PDB Chemical Component DW1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DW1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O11 |
C10 |
1.147 |
1.429 |
| RU |
C10 |
1.858 |
1.990 |
| C13 |
RU |
2.174 |
1.989 |
| RU |
N20 |
2.155 |
1.950 |
| RU |
N18 |
2.135 |
1.969 |
| C13 |
C12 |
1.407 |
1.512 |
| C12 |
C17 |
1.397 |
1.327 |
| C12 |
H12 |
1.080 |
1.080 |
| C13 |
C14 |
1.395 |
1.513 |
| C13 |
H13 |
1.100 |
1.090 |
| C14 |
C16 |
1.395 |
1.328 |
| C14 |
H14 |
1.080 |
1.079 |
| C17 |
C16 |
1.401 |
1.465 |
| C16 |
H16 |
1.080 |
1.079 |
| C17 |
H17 |
1.080 |
1.080 |
| C6 |
N20 |
1.358 |
1.314 |
| N20 |
C7 |
1.385 |
1.410 |
| C6 |
C5 |
1.410 |
1.383 |
| C6 |
H6 |
1.080 |
1.080 |
| C5 |
C4 |
1.413 |
1.395 |
| C5 |
H5 |
1.080 |
1.080 |
| C4 |
C3 |
1.404 |
1.393 |
| C4 |
H4 |
1.080 |
1.080 |
| N18 |
C22 |
1.294 |
1.208 |
| N18 |
C21 |
1.281 |
1.411 |
| C23 |
C22 |
1.402 |
1.388 |
| C22 |
C27 |
1.403 |
1.425 |
| C27 |
C26 |
1.400 |
1.389 |
| C27 |
C28 |
1.446 |
1.465 |
| C25 |
C26 |
1.413 |
1.391 |
| C26 |
H26 |
1.080 |
1.081 |
| C24 |
C25 |
1.412 |
1.386 |
| C25 |
O15 |
1.368 |
1.359 |
| C23 |
C24 |
1.408 |
1.386 |
| C24 |
H24 |
1.080 |
1.080 |
| C23 |
H23 |
1.080 |
1.080 |
| O15 |
HO15 |
0.950 |
0.967 |
| C21 |
C28 |
1.378 |
1.384 |
| C28 |
C29 |
1.407 |
1.399 |
| C21 |
C7 |
1.383 |
1.347 |
| C7 |
C3 |
1.409 |
1.436 |
| C3 |
C2 |
1.423 |
1.453 |
| C29 |
C2 |
1.416 |
1.433 |
| C29 |
C30 |
1.402 |
1.462 |
| C2 |
C1 |
1.402 |
1.412 |
| C30 |
O8 |
1.210 |
1.218 |
| C30 |
N19 |
1.363 |
1.346 |
| C1 |
N19 |
1.376 |
1.343 |
| N19 |
HN19 |
1.000 |
0.970 |
| C1 |
O9 |
1.206 |
1.219 |
Bond Angles for DW1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C13 |
RU |
N20 |
124.6 |
112.3 |
| C13 |
RU |
N18 |
158.6 |
112.4 |
| N20 |
RU |
N18 |
76.6 |
94.5 |
| RU |
N20 |
C7 |
112.6 |
98.4 |
| RU |
N18 |
C22 |
137.1 |
116.5 |
| RU |
N18 |
C21 |
113.5 |
94.6 |
| C13 |
C12 |
C17 |
107.6 |
106.8 |
| C13 |
C12 |
H12 |
126.2 |
126.6 |
| C17 |
C12 |
H12 |
126.2 |
126.6 |
| C12 |
C17 |
C16 |
107.8 |
110.6 |
| C12 |
C17 |
H17 |
126.1 |
124.7 |
| C14 |
C13 |
H13 |
125.4 |
110.4 |
| C13 |
C14 |
C16 |
107.7 |
106.8 |
| C13 |
