PDB Chemical Component DUA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DUA
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C2 |
N1 |
1.375 |
1.345 |
C6 |
N1 |
1.337 |
1.368 |
N1 |
C1' |
1.425 |
1.465 |
C3' |
O1 |
1.418 |
1.429 |
O1 |
HO1 |
0.950 |
0.967 |
N3 |
C2 |
1.314 |
1.346 |
C2 |
O2 |
1.240 |
1.216 |
C17 |
N2 |
1.470 |
1.468 |
N2 |
C5' |
1.494 |
1.469 |
N2 |
HN2 |
1.000 |
1.009 |
C4 |
N3 |
1.354 |
1.348 |
O4 |
C4 |
1.258 |
1.218 |
C4 |
C5 |
1.375 |
1.416 |
C5 |
C6 |
1.342 |
1.350 |
C5 |
H5 |
1.080 |
1.080 |
C6 |
H6 |
1.080 |
1.080 |
O4' |
C1' |
1.448 |
1.437 |
C1' |
C2' |
1.487 |
1.541 |
C1' |
H1' |
1.100 |
1.091 |
C30 |
C17 |
1.521 |
1.508 |
C18 |
C17 |
1.587 |
1.507 |
C24 |
C17 |
1.494 |
1.507 |
C23 |
C18 |
1.405 |
1.383 |
C18 |
C19 |
1.432 |
1.382 |
C20 |
C19 |
1.427 |
1.382 |
C19 |
H19 |
1.080 |
1.080 |
C3' |
C2' |
1.550 |
1.548 |
C2' |
H2' |
1.100 |
1.089 |
C2' |
H2'A |
1.100 |
1.090 |
C21 |
C20 |
1.387 |
1.383 |
C20 |
H20 |
1.080 |
1.080 |
C22 |
C21 |
1.393 |
1.383 |
C21 |
H21 |
1.080 |
1.080 |
C22 |
C23 |
1.427 |
1.383 |
C22 |
H22 |
1.080 |
1.079 |
C23 |
H23 |
1.079 |
1.080 |
C25 |
C24 |
1.413 |
1.383 |
C24 |
C29 |
1.384 |
1.382 |
C26 |
C25 |
1.408 |
1.382 |
C25 |
H25 |
1.080 |
1.080 |
C26 |
C27 |
1.390 |
1.383 |
C26 |
H26 |
1.080 |
1.080 |
C27 |
C28 |
1.405 |
1.383 |
C27 |
H27 |
1.080 |
1.080 |
C28 |
C29 |
1.422 |
1.382 |
C28 |
H28 |
1.080 |
1.080 |
C29 |
H29 |
1.080 |
1.079 |
C4' |
C3' |
1.531 |
1.550 |
C3' |
H3' |
1.100 |
1.090 |
C35 |
C30 |
1.420 |
1.382 |
C30 |
C31 |
1.396 |
1.382 |
C32 |
C31 |
1.382 |
1.383 |
C31 |
H31 |
1.080 |
1.079 |
C33 |
C32 |
1.403 |
1.383 |
C32 |
H32 |
1.080 |
1.080 |
C34 |
C33 |
1.399 |
1.382 |
C33 |
H33 |
1.080 |
1.080 |
C34 |
C35 |
1.381 |
1.383 |
C34 |
H34 |
1.080 |
1.080 |
C35 |
H35 |
1.080 |
1.080 |
C5' |
C4' |
1.494 |
1.530 |
C4' |
O4' |
1.416 |
1.444 |
C4' |
H4' |
1.100 |
1.089 |
C5' |
H5' |
1.100 |
1.090 |
C5' |
H5'A |
1.100 |
1.090 |
N3 |
HN3 |
1.000 |
0.970 |
Bond Angles for DUA
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C1' |
121.4 |
119.7 |
C6 |
N1 |
C1' |
113.5 |
119.7 |
N1 |
C1' |
C2' |
130.2 |
109.9 |
N1 |
C1' |
H1' |
60.2 |
109.9 |
C3' |
O1 |
HO1 |
109.5 |
114.0 |
C17 |
N2 |
C5' |
115.5 |
111.0 |
C17 |
N2 |
HN2 |
107.5 |
111.0 |
C5' |
N2 |
HN2 |
107.5 |
111.0 |
N2 |
C5' |
C4' |
114.8 |
109.5 |
N2 |
C5' |
H5' |
107.7 |
