PDB Chemical Component DUA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DUA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 N1 1.375 1.345
C6 N1 1.337 1.368
N1 C1' 1.425 1.465
C3' O1 1.418 1.429
O1 HO1 0.950 0.967
N3 C2 1.314 1.346
C2 O2 1.240 1.216
C17 N2 1.470 1.468
N2 C5' 1.494 1.469
N2 HN2 1.000 1.009
C4 N3 1.354 1.348
O4 C4 1.258 1.218
C4 C5 1.375 1.416
C5 C6 1.342 1.350
C5 H5 1.080 1.080
C6 H6 1.080 1.080
O4' C1' 1.448 1.437
C1' C2' 1.487 1.541
C1' H1' 1.100 1.091
C30 C17 1.521 1.508
C18 C17 1.587 1.507
C24 C17 1.494 1.507
C23 C18 1.405 1.383
C18 C19 1.432 1.382
C20 C19 1.427 1.382
C19 H19 1.080 1.080
C3' C2' 1.550 1.548
C2' H2' 1.100 1.089
C2' H2'A 1.100 1.090
C21 C20 1.387 1.383
C20 H20 1.080 1.080
C22 C21 1.393 1.383
C21 H21 1.080 1.080
C22 C23 1.427 1.383
C22 H22 1.080 1.079
C23 H23 1.079 1.080
C25 C24 1.413 1.383
C24 C29 1.384 1.382
C26 C25 1.408 1.382
C25 H25 1.080 1.080
C26 C27 1.390 1.383
C26 H26 1.080 1.080
C27 C28 1.405 1.383
C27 H27 1.080 1.080
C28 C29 1.422 1.382
C28 H28 1.080 1.080
C29 H29 1.080 1.079
C4' C3' 1.531 1.550
C3' H3' 1.100 1.090
C35 C30 1.420 1.382
C30 C31 1.396 1.382
C32 C31 1.382 1.383
C31 H31 1.080 1.079
C33 C32 1.403 1.383
C32 H32 1.080 1.080
C34 C33 1.399 1.382
C33 H33 1.080 1.080
C34 C35 1.381 1.383
C34 H34 1.080 1.080
C35 H35 1.080 1.080
C5' C4' 1.494 1.530
C4' O4' 1.416 1.444
C4' H4' 1.100 1.089
C5' H5' 1.100 1.090
C5' H5'A 1.100 1.090
N3 HN3 1.000 0.970

Bond Angles for DUA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C1' 121.4 119.7
C6 N1 C1' 113.5 119.7
N1 C1' C2' 130.2 109.9
N1 C1' H1' 60.2 109.9
C3' O1 HO1 109.5 114.0
C17 N2 C5' 115.5 111.0
C17 N2 HN2 107.5 111.0
C5' N2 HN2 107.5 111.0
N2 C5' C4' 114.8 109.5
N2 C5' H5' 107.7 109.5
N2 C5' H5'A 107.7 109.5
C4 N3 HN3 120.2 119.9
O4 C4 C5 115.4 120.3
C4 C5 C6 117.7 119.1
C4 C5 H5 121.2 120.4
C6 C5 H5 121.2 120.5
C5 C6 H6 120.9 120.1
O4' C1' H1' 127.5 110.0
C2' C1' H1' 102.5 109.9
C1' C2' H2' 117.3 110.5
C1' C2' H2'A 117.3 110.5
C18 C19 H19 116.5 120.0
C20 C19 H19 116.5 120.0
C3' C2' H2' 117.3 110.5
C3' C2' H2'A 117.3 110.6
H2' C2' H2'A 100.6 110.5
C21 C20 H20 120.2 120.0
C22 C21 H21 122.3 120.0
C23 C22 H22 118.0 120.0
C22 C23 H23 118.5 120.0