C14 |
H14 |
126.1 |
126.6 |
| C16 |
C14 |
H14 |
126.2 |
126.6 |
| C14 |
C16 |
H16 |
125.7 |
124.7 |
| C17 |
C16 |
H16 |
125.7 |
124.7 |
| C6 |
N20 |
C7 |
118.4 |
122.4 |
| N20 |
C7 |
C21 |
115.1 |
120.3 |
| N20 |
C7 |
C3 |
125.1 |
121.0 |
| C5 |
C6 |
H6 |
120.4 |
121.4 |
| C6 |
C5 |
C4 |
122.5 |
123.0 |
| C6 |
C5 |
H5 |
118.8 |
118.4 |
| C4 |
C5 |
H5 |
118.8 |
118.5 |
| C5 |
C4 |
C3 |
118.5 |
121.0 |
| C5 |
C4 |
H4 |
120.7 |
119.5 |
| C3 |
C4 |
H4 |
120.7 |
119.5 |
| C4 |
C3 |
C7 |
116.3 |
114.4 |
| C4 |
C3 |
C2 |
127.0 |
128.6 |
| C22 |
N18 |
C21 |
109.4 |
108.2 |
| N18 |
C22 |
C27 |
110.3 |
109.7 |
| N18 |
C21 |
C28 |
113.1 |
109.7 |
| N18 |
C21 |
C7 |
122.2 |
125.0 |
| C22 |
C27 |
C26 |
121.8 |
121.8 |
| C22 |
C27 |
C28 |
104.4 |
106.5 |
| C26 |
C27 |
C28 |
133.8 |
131.4 |
| C27 |
C26 |
H26 |
120.4 |
121.4 |
| C27 |
C28 |
C29 |
140.0 |
142.6 |
| C25 |
C26 |
H26 |
120.4 |
121.4 |
| C24 |
C25 |
O15 |
118.3 |
119.4 |
| C25 |
O15 |
HO15 |
109.5 |
114.0 |
| C23 |
C24 |
H24 |
119.3 |
118.9 |
| C21 |
C28 |
C29 |
117.1 |
116.7 |
| C28 |
C29 |
C2 |
119.7 |
119.9 |
| C28 |
C29 |
C30 |
133.0 |
134.7 |
| C21 |
C7 |
C3 |
119.7 |
118.6 |
| C7 |
C3 |
C2 |
116.8 |
117.0 |
| C3 |
C2 |
C29 |
122.0 |
119.6 |
| C3 |
C2 |
C1 |
132.6 |
134.3 |
| C2 |
C29 |
C30 |
107.3 |
105.4 |
| C29 |
C2 |
C1 |
105.4 |
106.1 |
| C29 |
C30 |
O8 |
127.8 |
126.1 |
| C29 |
C30 |
N19 |
109.6 |
107.8 |
| C2 |
C1 |
N19 |
110.4 |
110.0 |
| C2 |
C1 |
O9 |
127.2 |
125.0 |
| O8 |
C30 |
N19 |
122.5 |
126.1 |
| C30 |
N19 |
HN19 |
126.4 |
124.6 |
| C1 |
N19 |
HN19 |
126.4 |
124.6 |
Torsion Angles for DW1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N20 |
RU |
C13 |
N18 |
189.0 |
254.9 |
| C13 |
RU |
N20 |
C7 |
176.1 |
96.5 |
| C13 |
RU |
N18 |
C22 |
6.5 |
19.9 |
| C13 |
RU |
N18 |
C21 |
188.6 |
266.9 |
| C13 |
RU |
N20 |
N18 |
176.6 |
116.5 |
| N20 |
RU |
N18 |
C22 |
178.9 |
136.3 |
| N20 |
RU |
N18 |
C21 |
1.0 |
23.3 |
| C6 |
N20 |
RU |
C7 |
180.4 |
181.6 |
| RU |
N20 |
C7 |
C21 |
0.1 |
11.0 |
| RU |
N20 |
C7 |
C3 |
179.8 |
193.1 |
| C13 |
RU |
N18 |
N20 |
187.6 |
243.6 |
| N18 |
RU |
N20 |
C7 |
359.4 |
340.0 |
| C22 |
N18 |
RU |
C21 |
177.9 |