109.5 |
N2 |
C5' |
H5'A |
107.7 |
109.5 |
C4 |
N3 |
HN3 |
120.2 |
119.9 |
O4 |
C4 |
C5 |
115.4 |
120.3 |
C4 |
C5 |
C6 |
117.7 |
119.1 |
C4 |
C5 |
H5 |
121.2 |
120.4 |
C6 |
C5 |
H5 |
121.2 |
120.5 |
C5 |
C6 |
H6 |
120.9 |
120.1 |
O4' |
C1' |
H1' |
127.5 |
110.0 |
C2' |
C1' |
H1' |
102.5 |
109.9 |
C1' |
C2' |
H2' |
117.3 |
110.5 |
C1' |
C2' |
H2'A |
117.3 |
110.5 |
C18 |
C19 |
H19 |
116.5 |
120.0 |
C20 |
C19 |
H19 |
116.5 |
120.0 |
C3' |
C2' |
H2' |
117.3 |
110.5 |
C3' |
C2' |
H2'A |
117.3 |
110.6 |
H2' |
C2' |
H2'A |
100.6 |
110.5 |
C21 |
C20 |
H20 |
120.2 |
120.0 |
C22 |
C21 |
H21 |
122.3 |
120.0 |
C23 |
C22 |
H22 |
118.0 |
120.0 |
C22 |
C23 |
H23 |
118.5 |
120.0 |
C25 |
C24 |
C29 |
116.4 |
120.0 |
C24 |
C29 |
C28 |
119.4 |
120.0 |
C24 |
C29 |
H29 |
120.3 |
120.0 |
C26 |
C25 |
H25 |
117.6 |
120.0 |
C27 |
C26 |
H26 |
121.0 |
120.0 |
C26 |
C27 |
C28 |
118.1 |
120.0 |
C26 |
C27 |
H27 |
120.9 |
120.0 |
C28 |
C27 |
H27 |
120.9 |
120.0 |
C27 |
C28 |
C29 |
123.1 |
120.0 |
C27 |
C28 |
H28 |
118.5 |
119.9 |
C29 |
C28 |
H28 |
118.5 |
120.0 |
C28 |
C29 |
H29 |
120.3 |
120.0 |
C4' |
C3' |
H3' |
114.3 |
110.9 |
C30 |
C31 |
H31 |
119.7 |
120.0 |
C32 |
C31 |
H31 |
119.7 |
120.0 |
C33 |
C32 |
H32 |
120.4 |
120.0 |
C34 |
C33 |
H33 |
118.6 |
120.0 |
C35 |
C34 |
H34 |
122.0 |
120.0 |
C34 |
C35 |
H35 |
118.3 |
120.0 |
C5' |
C4' |
H4' |
100.2 |
110.6 |
O4' |
C4' |
H4' |
116.4 |
110.6 |
H5' |
C5' |
H5'A |
111.2 |
109.4 |
Torsion Angles for DUA
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
N1 |
C2 |
C1' |
190.4 |
180.3 |
C2 |
N1 |
C1' |
C2' |
139.2 |
115.0 |
C2 |
N1 |
C1' |
H1' |
58.4 |
354.0 |
C2 |
N1 |
C6 |
C1' |
170.3 |
179.7 |
C6 |
N1 |
C1' |
C2' |
309.9 |
294.7 |
C6 |
N1 |
C1' |
H1' |
229.0 |
173.7 |
O4' |
C1' |
N1 |
H1' |
241.7 |
238.9 |
C2' |
C1' |
N1 |
H1' |
80.9 |
121.0 |
N1 |
C1' |
C2' |
H2' |
228.7 |
240.2 |
N1 |
C1' |
C2' |
H2'A |
348.7 |
2.7 |
N3 |
C2 |
N1 |
C1' |
175.6 |
180.0 |
O2 |
C2 |
N1 |
C1' |
351.9 |
0.0 |
C5' |
N2 |
C17 |
HN2 |
240.0 |
236.0 |
C17 |
N2 |
C5' |
C4' |
203.6 |
173.5 |
C17 |
N2 |
C5' |
H5' |
323.6 |
293.5 |
C17 |
N2 |
C5' |
H5'A |
83.6 |
53.5 |
C17 |
N2 |
C5' |
HN2 |
120.0 |
124.0 |
N2 |
C5' |
C4' |
H4' |
287.7 |
308.0 |
H5' |
C5' |
N2 |
H5'A |
240.0 |
240.0 |
C17 |
N2 |
HN2 |
C5' |
235.1 |
236.0 |
HN2 |
N2 |
C5' |
C4' |
83.6 |
49.5 |
HN2 |
N2 |
C5' |
H5' |
203.6 |
169.5 |
HN2 |
