PDB Chemical Component DUT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DUT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.389 1.345
N1 C6 1.377 1.368
N1 C1' 1.471 1.464
C2 N3 1.368 1.346
C2 O2 1.220 1.216
N3 C4 1.377 1.348
N3 HN3 1.019 0.970
C4 C5 1.431 1.415
C4 O4 1.231 1.218
C5 C6 1.337 1.350
C5 H5 1.103 1.079
C6 H6 1.103 1.080
C1' C2' 1.527 1.545
C1' O4' 1.426 1.445
C1' H1' 1.115 1.090
C2' C3' 1.517 1.545
C2' H2'1 1.116 1.090
C2' H2'2 1.115 1.090
C3' C4' 1.524 1.544
C3' O3' 1.434 1.429
C3' H3' 1.115 1.090
C4' O4' 1.444 1.446
C4' C5' 1.510 1.529
C4' H4' 1.116 1.091
O3' HO3' 0.950 0.967
C5' O5' 1.446 1.429
C5' H5'1 1.115 1.090
C5' H5'2 1.114 1.090
O5' PA 1.631 1.608
PA O1A 1.487 1.480
PA O2A 1.487 1.610
PA O3A 1.631 1.608
O2A HOA2 0.950 0.967
O3A PB 1.629 1.610
PB O1B 1.484 1.479
PB O2B 1.483 1.609
PB O3B 1.625 1.610
O2B HOB2 0.951 0.966
O3B PG 1.627 1.611
PG O1G 1.520 1.479
PG O2G 1.520 1.610
PG O3G 1.520 1.609
O2G HOG2 0.950 0.967
O3G HOG3 0.950 0.966

Bond Angles for DUT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 120.9 120.6
C2 N1 C1' 117.9 119.7
N1 C2 N3 114.9 120.9
N1 C2 O2 123.2 119.5
C6 N1 C1' 121.2 119.7
N1 C6 C5 122.6 119.7
N1 C6 H6 120.2 120.2
N1 C1' C2' 114.5 110.4
N1 C1' O4' 108.0 110.5
N1 C1' H1' 106.4 110.3
N3 C2 O2 121.9 119.5
C2 N3 C4 127.2 120.3
C2 N3 HN3 116.0 119.9
C4 N3 HN3 116.8 119.9
N3 C4 C5 114.8 119.4
N3 C4 O4 119.2 120.3
C5 C4 O4 126.0 120.3
C4 C5 C6 119.7 119.1
C4 C5 H5 123.6 120.4
C6 C5 H5 116.8 120.5
C5 C6 H6 117.2 120.2
C2' C1' O4' 107.1 104.8
C2' C1' H1' 107.2 110.4
C1' C2' C3' 103.2 104.1
C1' C2' H2'1 114.6 110.5
C1' C2' H2'2 114.6 110.6
O4' C1' H1' 113.8 110.4
C1' O4' C4' 110.2 105.4
C3' C2' H2'1 114.5 110.5
C3' C2' H2'2 114.5 110.5
C2' C3' C4' 102.8 104.2
C2' C3' O3' 113.4 110.5
C2' C3' H3' 111.8 110.5
H2'1 C2' H2'2 95.9 110.5
C4' C3' O3' 110.6 110.5
C4' C3' H3' 114.5 110.5
C3' C4' O4' 104.9 104.7
C3' C4' C5' 114.4 110.7
C3' C4' H4' 109.4 110.2
O3' C3' H3' 104.1 110.4
C3' O3' HO3' 113.4 106.8
O4' C4' C5' 109.7 110.4
O4' C4' H4' 114.1 110.4
C5' C4' H4' 104.6 110.3
C4' C5' O5' 110.4 109.5
C4' C5' H5'1 111.9 109.5
C4' C5' H5'2 111.9 109.4
O5' C5' H5'1 111.9 109.4
O5' C5' H5'2 111.9 109.4
C5' O5' PA 121.3 106.9
H5'1 C5' H5'2 98.6 109.4
O5' PA O1A 107.3 109.4
O5' PA O2A 107.0 109.5
O5' PA O3A 107.0 109.5
O1A PA O2A 120.7 109.4
O1A PA O3A 106.8 109.4
O2A PA O3A 107.3 109.5
PA O2A HOA2 107.0 106.8
PA O3A PB 131.9 106.8
O3A PB O1B 107.1 109.5
O3A PB O2B 108.2 109.4
O3A PB O3B 106.2 109.5