113.0 |
| RU |
N18 |
C22 |
C27 |
181.0 |
232.5 |
| RU |
N18 |
C21 |
C28 |
179.8 |
143.2 |
| RU |
N18 |
C21 |
C7 |
358.6 |
335.9 |
| C12 |
C13 |
RU |
N20 |
207.6 |
67.4 |
| C12 |
C13 |
RU |
N18 |
18.6 |
172.5 |
| C17 |
C12 |
C13 |
H12 |
180.0 |
180.2 |
| C13 |
C12 |
C17 |
C16 |
359.6 |
0.0 |
| C13 |
C12 |
C17 |
H17 |
179.6 |
179.8 |
| C13 |
C12 |
C17 |
H12 |
180.0 |
179.8 |
| C12 |
C17 |
C16 |
H16 |
180.0 |
180.0 |
| C13 |
C12 |
H12 |
C17 |
180.0 |
180.2 |
| H12 |
C12 |
C17 |
C16 |
179.6 |
180.2 |
| H12 |
C12 |
C17 |
H17 |
359.6 |
360.0 |
| C14 |
C13 |
RU |
N20 |
324.4 |
183.1 |
| C14 |
C13 |
RU |
N18 |
135.4 |
288.2 |
| C14 |
C13 |
C12 |
C17 |
0.7 |
359.9 |
| C14 |
C13 |
C12 |
H12 |
180.7 |
179.8 |
| C16 |
C14 |
C13 |
H14 |
180.0 |
180.0 |
| C13 |
C14 |
C16 |
H16 |
180.5 |
180.0 |
| H13 |
C13 |
RU |
N20 |
86.4 |
305.3 |
| H13 |
C13 |
RU |
N18 |
257.3 |
50.4 |
| H13 |
C13 |
C12 |
C17 |
168.7 |
241.0 |
| H13 |
C13 |
C12 |
H12 |
348.7 |
60.9 |
| H13 |
C13 |
C14 |
C16 |
191.3 |
118.9 |
| H13 |
C13 |
C14 |
H14 |
11.3 |
298.9 |
| C12 |
C17 |
C16 |
C14 |
360.0 |
360.0 |
| C16 |
C14 |
C13 |
H13 |
191.3 |
118.9 |
| C13 |
C14 |
C16 |
H14 |
180.0 |
180.0 |
| C17 |
C16 |
C14 |
H16 |
180.0 |
180.0 |
| H14 |
C14 |
C13 |
H13 |
11.3 |
298.9 |
| C13 |
C14 |
H14 |
C16 |
180.0 |
180.0 |
| H14 |
C14 |
C16 |
H16 |
0.5 |
0.0 |
| C16 |
C17 |
C12 |
H12 |
179.6 |
180.2 |
| C12 |
C17 |
C16 |
H17 |
180.0 |
179.8 |
| C17 |
C16 |
C14 |
H14 |
180.5 |
180.0 |
| C14 |
C16 |
C17 |
H16 |
180.0 |
180.0 |
| H16 |
C16 |
C14 |
H14 |
0.5 |
0.0 |
| H17 |
C17 |
C12 |
H12 |
359.6 |
360.0 |
| C12 |
C17 |
H17 |
C16 |
180.0 |
180.3 |
| H17 |
C17 |
C16 |
H16 |
360.0 |
0.2 |
| C6 |
N20 |
RU |
N18 |
179.8 |
161.6 |
| RU |
N20 |
C6 |
C7 |
179.6 |
178.1 |
| C6 |
N20 |
C7 |
C21 |
179.8 |
189.8 |
| C6 |
N20 |
C7 |
C3 |
359.5 |
11.8 |
| C7 |
N20 |
RU |
N18 |
359.4 |
340.0 |
| C4 |
C3 |
C7 |
N20 |
0.3 |
352.1 |
| N18 |
C21 |
C7 |
N20 |
0.9 |
10.5 |
| C21 |
C7 |
N20 |
C3 |
180.3 |
178.0 |
| N20 |
C7 |
C3 |
C2 |
179.9 |
170.4 |
| C5 |
C6 |
N20 |
C7 |
0.4 |
352.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.1 |
| C6 |
C5 |
C4 |
C3 |
359.9 |
1.8 |
| C6 |
