PDB Chemical Component DUP

Ideal Model

Chemical Description

Name 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE
Formula C9 H16 N3 O13 P3
Formal charge 0
Molecular weight 467.157 g/mol
Component type NON-POLYMER

Chemical features

Atom count 44
Chiral atom count 5
Chiral atoms C1' C3' C4' PA PB
Bond count 45
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5'-O-[(S)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(2,4-dioxopyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methoxy-N-(hydroxy-phosphonooxy-phosphoryl)phosphonamidic acid

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P@](O)(=O)N[P@](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)CO[P@](=O)(N[P@@](=O)(O)OP(=O)(O)O)O)O
InChI descriptor InChI=1S/C9H16N3O13P3/c13-5-3-8(12-2-1-7(14)10-9(12)15)24-6(5)4-23-26(16,17)11-27(18,19)25-28(20,21)22/h1-2,5-6,8,13H,3-4H2,(H,10,14,15)(H2,20,21,22)(H3,11,16,17,18,19)/t5-,6+,8+/m0/s1
InChIKey descriptor XZLLMTSKYYYJLH-SHYZEUOFSA-N

Status Information

Last modified 2011-06-04
Created 2003-12-17
Release status REL
Model PDB code 1RN8
Processing site RCSB