O1B PB O2B 120.6 109.5
O1B PB O3B 107.3 109.5
O2B PB O3B 106.6 109.5
PB O2B HOB2 108.2 106.9
PB O3B PG 132.3 106.8
O3B PG O1G 105.4 109.5
O3B PG O2G 106.2 109.5
O3B PG O3G 106.1 109.5
O1G PG O2G 112.8 109.4
O1G PG O3G 113.8 109.5
O2G PG O3G 111.8 109.5
PG O2G HOG2 106.2 106.8
PG O3G HOG3 106.1 106.8

Torsion Angles for DUT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 C1' 179.8 179.8
C2 N1 C6 C5 359.6 0.2
C2 N1 C6 H6 179.6 180.2
C2 N1 C1' C2' 111.1 299.7
C2 N1 C1' O4' 230.4 55.1
C2 N1 C1' H1' 352.9 177.5
N3 C2 N1 O2 179.8 179.5
N1 C2 N3 C4 359.7 0.4
N1 C2 N3 HN3 179.7 180.3
C2 N1 C6 C1' 180.2 180.2
C6 N1 C2 N3 0.6 359.6
C6 N1 C2 O2 180.8 180.0
C6 N1 C1' C2' 291.4 120.0
C6 N1 C1' O4' 50.6 235.4
C6 N1 C1' H1' 173.1 357.7
C4 C5 C6 N1 359.9 0.1
N1 C6 C5 H5 179.9 180.0
C5 C6 N1 H6 180.0 180.0
C2 N1 C1' C6 179.8 179.8
C1' N1 C2 N3 180.8 179.8
C1' N1 C2 O2 1.0 0.3
C1' N1 C6 C5 179.3 179.9
C1' N1 C6 H6 359.3 360.0
C2' C1' N1 O4' 240.8 244.6
C2' C1' N1 H1' 118.2 122.2
N1 C1' C2' C3' 98.8 142.9
N1 C1' C2' H2'1 224.1 24.3
N1 C1' C2' H2'2 333.6 261.6
O4' C1' N1 H1' 237.5 237.7
N1 C1' O4' C4' 236.3 200.7
N3 C2 N1 C6 0.6 359.6
N3 C2 N1 C1' 180.8 179.8
N1 C2 N3 O2 180.2 180.5
C4 N3 C2 HN3 180.0 180.2
C2 N3 C4 C5 359.8 359.8
C2 N3 C4 O4 179.7 179.7
O2 C2 N1 C6 180.8 180.0
O2 C2 N1 C1' 1.0 0.3
N1 C2 O2 N3 179.8 179.5
O2 C2 N3 C4 179.5 180.0
O2 C2 N3 HN3 359.5 359.8
C4 N3 C2 O2 179.5 180.0
C2 N3 C4 HN3 180.0 179.8
C5 C4 N3 O4 180.2 180.1
N3 C4 C5 C6 0.4 359.9
N3 C4 C5 H5 180.3 180.0
HN3 N3 C2 O2 359.5 359.8
C2 N3 HN3 C4 180.0 180.2
HN3 N3 C4 C5 179.8 180.0
HN3 N3 C4 O4 359.7 359.9
N1 C6 C5 C4 359.9 0.1
C5 C4 N3 HN3 179.8 180.0
N3 C4 C5 O4 179.8 179.9
C6 C5 C4 H5 180.0 179.9
C4 C5 C6 H6 179.9 180.0
O4 C4 N3 HN3 359.7 359.9
N3 C4 O4 C5 180.2 180.1
O4 C4 C5 C6 180.5 180.0
O4 C4 C5 H5 0.5 0.1
C5 C6 N1 C1' 179.3 179.9
N1 C6 C5 H6 180.0 180.0
C6 C5 C4 O4 180.5 180.0
C4 C5 C6 H5 180.0 180.1
H5 C5 C4 O4 0.5 0.1
C4 C5 H5 C6 180.0 179.9
H5 C5 C6 H6 359.9 360.0
H6 C6 N1 C1' 359.3 360.0
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 H5 359.9 360.0
N1 C1' C2' O4' 119.8 119.0
N1 C1' C2' H1' 242.3 237.8
O4' C1' C2' H1' 122.5 118.8
C2' C1' O4' C4' 0.2 319.6
C3' C2' C1' H2'1 234.8 118.6
C3' C2' C1' H2'2 125.2 241.4
C1' C2' C3' C4' 32.4 359.9
C1' C2' C3' O3' 151.8 118.7
C1' C2' C3' H3' 269.1 241.2
H2'1 C2' C1' H2'2 250.5 122.7
N1 C1' O4' C2' 236.2 241.1
N1 C1' O4' H1' 117.9 122.3
C2' C1' O4' H1' 241.7 241.2
O4' C1' C2' C3' 339.1 24.0
