PDB Chemical Component DUT

Ideal Model

Chemical Description

Name DEOXYURIDINE-5'-TRIPHOSPHATE
Formula C9 H15 N2 O14 P3
Formal charge 0
Molecular weight 468.142 g/mol
Component type NON-POLYMER

Chemical features

Atom count 43
Chiral atom count 5
Chiral atoms C1' C3' C4' PA PB
Bond count 44
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxyuridine 5'-(tetrahydrogen triphosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(2,4-dioxopyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl (hydroxy-phosphonooxy-phosphoryl) hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O
InChI descriptor InChI=1S/C9H15N2O14P3/c12-5-3-8(11-2-1-7(13)10-9(11)14)23-6(5)4-22-27(18,19)25-28(20,21)24-26(15,16)17/h1-2,5-6,8,12H,3-4H2,(H,18,19)(H,20,21)(H,10,13,14)(H2,15,16,17)/t5-,6+,8+/m0/s1
InChIKey descriptor AHCYMLUZIRLXAA-SHYZEUOFSA-N

Status Information

Last modified 2011-06-04
Created 2000-05-11
Release status REL
Model PDB code 1EXC
Processing site RCSB