |
| HAF |
CAF |
CAE |
HAFA |
240.0 |
240.0 |
| HAF |
CAF |
CAE |
HAFB |
120.0 |
120.0 |
| HAFA |
CAF |
CAE |
HAFB |
240.0 |
240.0 |
| HAE |
CAE |
CAB |
HAB |
295.9 |
300.0 |
| HAE |
CAE |
CAF |
HAF |
296.1 |
60.0 |
| HAE |
CAE |
CAF |
HAFA |
56.0 |
180.0 |
| HAE |
CAE |
CAF |
HAFB |
176.0 |
300.0 |
| HAF |
CAF |
CAE |
HAE |
296.1 |
60.0 |
| CAE |
CAF |
HAF |
HAFA |
120.0 |
120.0 |
| CAE |
CAF |
HAF |
HAFB |
240.0 |
240.0 |
| HAFA |
CAF |
HAF |
HAFB |
120.0 |
120.0 |
| HAFA |
CAF |
CAE |
HAE |
56.0 |
180.0 |
| CAE |
CAF |
HAFA |
HAF |
240.0 |
240.0 |
| CAE |
CAF |
HAFA |
HAFB |
120.0 |
120.0 |
| HAF |
CAF |
HAFA |
HAFB |
240.0 |
240.0 |
| HAFB |
CAF |
CAE |
HAE |
176.0 |
300.0 |
| CAE |
CAF |
HAFB |
HAF |
120.0 |
120.0 |
| CAE |
CAF |
HAFB |
HAFA |
240.0 |
240.0 |
| HAF |
CAF |
HAFB |
HAFA |
120.0 |
120.0 |
| OAG |
CAE |
CAB |
HAB |
177.7 |
180.0 |
| CAF |
CAE |
OAG |
HAE |
243.1 |
240.0 |
| OAG |
CAE |
CAF |
HAF |
53.5 |
180.0 |
| OAG |
CAE |
CAF |
HAFA |
173.4 |
300.0 |
| OAG |
CAE |
CAF |
HAFB |
293.4 |
60.0 |
| HOAG |
OAG |
CAE |
HAE |
62.3 |
60.0 |
| CAA |
CAB |
CAD |
HAD |
103.5 |
174.0 |
| CAD |
CAB |
CAA |
HAB |
116.3 |
120.0 |
| CAE |
CAB |
CAA |
HAB |
242.3 |
240.0 |
| OAC |
CAA |
CAB |
HAB |
342.2 |
7.3 |
| HAA |
CAA |
CAB |
HAB |
162.1 |
187.3 |