O4' C1' C2' H2'1 104.3 265.3
O4' C1' C2' H2'2 213.8 142.6
C3' C4' O4' C1' 20.7 40.3
C1' O4' C4' C5' 144.0 159.5
C1' O4' C4' H4' 261.0 281.7
N1 C1' H1' C2' 123.0 122.3
N1 C1' H1' O4' 241.2 237.6
C2' C1' H1' O4' 118.2 115.3
H1' C1' C2' C3' 216.6 265.2
H1' C1' C2' H2'1 341.8 146.5
H1' C1' C2' H2'2 91.3 23.8
H1' C1' O4' C4' 118.5 78.4
C3' C2' C1' O4' 339.1 24.0
C3' C2' C1' H1' 216.6 265.2
C1' C2' C3' H2'1 125.3 241.4
C1' C2' C3' H2'2 234.7 118.7
H2'1 C2' C3' H2'2 109.4 237.3
C4' C3' C2' O3' 240.6 241.2
C4' C3' C2' H3' 123.3 118.7
C2' C3' C4' O4' 327.0 336.2
C2' C3' C4' C5' 206.8 217.3
C2' C3' C4' H4' 89.9 95.0
O3' C3' C2' H3' 242.7 237.5
C2' C3' O3' HO3' 180.0 63.3
H2'1 C2' C1' O4' 104.3 265.3
H2'1 C2' C1' H1' 341.8 146.5
C1' C2' H2'1 C3' 240.9 114.6
C1' C2' H2'1 H2'2 120.5 237.3
C3' C2' H2'1 H2'2 239.6 122.6
H2'1 C2' C3' C4' 267.1 118.5
H2'1 C2' C3' O3' 26.5 237.3
H2'1 C2' C3' H3' 143.8 359.9
H2'2 C2' C1' O4' 213.8 142.6
H2'2 C2' C1' H1' 91.3 23.8
C1' C2' H2'2 C3' 119.1 245.3
C1' C2' H2'2 H2'1 239.5 122.7
C3' C2' H2'2 H2'1 120.4 237.4
H2'2 C2' C3' C4' 157.7 241.2
H2'2 C2' C3' O3' 277.1 360.0
H2'2 C2' C3' H3' 34.4 122.5
C1' O4' C4' C3' 20.7 40.3
C4' C3' C2' H2'1 267.1 118.5
C4' C3' C2' H2'2 157.7 241.2
C2' C3' C4' O3' 121.3 118.8
C2' C3' C4' H3' 238.6 241.3
O3' C3' C4' H3' 117.2 122.5
C4' C3' O3' HO3' 294.8 178.1
O4' C4' C3' C5' 120.2 119.0
O4' C4' C3' H4' 237.2 241.3
C5' C4' C3' H4' 116.9 122.3
C3' C4' C5' O5' 219.9 176.9
C3' C4' C5' H5'1 345.1 296.9
C3' C4' C5' H5'2 94.6 56.9
O3' C3' C2' H2'1 26.5 237.3
O3' C3' C2' H2'2 277.1 360.0
C2' C3' O3' C4' 245.2 245.2
C2' C3' O3' H3' 121.7 122.6
C4' C3' O3' H3' 236.5 237.4
O3' C3' C4' O4' 205.7 217.4
O3' C3' C4' C5' 85.5 98.5
O3' C3' C4' H4' 328.5 336.2
H3' C3' C2' H2'1 143.8 359.9
H3' C3' C2' H2'2 34.4 122.5
C2' C3' H3' C4' 116.3 114.8
C2' C3' H3' O3' 237.2 237.4
C4' C3' H3' O3' 120.9 122.6
H3' C3' C4' O4' 88.5 94.9
H3' C3' C4' C5' 328.2 336.0
H3' C3' C4' H4' 211.3 213.7
H3' C3' O3' HO3' 58.3 300.7
C4' O4' C1' H1' 118.5 78.4
O4' C4' C3' O3' 205.7 217.4
O4' C4' C3' H3' 88.5 94.9
C3' C4' O4' C5' 236.7 240.8
C3' C4' O4' H4' 119.8 118.6
C5' C4' O4' H4' 243.0 237.8
O4' C4' C5' O5' 102.4 61.4
O4' C4' C5' H5'1 227.6 181.5
O4' C4' C5' H5'2 337.1 301.5
C5' C4' C3' O3' 85.5 98.5
C5' C4' C3' H3' 328.2 336.0
C3' C4' C5' O4' 117.5 115.5
C3' C4' C5' H4' 240.3 237.7
O4' C4' C5' H4' 122.8 122.3
O5' C5' C4' H5'1 234.8 240.0
O5' C5' C4' H5'2 125.2 120.0
C4' C5' O5' PA 298.7 180.0
H5'1 C5' C4' H5'2 250.5 240.0