C25 C24 C29 116.4 120.0
C24 C29 C28 119.4 120.0
C24 C29 H29 120.3 120.0
C26 C25 H25 117.6 120.0
C27 C26 H26 121.0 120.0
C26 C27 C28 118.1 120.0
C26 C27 H27 120.9 120.0
C28 C27 H27 120.9 120.0
C27 C28 C29 123.1 120.0
C27 C28 H28 118.5 119.9
C29 C28 H28 118.5 120.0
C28 C29 H29 120.3 120.0
C4' C3' H3' 114.3 110.9
C30 C31 H31 119.7 120.0
C32 C31 H31 119.7 120.0
C33 C32 H32 120.4 120.0
C34 C33 H33 118.6 120.0
C35 C34 H34 122.0 120.0
C34 C35 H35 118.3 120.0
C5' C4' H4' 100.2 110.6
O4' C4' H4' 116.4 110.6
H5' C5' H5'A 111.2 109.4

Torsion Angles for DUA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 C1' 190.4 180.3
C2 N1 C1' C2' 139.2 115.0
C2 N1 C1' H1' 58.4 354.0
C2 N1 C6 C1' 170.3 179.7
C6 N1 C1' C2' 309.9 294.7
C6 N1 C1' H1' 229.0 173.7
O4' C1' N1 H1' 241.7 238.9
C2' C1' N1 H1' 80.9 121.0
N1 C1' C2' H2' 228.7 240.2
N1 C1' C2' H2'A 348.7 2.7
N3 C2 N1 C1' 175.6 180.0
O2 C2 N1 C1' 351.9 0.0
C5' N2 C17 HN2 240.0 236.0
C17 N2 C5' C4' 203.6 173.5
C17 N2 C5' H5' 323.6 293.5
C17 N2 C5' H5'A 83.6 53.5
C17 N2 C5' HN2 120.0 124.0
N2 C5' C4' H4' 287.7 308.0
H5' C5' N2 H5'A 240.0 240.0
C17 N2 HN2 C5' 235.1 236.0
HN2 N2 C5' C4' 83.6 49.5
HN2 N2 C5' H5' 203.6 169.5
HN2 N2 C5' H5'A 323.6 289.5
O4 C4 N3 HN3 3.2 0.0
O4 C4 C5 C6 177.5 179.7
O4 C4 C5 H5 357.5 360.0
C5 C4 N3 HN3 184.1 180.0
C6 C5 C4 H5 180.0 179.7
C4 C5 C6 H6 183.9 180.0
C5 C6 N1 C1' 184.3 179.7
C4 C5 C6 H5 180.0 180.3
C4 C5 H5 C6 180.0 179.7
H5 C5 C6 H6 3.9 359.7
H6 C6 N1 C1' 4.3 0.2
H6 C6 C5 H5 3.9 359.7
N1 C1' O4' H1' 74.4 121.1
C2' C1' O4' H1' 239.3 240.5
O4' C1' C2' H2' 65.7 120.7
O4' C1' C2' H2'A 185.7 243.3
N1 C1' C2' H1' 298.7 239.0
O4' C1' C2' H1' 135.7 119.6
C3' C2' C1' H2' 240.0 241.3
C3' C2' C1' H2'A 120.0 118.7
H2' C2' C1' H2'A 240.0 237.4
N1 C1' H1' C2' 129.5 121.0
H1' C1' C2' H2' 290.0 1.1
H1' C1' C2' H2'A 50.0 123.7
C30 C17 N2 C5' 286.0 174.9
C30 C17 N2 HN2 45.9 298.9
C18 C17 N2 C5' 185.3 294.9
C18 C17 N2 HN2 305.3 58.9
C24 C17 N2 C5' 74.0 55.0
C24 C17 N2 HN2 194.0 179.0
C23 C18 C19 H19 182.8 180.3
C20 C19 C18 H19 180.0 180.0
C18 C19 C20 H19 180.0 180.0
C2' C3' O1 HO1 180.0 61.4
C3' C2' C1' H1' 170.0 242.5
C1' C2' C3' H2' 120.0 118.7
C1' C2' C3' H2'A 240.0 241.3
H2' C2' C3' H2'A 120.0 122.7