C5 |
C4 |
H4 |
179.9 |
181.7 |
| H6 |
C6 |
N20 |
C7 |
180.4 |
172.0 |
| H6 |
C6 |
C5 |
C4 |
179.8 |
181.3 |
| H6 |
C6 |
C5 |
H5 |
359.9 |
1.2 |
| C4 |
C5 |
C6 |
H6 |
179.8 |
181.3 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.9 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.1 |
| C5 |
C4 |
C3 |
C7 |
360.0 |
1.5 |
| C5 |
C4 |
C3 |
C2 |
180.5 |
183.5 |
| H5 |
C5 |
C6 |
H6 |
359.9 |
1.2 |
| C6 |
C5 |
H5 |
C4 |
180.0 |
180.1 |
| H5 |
C5 |
C4 |
C3 |
179.9 |
181.9 |
| H5 |
C5 |
C4 |
H4 |
359.9 |
1.8 |
| N20 |
C7 |
C3 |
C4 |
0.3 |
352.1 |
| C3 |
C4 |
C5 |
H5 |
179.9 |
181.9 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
179.9 |
| C21 |
C7 |
C3 |
C4 |
180.0 |
174.1 |
| C7 |
C3 |
C4 |
C2 |
179.5 |
178.1 |
| C4 |
C3 |
C2 |
C29 |
180.2 |
174.0 |
| C4 |
C3 |
C2 |
C1 |
359.7 |
354.2 |
| H4 |
C4 |
C5 |
H5 |
359.9 |
1.8 |
| C5 |
C4 |
H4 |
C3 |
180.0 |
180.1 |
| H4 |
C4 |
C3 |
C7 |
180.0 |
181.6 |
| H4 |
C4 |
C3 |
C2 |
0.5 |
3.6 |
| RU |
N18 |
C22 |
C21 |
182.1 |
255.1 |
| C22 |
N18 |
C21 |
C28 |
1.3 |
23.3 |
| C22 |
N18 |
C21 |
C7 |
180.1 |
216.0 |
| N18 |
C22 |
C27 |
C26 |
180.2 |
188.4 |
| N18 |
C22 |
C27 |
C28 |
0.4 |
14.5 |
| RU |
N18 |
C21 |
C22 |
178.5 |
119.9 |
| N20 |
C7 |
C21 |
N18 |
0.9 |
10.5 |
| C21 |
N18 |
C22 |
C27 |
359.0 |
337.5 |
| N18 |
C21 |
C28 |
C29 |
179.2 |
167.8 |
| N18 |
C21 |
C7 |
C3 |
181.2 |
188.5 |
| C23 |
C22 |
N18 |
C21 |
179.2 |
159.1 |
| C23 |
C22 |
C27 |
C28 |
180.2 |
193.1 |
| C27 |
C22 |
N18 |
C21 |
359.0 |
337.5 |
| C26 |
C27 |
C22 |
C28 |
179.8 |
174.0 |
| C22 |
C27 |
C26 |
H26 |
180.1 |
175.6 |
| C22 |
C27 |
C28 |
C29 |
180.0 |
179.5 |
| C22 |
C27 |
C26 |
C28 |
180.3 |
187.7 |
| C26 |
C27 |
C28 |
C29 |
0.2 |
6.3 |
| C25 |
C26 |
C27 |
H26 |
180.0 |
180.1 |
| N18 |
C21 |
C28 |
C27 |
359.0 |
347.3 |
| C22 |
C27 |
C28 |
C26 |
179.8 |
173.2 |
| C28 |
C27 |
C26 |
H26 |
359.8 |
347.9 |
| C21 |
C28 |
C27 |
C29 |
180.3 |
180.7 |
| C27 |
C28 |
C29 |
C2 |
180.2 |
192.1 |
| C27 |
C28 |
C29 |
C30 |
0.1 |
12.4 |
| C25 |
C26 |
C27 |
C28 |
179.8 |
168.0 |
| C27 |
C26 |
C25 |
H26 |
180.0 |
179.9 |
| H26 |
C26 |
C27 |
C28 |
359.8 |
347.9 |
| C24 |
C25 |
C26 |
H26 |
179.9 |