H4' C4' C3' O3' 328.5 336.2
H4' C4' C3' H3' 211.3 213.7
C3' C4' H4' O4' 242.8 244.8
C3' C4' H4' C5' 122.9 122.6
O4' C4' H4' C5' 240.1 237.7
H4' C4' C5' O5' 339.6 299.2
H4' C4' C5' H5'1 104.8 59.2
H4' C4' C5' H5'2 214.3 179.2
HO3' O3' C3' H3' 58.3 300.7
O5' C5' C4' H4' 339.6 299.2
C4' C5' O5' H5'1 125.2 120.1
C4' C5' O5' H5'2 234.7 240.0
H5'1 C5' O5' H5'2 109.5 119.9
C5' O5' PA O1A 296.1 300.0
C5' O5' PA O2A 67.0 60.0
C5' O5' PA O3A 181.8 180.0
H5'1 C5' C4' H4' 104.8 59.2
C4' C5' H5'1 O5' 235.6 239.9
C4' C5' H5'1 H5'2 117.8 120.0
O5' C5' H5'1 H5'2 242.2 240.1
H5'1 C5' O5' PA 173.5 59.9
H5'2 C5' C4' H4' 214.3 179.2
C4' C5' H5'2 O5' 124.4 120.0
C4' C5' H5'2 H5'1 242.2 239.9
O5' C5' H5'2 H5'1 117.8 119.9
H5'2 C5' O5' PA 63.9 300.0
PA O5' C5' H5'1 173.5 59.9
PA O5' C5' H5'2 63.9 300.0
O1A PA O5' O2A 229.1 240.1
O1A PA O5' O3A 114.3 120.0
O2A PA O5' O3A 245.2 239.9
O5' PA O2A HOA2 179.9 60.0
O5' PA O3A PB 45.2 180.0
O5' PA O1A O2A 122.8 119.9
O5' PA O1A O3A 245.6 240.0
O2A PA O1A O3A 122.8 120.0
O1A PA O2A HOA2 302.8 180.0
O1A PA O3A PB 290.6 60.0
O5' PA O2A O1A 237.1 240.1
O5' PA O2A O3A 114.6 120.1
O1A PA O2A O3A 237.4 240.0
O2A PA O3A PB 159.8 300.0
O5' PA O3A O1A 114.6 120.0
O5' PA O3A O2A 245.4 240.0
O1A PA O3A O2A 130.8 120.0
O3A PA O2A HOA2 65.4 299.9
PA O3A PB O1B 287.8 60.0
PA O3A PB O2B 156.4 299.9
PA O3A PB O3B 42.3 180.0
HOA2 O2A PA O3A 65.4 299.9
O1B PB O3A O2B 131.4 120.1
O1B PB O3A O3B 245.6 240.0
O2B PB O3A O3B 114.1 120.0
O3A PB O2B HOB2 180.0 300.0
O3A PB O3B PG 205.3 180.0
O3A PB O1B O2B 235.9 240.0
O3A PB O1B O3B 113.7 120.0
O2B PB O1B O3B 237.8 240.0
O1B PB O2B HOB2 56.4 180.0
O1B PB O3B PG 319.6 300.0
O3A PB O2B O1B 123.6 120.0
O3A PB O2B O3B 246.1 240.0
O1B PB O2B O3B 122.5 120.0
O2B PB O3B PG 90.1 60.0
O3A PB O3B O1B 245.7 240.0
O3A PB O3B O2B 115.2 119.9
O1B PB O3B O2B 229.5 239.9
O3B PB O2B HOB2 293.8 59.9
PB O3B PG O1G 203.4 60.0
PB O3B PG O2G 323.2 180.0
PB O3B PG O3G 82.3 300.0
HOB2 O2B PB O3B 293.8 59.9
O1G PG O3B O2G 240.1 240.1
O1G PG O3B O3G 121.0 120.1
O2G PG O3B O3G 240.9 240.0
O3B PG O2G HOG2 179.9 180.0
O3B PG O3G HOG3 180.1 300.0
O3B PG O1G O2G 115.4 120.0
O3B PG O1G O3G 244.2 239.9
O2G PG O1G O3G 128.7 120.0
O1G PG O2G HOG2 294.9 300.0
O1G PG O3G HOG3 64.6 180.0
O3B PG O2G O1G 245.1 240.0
O3B PG O2G O3G 115.3 120.0
O1G PG O2G O3G 230.2 240.0
O2G PG O3G HOG3 295.4 60.0
O3B PG O3G O1G 115.4 120.0
O3B PG O3G O2G 244.7 240.0
O1G PG O3G O2G 129.3 120.0
O3G PG O2G HOG2 64.7 60.0
HOG2 O2G PG O3G 64.7 60.0