PDB Chemical Component DVA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DVA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.475 |
1.468 |
| N |
H |
1.020 |
1.009 |
| N |
H2 |
1.019 |
1.009 |
| CA |
CB |
1.528 |
1.529 |
| CA |
C |
1.534 |
1.506 |
| CA |
HA |
1.116 |
1.090 |
| CB |
CG1 |
1.529 |
1.529 |
| CB |
CG2 |
1.537 |
1.530 |
| CB |
HB |
1.115 |
1.090 |
| CG1 |
HG11 |
1.115 |
1.089 |
| CG1 |
HG12 |
1.114 |
1.090 |
| CG1 |
HG13 |
1.116 |
1.090 |
| CG2 |
HG21 |
1.115 |
1.089 |
| CG2 |
HG22 |
1.115 |
1.090 |
| CG2 |
HG23 |
1.115 |
1.090 |
| C |
O |
1.238 |
1.207 |
| C |
OXT |
1.348 |
1.343 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for DVA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.8 |
106.7 |
| CA |
N |
H2 |
112.1 |
106.7 |
| N |
CA |
CB |
109.8 |
109.5 |
| N |
CA |
C |
109.7 |
109.5 |
| N |
CA |
HA |
109.3 |
109.5 |
| H |
N |
H2 |
112.1 |
106.6 |
| CB |
CA |
C |
110.0 |
109.5 |
| CB |
CA |
HA |
108.9 |
109.4 |
| CA |
CB |
CG1 |
112.7 |
109.6 |
| CA |
CB |
CG2 |
108.9 |
109.5 |
| CA |
CB |
HB |
107.7 |
109.5 |
| C |
CA |
HA |
109.1 |
109.5 |
| CA |
C |
O |
120.4 |
120.0 |
| CA |
C |
OXT |
118.6 |
120.0 |
| CG1 |
CB |
CG2 |
109.4 |
109.4 |
| CG1 |
CB |
HB |
107.2 |
109.5 |
| CB |
CG1 |
HG11 |
112.7 |
109.6 |
| CB |
CG1 |
HG12 |
111.1 |
109.4 |
| CB |
CG1 |
HG13 |
111.1 |
109.5 |
| CG2 |
CB |
HB |
111.0 |
109.4 |
| CB |
CG2 |
HG21 |
108.9 |
109.5 |
| CB |
CG2 |
HG22 |
112.4 |
109.5 |
| CB |
CG2 |
HG23 |
112.4 |
109.5 |
| HG11 |
CG1 |
HG12 |
111.0 |
109.5 |
| HG11 |
CG1 |
HG13 |
111.0 |
109.5 |
| HG12 |
CG1 |
HG13 |
99.3 |
109.4 |
| HG21 |
CG2 |
HG22 |
112.4 |
109.4 |
| HG21 |
CG2 |
HG23 |
112.5 |
109.4 |
| HG22 |
CG2 |
HG23 |
98.0 |
109.5 |
| O |
C |
OXT |
120.9 |
120.0 |
| C |
OXT |
HXT |
118.7 |
120.0 |
Torsion Angles for DVA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
113.7 |
| CB |
CA |
N |
C |
121.0 |
120.1 |
| CB |
CA |
N |
HA |
240.6 |
240.1 |
| N |
CA |
CB |
CG1 |
52.2 |
60.0 |
| N |
CA |
CB |
CG2 |
173.8 |
180.0 |
| N |
CA |
CB |
HB |
294.2 |
299.9 |
| C |
CA |
N |
HA |
119.6 |
120.0 |
| N |
CA |
C |
O |
65.9 |
30.0 |
| N |
CA |
C |
OXT |
243.5 |
210.0 |
| CA |