N2 |
C5' |
H5'A |
323.6 |
289.5 |
O4 |
C4 |
N3 |
HN3 |
3.2 |
0.0 |
O4 |
C4 |
C5 |
C6 |
177.5 |
179.7 |
O4 |
C4 |
C5 |
H5 |
357.5 |
360.0 |
C5 |
C4 |
N3 |
HN3 |
184.1 |
180.0 |
C6 |
C5 |
C4 |
H5 |
180.0 |
179.7 |
C4 |
C5 |
C6 |
H6 |
183.9 |
180.0 |
C5 |
C6 |
N1 |
C1' |
184.3 |
179.7 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.3 |
C4 |
C5 |
H5 |
C6 |
180.0 |
179.7 |
H5 |
C5 |
C6 |
H6 |
3.9 |
359.7 |
H6 |
C6 |
N1 |
C1' |
4.3 |
0.2 |
H6 |
C6 |
C5 |
H5 |
3.9 |
359.7 |
N1 |
C1' |
O4' |
H1' |
74.4 |
121.1 |
C2' |
C1' |
O4' |
H1' |
239.3 |
240.5 |
O4' |
C1' |
C2' |
H2' |
65.7 |
120.7 |
O4' |
C1' |
C2' |
H2'A |
185.7 |
243.3 |
N1 |
C1' |
C2' |
H1' |
298.7 |
239.0 |
O4' |
C1' |
C2' |
H1' |
135.7 |
119.6 |
C3' |
C2' |
C1' |
H2' |
240.0 |
241.3 |
C3' |
C2' |
C1' |
H2'A |
120.0 |
118.7 |
H2' |
C2' |
C1' |
H2'A |
240.0 |
237.4 |
N1 |
C1' |
H1' |
C2' |
129.5 |
121.0 |
H1' |
C1' |
C2' |
H2' |
290.0 |
1.1 |
H1' |
C1' |
C2' |
H2'A |
50.0 |
123.7 |
C30 |
C17 |
N2 |
C5' |
286.0 |
174.9 |
C30 |
C17 |
N2 |
HN2 |
45.9 |
298.9 |
C18 |
C17 |
N2 |
C5' |
185.3 |
294.9 |
C18 |
C17 |
N2 |
HN2 |
305.3 |
58.9 |
C24 |
C17 |
N2 |
C5' |
74.0 |
55.0 |
C24 |
C17 |
N2 |
HN2 |
194.0 |
179.0 |
C23 |
C18 |
C19 |
H19 |
182.8 |
180.3 |
C20 |
C19 |
C18 |
H19 |
180.0 |
180.0 |
C18 |
C19 |
C20 |
H19 |
180.0 |
180.0 |
C2' |
C3' |
O1 |
HO1 |
180.0 |
61.4 |
C3' |
C2' |
C1' |
H1' |
170.0 |
242.5 |
C1' |
C2' |
C3' |
H2' |
120.0 |
118.7 |
C1' |
C2' |
C3' |
H2'A |
240.0 |
241.3 |
H2' |
C2' |
C3' |
H2'A |
120.0 |
122.7 |
H2' |
C2' |
C1' |
H1' |
290.0 |
1.1 |
C1' |
C2' |
H2' |
H2'A |
128.4 |
122.6 |
C3' |
C2' |
H2' |
H2'A |
231.6 |
237.3 |
H2'A |
C2' |
C1' |
H1' |
50.0 |
123.7 |
C1' |
C2' |
H2'A |
H2' |
231.6 |
237.4 |
C3' |
C2' |
H2'A |
H2' |
128.5 |
122.7 |
C21 |
C20 |
C19 |
H19 |
180.2 |
180.0 |
H20 |
C20 |
C19 |
H19 |
0.2 |
360.0 |
C22 |
C21 |
C20 |
H20 |
177.8 |
180.1 |
H21 |
C21 |
C20 |
H20 |
357.8 |
360.0 |
C23 |
C22 |
C21 |
H21 |
180.9 |
179.7 |
H22 |
C22 |
C21 |
H21 |
1.0 |
0.1 |
H22 |
C22 |
C23 |
H23 |
2.4 |
359.7 |
H23 |
C23 |
C22 |
H22 |
2.4 |
359.7 |
C25 |
C24 |
C29 |
C28 |
356.0 |
359.4 |
C25 |
C24 |
C29 |
H29 |
176.0 |
179.7 |
C27 |
C28 |
C29 |
C24 |
3.1 |
0.6 |
C24 |
C29 |
C28 |
H28 |
183.2 |
180.3 |
C28 |
C29 |
C24 |
H29 |
180.0 |
179.7 |
C26 |
C25 |
C24 |
C29 |
3.4 |
0.3 |
H25 |
C25 |
C24 |
C29 |
183.4 |
180.3 |
C27 |
C26 |