179.8 |
| C24 |
C25 |
O15 |
HO15 |
359.5 |
360.0 |
| O15 |
C25 |
C26 |
H26 |
359.3 |
359.7 |
| C23 |
C24 |
C25 |
O15 |
180.6 |
182.3 |
| H24 |
C24 |
C25 |
O15 |
0.6 |
2.4 |
| H23 |
C23 |
C24 |
H24 |
0.0 |
0.4 |
| N20 |
C7 |
C21 |
C28 |
179.6 |
204.9 |
| N18 |
C21 |
C28 |
C7 |
178.8 |
192.6 |
| C27 |
C28 |
C21 |
C29 |
179.8 |
179.5 |
| C21 |
C28 |
C29 |
C2 |
359.8 |
11.4 |
| C21 |
C28 |
C29 |
C30 |
179.8 |
191.6 |
| C3 |
C2 |
C29 |
C28 |
359.6 |
1.9 |
| C2 |
C29 |
C28 |
C30 |
180.1 |
179.7 |
| C28 |
C29 |
C2 |
C1 |
180.0 |
181.8 |
| C28 |
C29 |
C30 |
O8 |
0.3 |
358.5 |
| C28 |
C29 |
C30 |
N19 |
180.1 |
178.5 |
| N20 |
C7 |
C21 |
C3 |
179.7 |
182.0 |
| C4 |
C3 |
C7 |
C21 |
180.0 |
174.1 |
| N18 |
C21 |
C7 |
C28 |
181.3 |
165.5 |
| C7 |
C21 |
C28 |
C29 |
0.4 |
335.2 |
| C21 |
C7 |
C3 |
C2 |
359.6 |
352.4 |
| N20 |
C7 |
C3 |
C21 |
180.3 |
178.0 |
| C7 |
C3 |
C4 |
H4 |
180.0 |
181.6 |
| C4 |
C3 |
C7 |
C2 |
180.5 |
181.7 |
| C7 |
C3 |
C2 |
C29 |
0.7 |
356.0 |
| C7 |
C3 |
C2 |
C1 |
180.2 |
176.2 |
| C2 |
C3 |
C4 |
H4 |
0.5 |
3.6 |
| C4 |
C3 |
C2 |
C7 |
179.5 |
178.0 |
| C28 |
C29 |
C2 |
C3 |
359.6 |
1.9 |
| C3 |
C2 |
C29 |
C30 |
179.7 |
181.7 |
| C29 |
C2 |
C3 |
C1 |
180.5 |
179.8 |
| C3 |
C2 |
C1 |
N19 |
180.3 |
178.4 |
| C3 |
C2 |
C1 |
O9 |
0.2 |
358.5 |
| C28 |
C29 |
C2 |
C30 |
179.9 |
180.2 |
| C3 |
C2 |
C29 |
C1 |
179.6 |
180.1 |
| C2 |
C29 |
C30 |
O8 |
180.2 |
178.8 |
| C2 |
C29 |
C30 |
N19 |
0.0 |
358.7 |
| C29 |
C2 |
C1 |
N19 |
359.9 |
358.6 |
| C29 |
C2 |
C1 |
O9 |
179.8 |
178.6 |
| C28 |
C29 |
C30 |
C2 |
180.1 |
179.8 |
| C30 |
C29 |
C2 |
C1 |
0.0 |
1.6 |
| O8 |
C30 |
C29 |
N19 |
180.2 |
180.0 |
| C29 |
C30 |
N19 |
HN19 |
179.9 |
180.5 |
| C3 |
C2 |
C1 |
C29 |
180.4 |
179.8 |
| C1 |
C2 |
C29 |
C30 |
0.0 |
1.6 |
| C2 |
C1 |
N19 |
HN19 |
180.1 |
180.5 |
| C29 |
C30 |
O8 |
N19 |
179.8 |
180.0 |
| O8 |
C30 |
N19 |
HN19 |
359.7 |
0.5 |
| C29 |
C30 |
N19 |
O8 |
180.2 |
180.0 |
| C2 |
C1 |
N19 |
C30 |
0.1 |
0.6 |
| C1 |
N19 |
C30 |
HN19 |
180.0 |
179.9 |
| C2 |
C1 |
N19 |
O9 |
179.9 |
180.1 |
| C30 |
N19 |
C1 |
HN19 |
180.0 |
180.1 |
| C2 |
C1 |
O9 |
N19 |
180.1 |
179.9 |
| O9 |
C1 |
N19 |
HN19 |
0.2 |
0.5 |