N |
H |
H2 |
234.7 |
246.2 |
| H |
N |
CA |
CB |
180.0 |
173.8 |
| H |
N |
CA |
C |
59.0 |
53.7 |
| H |
N |
CA |
HA |
299.4 |
293.7 |
| CA |
N |
H2 |
H |
124.0 |
113.8 |
| H2 |
N |
CA |
CB |
54.7 |
60.1 |
| H2 |
N |
CA |
C |
293.7 |
300.0 |
| H2 |
N |
CA |
HA |
174.1 |
180.0 |
| CB |
CA |
N |
H |
180.0 |
173.8 |
| CB |
CA |
N |
H2 |
54.7 |
60.1 |
| N |
CA |
CB |
C |
239.2 |
240.0 |
| N |
CA |
CB |
HA |
119.6 |
120.0 |
| C |
CA |
CB |
HA |
240.4 |
240.0 |
| CB |
CA |
C |
O |
305.0 |
270.0 |
| CB |
CA |
C |
OXT |
122.6 |
90.0 |
| CG1 |
CB |
CA |
CG2 |
238.4 |
240.0 |
| CG1 |
CB |
CA |
HB |
117.9 |
120.1 |
| CA |
CB |
CG1 |
HG11 |
180.0 |
180.0 |
| CA |
CB |
CG1 |
HG12 |
305.3 |
300.1 |
| CA |
CB |
CG1 |
HG13 |
54.7 |
59.9 |
| CG2 |
CB |
CA |
HB |
239.5 |
240.1 |
| CA |
CB |
CG2 |
HG21 |
180.1 |
299.9 |
| CA |
CB |
CG2 |
HG22 |
305.3 |
59.9 |
| CA |
CB |
CG2 |
HG23 |
54.7 |
180.0 |
| C |
CA |
N |
H |
59.0 |
53.7 |
| C |
CA |
N |
H2 |
293.7 |
300.0 |
| N |
CA |
C |
CB |
120.9 |
120.0 |
| N |
CA |
C |
HA |
240.3 |
240.0 |
| CB |
CA |
C |
HA |
119.5 |
120.0 |
| C |
CA |
CB |
CG1 |
173.0 |
180.0 |
| C |
CA |
CB |
CG2 |
294.6 |
300.0 |
| C |
CA |
CB |
HB |
55.0 |
59.9 |
| O |
C |
CA |
OXT |
182.3 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| HA |
CA |
N |
H |
299.4 |
293.7 |
| HA |
CA |
N |
H2 |
174.1 |
180.0 |
| N |
CA |
HA |
CB |
240.0 |
240.0 |
| N |
CA |
HA |
C |
119.9 |
120.0 |
| CB |
CA |
HA |
C |
239.9 |
240.0 |
| HA |
CA |
CB |
CG1 |
292.5 |
300.0 |
| HA |
CA |
CB |
CG2 |
54.1 |
60.0 |
| HA |
CA |
CB |
HB |
174.6 |
179.9 |
| HA |
CA |
C |
O |
185.5 |
150.0 |
| HA |
CA |
C |
OXT |
3.2 |
330.0 |
| CG1 |
CB |
CA |
C |
173.0 |
180.0 |
| CG1 |
CB |
CA |
HA |
292.5 |
300.0 |
| CA |
CB |
CG1 |
CG2 |
121.3 |
120.0 |
| CA |
CB |
CG1 |
HB |
241.8 |
239.9 |
| CG2 |
CB |
CG1 |
HB |
120.4 |
119.9 |
| CG1 |
CB |
CG2 |
HG21 |
303.6 |
60.0 |
| CG1 |
CB |
CG2 |
HG22 |
68.8 |
180.0 |
| CG1 |
CB |
CG2 |
HG23 |
178.3 |
300.1 |
| HG11 |
CG1 |
CB |
HG12 |
234.7 |
240.0 |
| HG11 |
CG1 |
CB |
HG13 |
125.2 |
120.1 |
| HG12 |
CG1 |
CB |
HG13 |
250.5 |
240.2 |
| CG2 |
CB |
CA |
C |
294.6 |
300.0 |
| CG2 |
CB |
CA |
HA |
54.1 |