H2' C2' C1' H1' 290.0 1.1
C1' C2' H2' H2'A 128.4 122.6
C3' C2' H2' H2'A 231.6 237.3
H2'A C2' C1' H1' 50.0 123.7
C1' C2' H2'A H2' 231.6 237.4
C3' C2' H2'A H2' 128.5 122.7
C21 C20 C19 H19 180.2 180.0
H20 C20 C19 H19 0.2 360.0
C22 C21 C20 H20 177.8 180.1
H21 C21 C20 H20 357.8 360.0
C23 C22 C21 H21 180.9 179.7
H22 C22 C21 H21 1.0 0.1
H22 C22 C23 H23 2.4 359.7
H23 C23 C22 H22 2.4 359.7
C25 C24 C29 C28 356.0 359.4
C25 C24 C29 H29 176.0 179.7
C27 C28 C29 C24 3.1 0.6
C24 C29 C28 H28 183.2 180.3
C28 C29 C24 H29 180.0 179.7
C26 C25 C24 C29 3.4 0.3
H25 C25 C24 C29 183.4 180.3
C27 C26 C25 H25 178.5 180.0
C28 C27 C26 H27 180.0 180.1
C26 C27 C28 C29 358.8 359.7
C26 C27 C28 H28 178.8 180.0
H26 C26 C25 H25 358.5 359.9
H26 C26 C27 C28 180.3 180.1
H26 C26 C27 H27 0.3 0.0
C24 C29 C28 C27 3.1 0.6
C28 C27 C26 H26 180.3 180.1
C26 C27 C28 H27 180.0 179.9
C29 C28 C27 H28 180.0 179.7
C27 C28 C29 H29 183.2 180.3
H27 C27 C26 H26 0.3 0.0
C26 C27 H27 C28 180.0 180.1
H27 C27 C28 C29 178.8 179.8
H27 C27 C28 H28 358.8 0.1
C24 C29 C28 H29 180.0 180.3
C29 C28 C27 H27 178.8 179.8
C27 C28 C29 H28 180.0 180.3
H28 C28 C27 H27 358.8 0.1
C27 C28 H28 C29 180.0 179.7
H28 C28 C29 H29 3.2 360.0
C24 C29 H29 C28 180.0 179.7
H29 C29 C28 H28 3.2 360.0
C4' C3' O1 HO1 299.4 174.1
N2 C5' C4' C3' 168.5 185.0
C4' C3' C2' H2' 286.7 262.2
C4' C3' C2' H2'A 166.7 139.6
H3' C3' O1 HO1 62.1 297.7
H3' C3' C2' H2' 163.9 144.0
H3' C3' C2' H2'A 43.9 21.4
C35 C30 C31 H31 182.8 180.3
C32 C31 C30 H31 180.0 180.0
C30 C31 C32 H31 180.0 180.0
C33 C32 C31 H31 178.2 180.0
H32 C32 C31 H31 358.2 0.0
C34 C33 C32 H32 180.4 180.0
H33 C33 C32 H32 0.3 0.0
C35 C34 C33 H33 180.0 179.7
H34 C34 C33 H33 0.0 359.9
H34 C34 C35 H35 1.1 359.8
H35 C35 C34 H34 1.1 359.8
C4' C5' N2 HN2 83.6 49.5
N2 C5' C4' H5' 120.0 120.1
N2 C5' C4' H5'A 240.0 240.0
C5' C4' C3' H3' 330.8 322.7
O4' C4' C5' H4' 123.8 123.0
N2 C5' C4' O4' 51.5 70.9
C4' O4' C1' H1' 165.5 93.0
O4' C4' C3' H3' 92.9 81.2
C5' C4' O4' H4' 246.0 237.0
H4' C4' C3' H3' 217.0 199.7
H5' C5' N2 HN2 203.6 169.5
N2 C5' H5' C4' 235.7 239.9
N2 C5' H5' H5'A 117.8 120.0
H5' C5' C4' H4' 167.7 187.9
H5'A C5' N2 HN2 323.6 289.5
N2 C5' H5'A C4' 124.4 120.0
N2 C5' H5'A H5' 242.2 240.0
H5'A C5' C4' H4' 47.7 68.0