PDB Chemical Component DU8

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DU8

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O5	C13	1.214	1.208
N5	C2	1.299	1.386
C13	O4	1.239	1.342
C13	C12	1.542	1.507
N4	C3	1.316	1.357
N4	C5	1.306	1.311
C2	C3	1.322	1.404
C2	N1	1.315	1.329
C11	S1	1.780	1.810
C11	C12	1.531	1.530
N6	N7	0.844	1.124
N6	C10	1.435	1.465
C3	C4	1.316	1.404
S1	C5	1.784	1.762
C5	N3	1.286	1.368
N1	C1	1.335	1.320
N7	N8	0.908	1.124
O1	C8	1.299	1.444
O1	C9	1.391	1.444
C4	N3	1.305	1.376
C4	N2	1.317	1.329
N3	C9	1.407	1.465
C1	N2	1.321	1.317
C10	C8	1.492	1.529
C8	C7	1.454	1.544
C9	C6	1.514	1.545
C7	C6	1.505	1.545
C7	O3	1.349	1.429
C6	O2	1.386	1.429
C1	H1	1.080	1.080
C6	H2	1.100	1.090
C7	H3	1.100	1.089
O2	H4	0.950	0.967
C10	H5	1.100	1.089
C10	H6	1.100	1.090
C11	H7	1.100	1.090
C11	H8	1.100	1.090
C12	H9	1.100	1.090
C12	H10	1.100	1.089
C8	H11	1.101	1.090
C9	H12	1.100	1.090
N5	H13	1.000	0.970
N5	H14	1.000	0.970
O3	H16	0.950	0.967
O4	H17	0.950	0.967

Bond Angles for DU8

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C13	O4	H17	109.5	117.0
C13	C12	H9	109.6	109.4
C13	C12	H10	109.6	109.4
C3	C2	N1	119.8	118.5
C2	C3	C4	118.5	118.2
C12	C11	S1	110.6	109.4
S1	C11	H7	109.2	109.5
S1	C11	H8	109.2	109.5
C12	C11	H7	109.2	109.5
C12	C11	H8	109.2	109.5
C11	C12	H9	109.5	109.5
C11	C12	H10	109.6	109.5
N6	N7	N8	176.9	179.9
N6	C10	H5	108.6	109.4
N6	C10	H6	108.6	109.4
C3	C4	N3	107.9	106.2
C3	C4	N2	122.4	119.1
C4	N3	C5	108.0	107.4
C5	N3	C9	129.6	126.3
N1	C1	N2	118.5	122.4
N1	C1	H1	120.7	118.8
C8	O1	C9	96.8	105.3
O1	C8	C10	114.9	110.4
O1	C8	C7	104.7	104.8
O1	C8	H11	114.3	110.4
O1	C9	C6	100.6	104.8
O1	C9	H12	111.5	110.4
N2	C4	N3	129.7	134.7
C4	N3	C9	122.4	126.3
C1	N2	C4	119.2	120.6
N3	C9	H12	111.2	110.4
N2	C1	H1	120.8	118.8
C8	C10	H5	108.5	109.5
C8	C10	H6	108.6	109.5
C10	C8	H11	111.0	110.3
C8	C7	O3	101.7	110.5
C8	C7	H3	112.0	110.7
C9	C6	H2	110.7	110.6
C7	C6	O2	109.3	110.5
C7	C6	H2	110.9	110.5
O3	C7	H3	113.9	110.4
C7	O3	H16	109.5	114.0
O2	C6	H2	112.7	110.5
C6	O2	H4	109.5	114.0
H5	C10	H6	109.5	109.5
H7	C11	H8	109.5	109.5
H9	C12	H10	109.5	109.5
H13	N5	H14	109.5	120.0