C25 |
H25 |
178.5 |
180.0 |
C28 |
C27 |
C26 |
H27 |
180.0 |
180.1 |
C26 |
C27 |
C28 |
C29 |
358.8 |
359.7 |
C26 |
C27 |
C28 |
H28 |
178.8 |
180.0 |
H26 |
C26 |
C25 |
H25 |
358.5 |
359.9 |
H26 |
C26 |
C27 |
C28 |
180.3 |
180.1 |
H26 |
C26 |
C27 |
H27 |
0.3 |
0.0 |
C24 |
C29 |
C28 |
C27 |
3.1 |
0.6 |
C28 |
C27 |
C26 |
H26 |
180.3 |
180.1 |
C26 |
C27 |
C28 |
H27 |
180.0 |
179.9 |
C29 |
C28 |
C27 |
H28 |
180.0 |
179.7 |
C27 |
C28 |
C29 |
H29 |
183.2 |
180.3 |
H27 |
C27 |
C26 |
H26 |
0.3 |
0.0 |
C26 |
C27 |
H27 |
C28 |
180.0 |
180.1 |
H27 |
C27 |
C28 |
C29 |
178.8 |
179.8 |
H27 |
C27 |
C28 |
H28 |
358.8 |
0.1 |
C24 |
C29 |
C28 |
H29 |
180.0 |
180.3 |
C29 |
C28 |
C27 |
H27 |
178.8 |
179.8 |
C27 |
C28 |
C29 |
H28 |
180.0 |
180.3 |
H28 |
C28 |
C27 |
H27 |
358.8 |
0.1 |
C27 |
C28 |
H28 |
C29 |
180.0 |
179.7 |
H28 |
C28 |
C29 |
H29 |
3.2 |
360.0 |
C24 |
C29 |
H29 |
C28 |
180.0 |
179.7 |
H29 |
C29 |
C28 |
H28 |
3.2 |
360.0 |
C4' |
C3' |
O1 |
HO1 |
299.4 |
174.1 |
N2 |
C5' |
C4' |
C3' |
168.5 |
185.0 |
C4' |
C3' |
C2' |
H2' |
286.7 |
262.2 |
C4' |
C3' |
C2' |
H2'A |
166.7 |
139.6 |
H3' |
C3' |
O1 |
HO1 |
62.1 |
297.7 |
H3' |
C3' |
C2' |
H2' |
163.9 |
144.0 |
H3' |
C3' |
C2' |
H2'A |
43.9 |
21.4 |
C35 |
C30 |
C31 |
H31 |
182.8 |
180.3 |
C32 |
C31 |
C30 |
H31 |
180.0 |
180.0 |
C30 |
C31 |
C32 |
H31 |
180.0 |
180.0 |
C33 |
C32 |
C31 |
H31 |
178.2 |
180.0 |
H32 |
C32 |
C31 |
H31 |
358.2 |
0.0 |
C34 |
C33 |
C32 |
H32 |
180.4 |
180.0 |
H33 |
C33 |
C32 |
H32 |
0.3 |
0.0 |
C35 |
C34 |
C33 |
H33 |
180.0 |
179.7 |
H34 |
C34 |
C33 |
H33 |
0.0 |
359.9 |
H34 |
C34 |
C35 |
H35 |
1.1 |
359.8 |
H35 |
C35 |
C34 |
H34 |
1.1 |
359.8 |
C4' |
C5' |
N2 |
HN2 |
83.6 |
49.5 |
N2 |
C5' |
C4' |
H5' |
120.0 |
120.1 |
N2 |
C5' |
C4' |
H5'A |
240.0 |
240.0 |
C5' |
C4' |
C3' |
H3' |
330.8 |
322.7 |
O4' |
C4' |
C5' |
H4' |
123.8 |
123.0 |
N2 |
C5' |
C4' |
O4' |
51.5 |
70.9 |
C4' |
O4' |
C1' |
H1' |
165.5 |
93.0 |
O4' |
C4' |
C3' |
H3' |
92.9 |
81.2 |
C5' |
C4' |
O4' |
H4' |
246.0 |
237.0 |
H4' |
C4' |
C3' |
H3' |
217.0 |
199.7 |
H5' |
C5' |
N2 |
HN2 |
203.6 |
169.5 |
N2 |
C5' |
H5' |
C4' |
235.7 |
239.9 |
N2 |
C5' |
H5' |
H5'A |
117.8 |
120.0 |
H5' |
C5' |
C4' |
H4' |
167.7 |
187.9 |
H5'A |
C5' |
N2 |
HN2 |
323.6 |
289.5 |
N2 |
C5' |
H5'A |
C4' |
124.4 |
120.0 |
N2 |
C5' |
H5'A |
H5' |
242.2 |
240.0 |
H5'A |
C5' |
C4' |
H4' |
47.7 |
68.0 |