60.0 |
| CA |
CB |
CG2 |
CG1 |
236.4 |
239.9 |
| CA |
CB |
CG2 |
HB |
118.4 |
120.0 |
| CG1 |
CB |
CG2 |
HB |
241.9 |
240.1 |
| CG2 |
CB |
CG1 |
HG11 |
58.7 |
60.0 |
| CG2 |
CB |
CG1 |
HG12 |
183.9 |
180.0 |
| CG2 |
CB |
CG1 |
HG13 |
293.4 |
299.9 |
| HG21 |
CG2 |
CB |
HG22 |
234.8 |
240.0 |
| HG21 |
CG2 |
CB |
HG23 |
125.4 |
120.0 |
| HG22 |
CG2 |
CB |
HG23 |
250.6 |
240.0 |
| HB |
CB |
CA |
C |
55.0 |
59.9 |
| HB |
CB |
CA |
HA |
174.6 |
179.9 |
| CA |
CB |
HB |
CG1 |
121.4 |
120.2 |
| CA |
CB |
HB |
CG2 |
240.9 |
240.1 |
| CG1 |
CB |
HB |
CG2 |
119.4 |
119.9 |
| HB |
CB |
CG1 |
HG11 |
298.2 |
300.1 |
| HB |
CB |
CG1 |
HG12 |
63.5 |
60.2 |
| HB |
CB |
CG1 |
HG13 |
173.0 |
180.0 |
| HB |
CB |
CG2 |
HG21 |
61.7 |
180.0 |
| HB |
CB |
CG2 |
HG22 |
186.9 |
300.0 |
| HB |
CB |
CG2 |
HG23 |
296.3 |
60.0 |
| HG11 |
CG1 |
CB |
CG2 |
58.7 |
60.0 |
| HG11 |
CG1 |
CB |
HB |
298.2 |
300.1 |
| CB |
CG1 |
HG11 |
HG12 |
125.3 |
120.0 |
| CB |
CG1 |
HG11 |
HG13 |
234.7 |
239.9 |
| HG12 |
CG1 |
HG11 |
HG13 |
109.4 |
119.9 |
| HG12 |
CG1 |
CB |
CG2 |
183.9 |
180.0 |
| HG12 |
CG1 |
CB |
HB |
63.5 |
60.2 |
| CB |
CG1 |
HG12 |
HG11 |
233.8 |
239.9 |
| CB |
CG1 |
HG12 |
HG13 |
117.0 |
119.9 |
| HG11 |
CG1 |
HG12 |
HG13 |
243.2 |
240.0 |
| HG13 |
CG1 |
CB |
CG2 |
293.4 |
299.9 |
| HG13 |
CG1 |
CB |
HB |
173.0 |
180.0 |
| CB |
CG1 |
HG13 |
HG11 |
126.2 |
120.2 |
| CB |
CG1 |
HG13 |
HG12 |
243.0 |
240.1 |
| HG11 |
CG1 |
HG13 |
HG12 |
116.8 |
120.0 |
| HG21 |
CG2 |
CB |
HB |
61.7 |
180.0 |
| CB |
CG2 |
HG21 |
HG22 |
125.2 |
120.0 |
| CB |
CG2 |
HG21 |
HG23 |
234.7 |
240.0 |
| HG22 |
CG2 |
HG21 |
HG23 |
109.4 |
120.0 |
| HG22 |
CG2 |
CB |
HB |
186.9 |
300.0 |
| CB |
CG2 |
HG22 |
HG21 |
236.7 |
240.0 |
| CB |
CG2 |
HG22 |
HG23 |
118.3 |
120.0 |
| HG21 |
CG2 |
HG22 |
HG23 |
241.6 |
240.1 |
| HG23 |
CG2 |
CB |
HB |
296.3 |
60.0 |
| CB |
CG2 |
HG23 |
HG21 |
123.4 |
120.0 |
| CB |
CG2 |
HG23 |
HG22 |
241.7 |
239.9 |
| HG21 |
CG2 |
HG23 |
HG22 |
118.3 |
119.9 |
| O |
C |
CA |
HA |
185.5 |
150.0 |
| CA |
C |
O |
OXT |
177.6 |
180.0 |
| O |
C |
OXT |
HXT |
357.6 |
360.0 |
| OXT |
C |
CA |
HA |
3.2 |
330.0 |
| CA |
C |
OXT |
O |
182.4 |
180.0 |