Torsion Angles for DU8

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O5	C13	O4	H17	0.0	359.9
O5	C13	C12	H9	79.1	240.0
O5	C13	C12	H10	199.3	120.0
O4	C13	C12	H9	259.7	60.0
O4	C13	C12	H10	19.8	300.0
C13	C12	C11	S1	296.8	180.0
C13	C12	C11	H7	176.6	300.0
C13	C12	C11	H8	56.9	60.0
C11	C12	C13	H9	240.1	120.0
C11	C12	C13	H10	120.0	240.0
H9	C12	C13	H10	239.9	120.0
C2	C3	C4	N3	178.6	180.0
C2	C3	C4	N2	359.8	359.5
N1	C2	C3	C4	0.4	0.2
C2	N1	C1	N2	2.5	359.9
C2	N1	C1	H1	182.5	179.7
C12	C11	S1	H7	239.8	120.0
C12	C11	S1	H8	120.2	240.0
S1	C11	C12	H9	176.9	299.9
S1	C11	C12	H10	56.7	60.0
H7	C11	S1	H8	240.3	120.0
C13	C12	C11	H9	119.9	240.0
C13	C12	C11	H10	240.0	119.9
S1	C11	C12	H7	120.2	240.0
S1	C11	C12	H8	239.8	120.0
H7	C11	C12	H8	119.7	240.0
H9	C12	C11	H10	120.1	239.9
N7	N6	C10	H5	53.1	360.0
N7	N6	C10	H6	172.1	240.0
C8	C10	N6	H5	239.5	120.1
C8	C10	N6	H6	120.5	240.0
N6	C10	C8	H11	223.7	304.2
H5	C10	N6	H6	241.0	120.0
C4	C3	C2	N1	0.4	0.2
C3	C4	N3	C5	1.6	0.0
N2	C4	C3	N3	181.2	179.5
C3	C4	N3	C9	180.1	179.9
C1	N2	C4	C3	1.2	0.5
N2	C4	N3	C5	180.2	180.6
C4	N3	C5	C9	178.4	179.9
C5	N3	C9	H12	167.5	165.8
N1	C1	N2	C4	357.7	359.8
N2	C1	N1	H1	180.0	180.2
C8	O1	C9	C6	297.2	319.5
C8	O1	C9	H12	53.4	78.3
O1	C8	C10	H5	234.8	186.5
O1	C8	C10	H6	115.8	306.5
C10	C8	O1	H11	230.0	237.8
O1	C8	C7	O3	217.9	217.4
O1	C8	C7	H3	95.9	94.7
C5	N3	C9	O1	43.6	43.5
C9	O1	C8	C10	160.9	159.4
C9	O1	C8	C7	53.3	40.5
C9	O1	C8	H11	290.9	281.6
C4	N3	C9	O1	225.5	223.6
N3	C9	O1	H12	123.8	122.4
O1	C9	C6	H2	289.8	265.3
C3	C4	N3	N2	181.4	179.4
C5	N3	C4	C9	181.5	180.1
C1	N2	C4	N3	182.7	179.9
C4	N3	C9	H12	349.4	345.9
C3	C4	N2	N3	178.5	180.6
N2	C4	N3	C9	358.7	0.5
C4	N2	C1	H1	177.7	180.0
C4	N3	C9	C5	181.9	180.1
O1	C9	N3	H12	236.1	237.6
N3	C9	C6	H2	47.1	24.1
C3	C4	N2	C1	1.2	0.5
N1	C1	N2	H1	180.0	179.8
N6	C10	C8	H5	120.5	240.0
N6	C10	C8	H6	239.5	120.0
C10	C8	O1	C9	160.9	159.4
O1	C8	C10	C7	249.0	244.6
O1	C8	C10	H11	131.6	122.2
C10	C8	C7	O3	99.0	98.5
C10	C8	C7	H3	337.0	335.9
H5	C10	C8	H6	118.9	240.0
C7	C8	O1	C9	53.3	40.5
O1	C8	C7	C10	118.9	118.8
O1	C8	C7	H11	235.9	241.1
C8	C7	C6	H2	101.4	118.8
O3	C7	C8	H3	122.0	122.6
C8	C7	O3	H16	180.0	294.7
C5	N3	C9	C6	291.8	288.1
O1	C9	C6	H12	117.5	118.8
C4	N3	C9	C6	113.7	108.2
C7	C6	C9	H2	114.4	118.7
O2	C6	C9	H2	228.9	237.3
C9	C6	O2	H4	180.0	182.0
O1	C8	C7	C6	335.6	336.0
O1	C9	C6	C7	44.3	24.0
C9	C6	C7	H2	245.7	241.3
O2	C6	C7	H2	124.9	122.6
C7	C6	O2	H4	286.1	296.6
C8	C7	O3	H3	239.3	237.2
O3	C7	C6	O2	335.8	0.0
O3	C7	C6	H2	210.9	237.4
O1	C9	C6	O2	158.7	142.6
C9	C6	O2	H2	130.2	122.8
C7	C6	O2	H2	236.2	237.4
N1	C1	H1	N2	180.0	180.2
H1	C1	N2	C4	177.7	180.0
C7	C6	H2	O2	122.9	122.6
H2	C6	O2	H4	49.8	59.3
C8	C7	H3	O3	114.7	122.7
H3	C7	C6	O2	105.4	122.5
H3	C7	C6	H2	340.5	359.9
H3	C7	O3	H16	300.7	57.5
H4	O2	C6	H2	49.8	59.3
N6	C10	H5	H6	118.4	240.1
C8	C10	H5	H6	241.6	120.0
H5	C10	C8	H11	103.2	64.2
N6	C10	H6	H5	241.6	119.9
C8	C10	H6	H5	118.3	239.9
H6	C10	C8	H11	344.2	184.2
C12	C11	H7	S1	121.0	240.0
S1	C11	H7	H8	119.5	240.0
C12	C11	H7	H8	240.5	120.0
H7	C11	C12	H9	56.7	59.9
H7	C11	C12	H10	296.6	180.1
C12	C11	H8	S1	239.0	119.9
S1	C11	H8	H7	240.5	120.0
C12	C11	H8	H7	119.5	239.9
H8	C11	C12	H9	297.0	180.0
H8	C11	C12	H10	176.9	300.1
C13	C12	H9	H10	120.2	240.1
H9	C12	C11	S1	176.9	299.9
H9	C12	C11	H7	56.7	59.9
H9	C12	C11	H8	297.0	180.0
C11	C12	H9	H10	239.8	120.1
C13	C12	H10	H9	239.8	120.0
H10	C12	C11	S1	56.7	60.0
H10	C12	C11	H7	296.6	180.1
H10	C12	C11	H8	176.9	300.1
C11	C12	H10	H9	120.1	239.9
H11	C8	O1	C9	290.9	281.6
O1	C8	H11	C10	228.1	237.8
O1	C8	H11	C7	118.6	115.4
H11	C8	C10	H5	103.2	64.2
H11	C8	C10	H6	344.2	184.2
H11	C8	C7	O3	342.0	336.2
H11	C8	C7	H3	220.1	213.6
O1	C9	H12	C6	249.5	244.6
H12	C9	C6	H2	172.3	146.5
H16	O3	C7	H3	300.7	57.5